mRNA_Ecto-sp6_S_contig98.18774.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig98.18774.1
Unique NamemRNA_Ecto-sp6_S_contig98.18774.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18774.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.670e-24
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 2 
Query:   41 GTHTTFVNCMGWRGAWDNVQLSGQATALYNYGDRYTGGFGRGRKSGEGTMFAATQV 208
            GTH T VNC+G RG WDN QLSGQATA YNYG+RYTGGF RGR+SGEGTMFAATQV
Sbjct:  101 GTHNTSVNCVGSRGVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAATQV 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U9_ECTSI2.670e-2482.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:337361..337905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.7267735-CDS-Ecto-sp6_S_contig98:337360..3374451682350600.7267735-CDS-Ecto-sp6_S_contig98:337360..337445Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 337361..337445 -
1682350600.7362494-CDS-Ecto-sp6_S_contig98:337699..3378841682350600.7362494-CDS-Ecto-sp6_S_contig98:337699..337884Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig98 337700..337884 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350600.7480557-UTR-Ecto-sp6_S_contig98:337884..3379051682350600.7480557-UTR-Ecto-sp6_S_contig98:337884..337905Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig98 337885..337905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18774.1prot_Ecto-sp6_S_contig98.18774.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig98 337361..337884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig98.18774.1

>prot_Ecto-sp6_S_contig98.18774.1 ID=prot_Ecto-sp6_S_contig98.18774.1|Name=mRNA_Ecto-sp6_S_contig98.18774.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=90bp
MLVTYYRNAHHFRELYGVERCVGQRAALRPSDCSVQLRGSVHWRLWKGPE
ERRGNYVRRHTGFEFIGTSKKGVKNGSGRLRLPWILGNLA
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mRNA from alignment at Ecto-sp6_S_contig98:337361..337905-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig98.18774.1 ID=mRNA_Ecto-sp6_S_contig98.18774.1|Name=mRNA_Ecto-sp6_S_contig98.18774.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=545bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:337361..337905- (Ectocarpus species6 EcLAC_371)
TAGGTAGTCAAAGTTGATCTGATGCTTGTCACATATTACAGGAACGCACA
CCACTTTCGTGAATTGTATGGGGTGGAGAGGTGCGTGGGACAACGTGCAG
CTCTCCGGCCAAGCGACTGCTCTGTACAACTACGGGGATCGGTACACTGG
CGGCTTTGGAAGGGGCCGGAAGAGCGGCGAGGGAACTATGTTCGCCGCCA
CACAGGGTGAGGCAATACCGGAGAAAAGTCGTTGTTGAAAATGGCATAGC
TACCCGAACCGATTCAGTATGGCCTTTTGACTTATCTCCGCGATTTTGTG
GTGCCGGGGATACATCGACAGCCGTCGTCTGCGGGGCGTATTGATGATTG
TCAGCTTAACAATATAGTTCGGAGCGTCGTTAAGCCCGACCAAAAGCTCT
CGGTGCCATGAACTTCTGTTCACTTTCGTCCCTCTCCACTATGAAATTAA
TTCGTGGAAGTTTCGAGTTCATTGGCACCTCCAAGAAAGGCGTCAAGAAC
GGTTCGGGACGCCTGCGCCTTCCGTGGATATTGGGCAATCTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig98:337361..337905-

>mRNA_Ecto-sp6_S_contig98.18774.1 ID=mRNA_Ecto-sp6_S_contig98.18774.1|Name=mRNA_Ecto-sp6_S_contig98.18774.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp6_S_contig98:337361..337905- (Ectocarpus species6 EcLAC_371)
ATGCTTGTCACATATTACAGGAACGCACACCACTTTCGTGAATTGTATGG
GGTGGAGAGGTGCGTGGGACAACGTGCAGCTCTCCGGCCAAGCGACTGCT
CTGTACAACTACGGGGATCGGTACACTGGCGGCTTTGGAAGGGGCCGGAA
GAGCGGCGAGGGAACTATGTTCGCCGCCACACAGGTTTCGAGTTCATTGG
CACCTCCAAGAAAGGCGTCAAGAACGGTTCGGGACGCCTGCGCCTTCCGT
GGATATTGGGCAATCTCGCC
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