mRNA_Ecto-sp6_S_contig97.18736.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig97.18736.1 vs. uniprot
Match: D7FZF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF1_ECTSI) HSP 1 Score: 1110 bits (2872), Expect = 0.000e+0 Identity = 773/876 (88.24%), Postives = 777/876 (88.70%), Query Frame = 1
Query: 94 MLPPAREPSDVSASRQPPSPLESLPAASTSKEXXXXXXXEAGEGNQVVDAVLYAINLGWAWSQVAALGEKVVSPQXXXXXXXXXXXXXXXXXXXXXXXXLGVKLGWPWTPESASPAAAAPNQEGVMPGATPPLDGESKELRLSFPKVPPDPPQEEEGVGGSGPPTRGGRSFSRVKEAIVGTVLGSRLLRTXXXXXXXXXAITKRSSTADDAPPLPSVAGAPAAPPRSAAPTLSLPPAAAALRRIDGSSAGPAPAGRAPWRPPGYRWGKSLVSNMSGLPDVESERVTATTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGETKATRGVQGQQEEARQRQLSSRRMSVFRALSTTAGGVATRLPLMKKSRGDDAREQDLPDQAYNRNSVGEWASVEVSPPASTKADAAEGGANGAQXXXXXXXXX---VPWWQAGAAVLVGVGAALYRPVNRLPGLLFKDEKEEEQRRRQGEEGRQQGTLSQVDATTSPASFQLTRPAEEVASVPPELRPNPPXXXXXXXXXPAETTSSGSRARRGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGNGDATATSEVSAPQAVGGAGWNLFGFFPKDKFFDYLPAGPSPVLEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGKSSSPTGRYLDELGPGGGSGDAXXXXXKKK-----TDGLWLGAEAAAYAAGAAAGTLRDRSSPPQRSLECVSAA 2697
MLPPAREPSDVSASRQPPSPLES XXXXXXX AGEGNQVVDAVLYAINLGW WSQVAALGEKVVSPQ XXXXXXXXXXXXXXXXXXX LGVKLGWPWTPES SPAAAAPNQEGVM GATPPLDGESKEL LSFP+VPPDPPQEEEGVG SGPPTRGGRSFSRVKEAIVGTVLGSRLLRT AITKRSSTADDA PLPSVAGAPAAPPRSAAPTLSLPPAAAALRRIDGSSAGPAPAGRAPWRPPGYRWGKSLVSNMSGLP VESERVTATT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AT GVQGQQEEARQRQLSSRRMSVFRALSTTAGGVATRLPLMKKSR DDAREQDLPDQAYNRNSVGEWASVEVSPPASTKADAAEGGANGAQXXXXXXXXX VPWWQAGAAVLVGVGAALYRPVNRLPGLLFKDEKEEEQRRRQGEEGRQQGTLSQVDATTSPASFQL RPAEEVASVPPE RPNP XXXXXX TT+SGSRAR+GVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGNGDATATSEVSAPQAVGGAGWNLFGFFPKDKF DYLPAGPSPV+EGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXX PAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGKSSSPTGRYLDELGPG XXXXX TDGLWLGAEAAAYAAGAAAGTLRDRSS LECVSAA
Sbjct: 1 MLPPAREPSDVSASRQPPSPLESPXXXXXXXXXXXXXXXXAGEGNQVVDAVLYAINLGWPWSQVAALGEKVVSPQLXXXXXXXXXXXXXXXXXXXGMIKLGVKLGWPWTPESTSPAAAAPNQEGVMTGATPPLDGESKELPLSFPQVPPDPPQEEEGVGDSGPPTRGGRSFSRVKEAIVGTVLGSRLLRTTTTTGGAPGAITKRSSTADDAAPLPSVAGAPAAPPRSAAPTLSLPPAAAALRRIDGSSAGPAPAGRAPWRPPGYRWGKSLVSNMSGLPGVESERVTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGVQGQQEEARQRQLSSRRMSVFRALSTTAGGVATRLPLMKKSRSDDAREQDLPDQAYNRNSVGEWASVEVSPPASTKADAAEGGANGAQXXXXXXXXXXXXVPWWQAGAAVLVGVGAALYRPVNRLPGLLFKDEKEEEQRRRQGEEGRQQGTLSQVDATTSPASFQLARPAEEVASVPPEPRPNP----XXXXXXXXXTTTSGSRARQGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGNGDATATSEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVAKLAKASASWSKSGDTEDNEPEAXXXXXX-PAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGKSSSPTGRYLDELGPGXXXXXXXXXXXXXXXXXXXTDGLWLGAEAAAYAAGAAAGTLRDRSSHHHSDLECVSAA 871
BLAST of mRNA_Ecto-sp6_S_contig97.18736.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE) HSP 1 Score: 934 bits (2413), Expect = 0.000e+0 Identity = 696/862 (80.74%), Postives = 712/862 (82.60%), Query Frame = 1
