mRNA_Ecto-sp6_S_contig97.18682.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig97.18682.1
Unique NamemRNA_Ecto-sp6_S_contig97.18682.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig97.18682.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI)

HSP 1 Score: 627 bits (1616), Expect = 7.560e-223
Identity = 328/340 (96.47%), Postives = 329/340 (96.76%), Query Frame = 1 
Query:    1 RPDGETARNTGKRVGEAAKVGGEKALLALRRSFVAITAARYFSEAGPDPARGGLRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRAREDDESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQDEREIQYRRKRRSSASKKAANVYLRFITLWQAILQRHQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASEESSTFAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 1020
            RPDGETARNTGKRVGEAAKVGGEKAL ALRRSFVAITAARYFSEAGPDPARG LRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRARED ESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQ EREIQYRRKRRSSASKKAANVYLRFITLWQ       VAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASEESST+APRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC
Sbjct:  209 RPDGETARNTGKRVGEAAKVGGEKALSALRRSFVAITAARYFSEAGPDPARGELRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRAREDFESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQGEREIQYRRKRRSSASKKAANVYLRFITLWQ-------VAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASEESSTYAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 541
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BLAST of mRNA_Ecto-sp6_S_contig97.18682.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE)

HSP 1 Score: 538 bits (1385), Expect = 9.930e-186
Identity = 299/391 (76.47%), Postives = 312/391 (79.80%), Query Frame = 1 
Query:    1 RPDGETARNTGKRVGEAAKVGGEKALLALRRSFVAITAARYFSEAGPDPARGGLRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRAREDDESEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKG------------------------------YDFSADFPKLWCAANMRGSQDEREIQYRRKRRSSASKKAANVYLRF------------ITLWQA---------ILQRHQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAASEESSTFAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 1020
            RPD ETAR TGKRVGEAAKVGGEKAL ALRRSFVAITA RYFSEA  D ARGGLRR DQQRPTSANL GGDP+VADSG GMLLG DEDSEDSQRAREDDESEVPATA EK WDILTDAKAKAEVK+FQERHWA TEKFY NLVTA+ERLEEK+TKEKG                              YDFSADFPKLWC A MR SQ ER+IQYRRKRRSSASKKAANV++               T+WQ          +LQ+HQ AGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLS+GG AASEESST APRHIPSL EMWESAAAAGEGEGTH+HAIIM+K QADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC
Sbjct:  292 RPDDETARKTGKRVGEAAKVGGEKALAALRRSFVAITAVRYFSEAVKDAARGGLRRQDQQRPTSANL-GGDPDVADSGYGMLLGGDEDSEDSQRAREDDESEVPATAEEKLWDILTDAKAKAEVKVFQERHWAATEKFYENLVTATERLEEKKTKEKGKYSILNGIVGKKQFLNVTPCLPLRSGYEKRYDFSADFPKLWCVATMRDSQGERKIQYRRKRRSSASKKAANVFMCLGLDVNRQRKREQSTVWQVLASIQNNKLVLQQHQEAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSKGGRAASEESSTNAPRHIPSLMEMWESAAAAGEGEGTHLHAIIMKKVQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC 681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig97.18682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD7_ECTSI7.560e-22396.47EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JXQ3_9PHAE9.930e-18676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig97contigEcto-sp6_S_contig97:62950..65484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1023