Query: 1 MVAAPLGGERSTGGKHQRNRGSWGSSTSSLPMLPPAREPSDVSASRQPPSPLESLPAASTSKEXXXXXXXE-AGEGNQVVDAVLYAINLGWAWSQVAALGEKVVSPQXXXXXXXXXXXXXXXXXXXXXXXXLGVKLGWPWTPESASPAAAAPNQEGVMPGATPPLDGESKELRLSFPKVPPDPPQEEEGVGGSGPPTRGGRSFSRVKEAIVGTVLGSRLLRTXXXXXXXXXA---ITKRSSTADDAPPLPSVAGAPAAPPRSAAPTLSLPPAAAALRRIDGSSAGPAPAGRAPWRPPGYRWGKSLVSNMSGLPDVESERVTATTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGETKATRGVQGQQEEARQRQLSSRRMSVFRALSTTAGGVATRLPLMKKSRGDDAREQDLPDQAYNRNSVGEWASVEVSPPASTKADAAEGGANGAQXXXXXXXXX-VPWWQAGAAVLVGVGAALYRPVNRLPGLLFKDEKEEEQRRRQGEEGRQQGTLSQVDATTSPASFQLTRPAEEVASVPPELRPNPPXXXXXXXXXPAETTSSGSRARRGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGN---------GDATATSEVSAPQAVGGAGWNLFGFFPKDKFFDYLPAGPSPVLEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----------------PAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGK 2493
MVAAPLG ERSTGGK QRN GSWGSSTSSLPMLPPAR+PSDVSA R P XXXXXXX A EGNQVVDAVLYAINLGW WSQVAALGEKVVSPQ XXXXXXXXXXXXXXXXXXXXXXXLGVKLGWPWTPES SPAAAAP+QEGVM GA SKEL LS P VPPD P+EE GV SGPPTRGGRSFSRVKEAIVGTVLGSRLLRT A TKRS TA +A PL SVAGAPAAPPRSAAPTLSLPPAAAALRR DGSS GPAPAGRAPWRPPGYRWGKSLVSNMSGLPD ESERVTA TDXXXXXXX XXXX QGG+T+ATRGVQGQQEEA+Q+QLS+RRMSVFRAL+TTAGGVATRLPLMKKSR +DA+EQD PDQAY RNSVGEWASVEVSPPAS GANGAQ XXXXXXXX VPWWQAGAAVLVGVGAALYRPVNRLPGLL KDEKE QGEEGRQQGTLS VDAT SPASFQL RPAEE A VPPE RPNP XXXX A TTSSGSRAR+GVAGLVDRAATMSRRARLWTLLKRRSRARAEPLL SVDTSIMSLTPSELLSPPVEEQETALSSSSGRGP+E +GGGAG GDAT TSEVSAPQAVGGAGWNLFGFFPKDKF DYLPAGPSPV+EGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGK
Sbjct: 1 MVAAPLGSERSTGGKQQRNPGSWGSSTSSLPMLPPARQPSDVSAPRPPXXXXXXXXXXXXXXXXXXXXXXXXAEEGNQVVDAVLYAINLGWLWSQVAALGEKVVSPQLXXXXXXXXXXXXXXXXXXXXXXXLGVKLGWPWTPESTSPAAAAPDQEGVMMGA-------SKELPLSLPTVPPDLPREE-GVSDSGPPTRGGRSFSRVKEAIVGTVLGSRLLRTTTTMTTTAGAPGATTKRSCTAHEAAPLTSVAGAPAAPPRSAAPTLSLPPAAAALRRTDGSSPGPAPAGRAPWRPPGYRWGKSLVSNMSGLPDGESERVTAATDXXXXXXXGRQVAGVGAASAGTGWSPSAXXXXDEQGGKTEATRGVQGQQEEAQQQQLSARRMSVFRALATTAGGVATRLPLMKKSRSEDAQEQDSPDQAYKRNSVGEWASVEVSPPASK-------GANGAQGXXXXXXXXXVPWWQAGAAVLVGVGAALYRPVNRLPGLLLKDEKEXXXXXXQGEEGRQQGTLSLVDATKSPASFQLARPAEEGALVPPEPRPNP----XXXXPPAAGTTSSGSRARQGVAGLVDRAATMSRRARLWTLLKRRSRARAEPLLASVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPQEPVGGGAGGVAASVGVGKGDATTTSEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAWPKSAWLKGLDPRAQVEAAMRDALRSAFGYGLVAPTAGVPAETLEAATLAAGNAAVAEGAKQLLEGK 843 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig97.18736.1 >prot_Ecto-sp6_S_contig97.18736.1 ID=prot_Ecto-sp6_S_contig97.18736.1|Name=mRNA_Ecto-sp6_S_contig97.18736.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=905bp MVAAPLGGERSTGGKHQRNRGSWGSSTSSLPMLPPAREPSDVSASRQPPSback to top mRNA from alignment at Ecto-sp6_S_contig97:577699..581320- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig97.18736.1 ID=mRNA_Ecto-sp6_S_contig97.18736.1|Name=mRNA_Ecto-sp6_S_contig97.18736.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3622bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:577699..581320- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:577699..581320- >mRNA_Ecto-sp6_S_contig97.18736.1 ID=mRNA_Ecto-sp6_S_contig97.18736.1|Name=mRNA_Ecto-sp6_S_contig97.18736.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2715bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:577699..581320- (Ectocarpus species6 EcLAC_371)back to top |