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002250.1
Cds size1023
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350595.2124624-CDS-Ecto-sp6_S_contig97:62949..633411682350595.2124624-CDS-Ecto-sp6_S_contig97:62949..63341Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 62950..63341 -
1682350595.2269337-CDS-Ecto-sp6_S_contig97:63652..638101682350595.2269337-CDS-Ecto-sp6_S_contig97:63652..63810Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 63653..63810 -
1682350595.23738-CDS-Ecto-sp6_S_contig97:64688..649601682350595.23738-CDS-Ecto-sp6_S_contig97:64688..64960Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 64689..64960 -
1682350595.2471054-CDS-Ecto-sp6_S_contig97:65283..654841682350595.2471054-CDS-Ecto-sp6_S_contig97:65283..65484Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig97 65284..65484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig97.18682.1prot_Ecto-sp6_S_contig97.18682.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig97 62950..65484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig97.18682.1

>prot_Ecto-sp6_S_contig97.18682.1 ID=prot_Ecto-sp6_S_contig97.18682.1|Name=mRNA_Ecto-sp6_S_contig97.18682.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=341bp
RPDGETARNTGKRVGEAAKVGGEKALLALRRSFVAITAARYFSEAGPDPA
RGGLRRHDQQRPTSANLEGGDPNVADSGDGMLLGEDEDSEDSQRAREDDE
SEVPATAVEKPWDILTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLE
EKRTKEKGYDFSADFPKLWCAANMRGSQDEREIQYRRKRRSSASKKAANV
YLRFITLWQAILQRHQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSL
STLSRGGTAASEESSTFAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRK
AQADRPLPRELCEAYEREMVERIDRRQAENNVPIVPMPIC*
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mRNA from alignment at Ecto-sp6_S_contig97:62950..65484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig97.18682.1 ID=mRNA_Ecto-sp6_S_contig97.18682.1|Name=mRNA_Ecto-sp6_S_contig97.18682.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2535bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:62950..65484- (Ectocarpus species6 EcLAC_371)
CGACCGGACGGCGAGACTGCCCGGAACACCGGCAAGCGGGTGGGCGAGGC
TGCCAAGGTCGGTGGCGAAAAGGCTCTCTTAGCTCTCAGGCGGTCCTTCG
TCGCCATCACCGCCGCGAGATACTTCAGCGAGGCCGGCCCAGACCCTGCA
CGAGGAGGACTGCGACGGCACGATCAGCAACGCCCTACCAGTGCCAACCT
GGTGAGGACTCTTGTCGCTTCTGTCCATGTTCTGACTATGCCCCTAAATG
TGGCTTCGGCAACTGACTGTCGTTGTCTGAACCCAGCATGTTTCAGTGCG
ACTTTAGAGAAAGCAAGATATCTAAGGTAGTGACCGTTTGATTATGTGCC
TCTCCATGCCATCCAGTGAACTTACTGTATCTTTGAAGTGAAATGTCGAT
CGGCATCGTCGAAAGAAATACCCGCTGTTGATTTTTTAGCGCAAGGCTAC
TGCACAAAGCAGTACGCTATGCTTCCTGTTATCTAATGATCGCCATGGTT
GGGGTGGGAAACGGAAATATCGAGGAGGGCGGTGACCCAAACGTTGCCGA
CAGTGGAGACGGTATGCTGCTTGGTGAAGACGAGGATAGCGAGGATTCAC
AGCGAGCTAGAGAGGATGACGAGAGCGAGGTGCCGGCGACGGCGGTAGAA
AAACCCTGGGATATCCTGACCGATGCTAAAGCTAAGGCGGAGGTGAAGAT
GTTCCAGGAGCGACACTGGGCAGTAACGGAGAAGTTTTACGCAAACCTTG
TCACTGCGTCGGAGAGACTCGAAGAGAAAAGAACCAAGGAGAAAGGGTGG
GTTTTGTTTCTTCCAAAAAGAAAGCTACGATACTCCATTTTACAATACAC
CACTGGAACGCCGCAAACAAACAACCATTCGGGATATGTTCTTGATGACG
TGGTTGTGGCGGAACGATACGTCGTATTTCACGTTGGAATATCGACTAGC
TTTGAAGCCCTCAATTACATGTAGTTTCATATCACTGAGACATTTATCAC
CGAATCTTTATACGCCCACGGAGAACCTTTGAATTGGTACACTCTCGGGG
TGACTTGGCCACGCCACAAACAAACGTATCCTGTGGTGAACAGGTTAGCA
ACGACAGGCACAGGCATTCAACCACGCACAACGTTACGGACAATAGGATG
AAATGCAGTTGCCGATGCACCAGTACACATATTGCACGCAGCGCGGTACA
TGCGCGCATATACCCGGTAACGTCTTCACACGTCCAGCCGACGGGCGCGT
TTGAAAGATCTGTAGAAGCATGGCCAAAACGAAGTACGATGATTTGACCG
GACACATCTCCTCAACCCCATTTCCGTCCCTGGTGGCGTAGACTAAAGTA
TACTCACAGTACTTACTCTATCGAGCGATGTTGACAAAAAAGCTCAGATG
ACGAGTGTTGCTTGAAGCTTCATTCTCTTTGTCCTGCGTCCTGAGCTGTT
CTTCTCAACGAAATGTGCTGGGATGCTTGTAGTGCCTCTCTTGGTGCCAG
AGAGACTTCACTAATAGTTAATCCACTTTTCTCGCGGGTTTACCCGGGAC
GAGTGGCCATCATGTCCAACGCCCAATTGGCAGGAAATCCTCAATCTTGA
GCGGGATTGCTGGCAAGAAACAATGGTTGAATGTGACCCCCCTGCCTCCC
TTTACGTTCCGTGTACGAAAAAAGATACGACTTCTCGGCGGACTTCCCGA
AGCTATGGTGCGCGGCTAACATGCGTGGCAGCCAAGACGAAAGAGAGATC
CAGTACCGACGGAAGCGGCGATCAAGCGCGTCGAAAAAGGCGGCGAATGT
GTATCTACGTTTCATTACGTTGTGGCAGGCAAGTTGGACCTTTTGTCGTG
TCTCCAAGATGGTTATTGGCGTGTGCCGCCTTGTCAAGGTGTTTCTCGAG
GCCGAGCGGTTGAGACCCCACGAAATAATTTTGAAGAATTTTTACACCAT
GCATGCTTCTCGTGGCAAGCAGGCCTCAAAGCTTCACATTTACCGTGTAC
TGGAGTATGCACCGACCACATTTCCGTCCATCATGCTTTTAGCTTCATGT
ATGCATACTCGATGTCAACCAACCGACATGGGGAACGAGAACAATCAACC
GTGTAGGCAAGACTTGCGAGCATACAAAATAACAGTAAATTAGTACTCCA
ACGACACCAGGTGGCCGGCGATGACAGCGGCCGCTCGAAGCTGGCAAAGG
CTTTCAACCGATGGCGGCTGAACACCTGCGACGCCGCCGTGGACGACCTG
AGTGGTAGCTTGTCAACGCTGAGTAGAGGTGGCACGGCGGCATCAGAAGA
GAGTTCCACGTTCGCCCCCCGGCACATCCCGAGCCTCAAGGAGATGTGGG
AATCTGCTGCTGCTGCTGGAGAGGGCGAGGGAACCCATGTGCACGCCATT
ATCATGAGGAAGGCTCAAGCCGATCGACCTCTTCCGCGCGAGCTGTGCGA
GGCGTACGAGCGGGAGATGGTCGAGAGGATCGACCGTCGCCAGGCGGAGA
ACAACGTTCCCATCGTCCCCATGCCCATTTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig97:62950..65484-

>mRNA_Ecto-sp6_S_contig97.18682.1 ID=mRNA_Ecto-sp6_S_contig97.18682.1|Name=mRNA_Ecto-sp6_S_contig97.18682.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp6_S_contig97:62950..65484- (Ectocarpus species6 EcLAC_371)
CGACCGGACGGCGAGACTGCCCGGAACACCGGCAAGCGGGTGGGCGAGGC
TGCCAAGGTCGGTGGCGAAAAGGCTCTCTTAGCTCTCAGGCGGTCCTTCG
TCGCCATCACCGCCGCGAGATACTTCAGCGAGGCCGGCCCAGACCCTGCA
CGAGGAGGACTGCGACGGCACGATCAGCAACGCCCTACCAGTGCCAACCT
GGAGGGCGGTGACCCAAACGTTGCCGACAGTGGAGACGGTATGCTGCTTG
GTGAAGACGAGGATAGCGAGGATTCACAGCGAGCTAGAGAGGATGACGAG
AGCGAGGTGCCGGCGACGGCGGTAGAAAAACCCTGGGATATCCTGACCGA
TGCTAAAGCTAAGGCGGAGGTGAAGATGTTCCAGGAGCGACACTGGGCAG
TAACGGAGAAGTTTTACGCAAACCTTGTCACTGCGTCGGAGAGACTCGAA
GAGAAAAGAACCAAGGAGAAAGGATACGACTTCTCGGCGGACTTCCCGAA
GCTATGGTGCGCGGCTAACATGCGTGGCAGCCAAGACGAAAGAGAGATCC
AGTACCGACGGAAGCGGCGATCAAGCGCGTCGAAAAAGGCGGCGAATGTG
TATCTACGTTTCATTACGTTGTGGCAGGCAATACTCCAACGACACCAGGT
GGCCGGCGATGACAGCGGCCGCTCGAAGCTGGCAAAGGCTTTCAACCGAT
GGCGGCTGAACACCTGCGACGCCGCCGTGGACGACCTGAGTGGTAGCTTG
TCAACGCTGAGTAGAGGTGGCACGGCGGCATCAGAAGAGAGTTCCACGTT
CGCCCCCCGGCACATCCCGAGCCTCAAGGAGATGTGGGAATCTGCTGCTG
CTGCTGGAGAGGGCGAGGGAACCCATGTGCACGCCATTATCATGAGGAAG
GCTCAAGCCGATCGACCTCTTCCGCGCGAGCTGTGCGAGGCGTACGAGCG
GGAGATGGTCGAGAGGATCGACCGTCGCCAGGCGGAGAACAACGTTCCCA
TCGTCCCCATGCCCATTTGCTAA
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