mRNA_Ecto-sp6_S_contig96.18662.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18662.1
Unique NamemRNA_Ecto-sp6_S_contig96.18662.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig96.18662.1 vs. uniprot
Match: A0A6H5KJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI1_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 2.640e-70
Identity = 129/154 (83.77%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:   43 MSDLKKQRHHKGSGLSPGDLKSGD----GSGGLGNGLGSLPSKEAMASKGLEAKVDMATHGHQSWALTNLGAWRSQSLGASGEGKPAEFVKSRQREAKRAMLGAAAAA-----AGPGTAPTNATVV*EGADGPVPMVVPAKPPEEMGRSAMVIE 477
            MSDLKKQRHH+G GLSPGDLK+GD    GS GLGN LGSLPSKEAMASKGLEAKVDMAT+GHQSWALTNLGAWRSQSLGASG GKPA+FVKSRQREAKRAMLG AA        GPG APTNATVV EGAD PV MVVPAKPPEEMGRSAMVIE
Sbjct:    1 MSDLKKQRHHRGCGLSPGDLKTGDDSIDGSVGLGNWLGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRSQSLGASGGGKPADFVKSRQREAKRAMLGTAAXXXXXXXTGPGAAPTNATVVEEGADRPVLMVVPAKPPEEMGRSAMVIE 154
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BLAST of mRNA_Ecto-sp6_S_contig96.18662.1 vs. uniprot
Match: D7FJR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.490e-19
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:   43 MSDLKKQRHHKGSGLSPGDLKSGD----GSGGLGNGLGSLPSKEAMASKGLEAK 192
            MSDLKKQRHHKGSGLSPGDLKSGD    GSGGLGNGLGSLPSKEAMASKGLEAK
Sbjct:    1 MSDLKKQRHHKGSGLSPGDLKSGDNSIDGSGGLGNGLGSLPSKEAMASKGLEAK 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI1_9PHAE2.640e-7083.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJR6_ECTSI3.490e-1992.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:551839..554498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1305
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010470.1
Cds size354
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18662.1prot_Ecto-sp6_S_contig96.18662.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 551881..553477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350593.0118752-UTR-Ecto-sp6_S_contig96:551838..5518801682350593.0118752-UTR-Ecto-sp6_S_contig96:551838..551880Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 551839..551880 +
1682350593.0528855-UTR-Ecto-sp6_S_contig96:553477..5540001682350593.0528855-UTR-Ecto-sp6_S_contig96:553477..554000Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 553478..554000 +
1682350593.0625904-UTR-Ecto-sp6_S_contig96:554112..5544981682350593.0625904-UTR-Ecto-sp6_S_contig96:554112..554498Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 554113..554498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350593.0236983-CDS-Ecto-sp6_S_contig96:551880..5519011682350593.0236983-CDS-Ecto-sp6_S_contig96:551880..551901Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 551881..551901 +
1682350593.0335722-CDS-Ecto-sp6_S_contig96:552725..5528541682350593.0335722-CDS-Ecto-sp6_S_contig96:552725..552854Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 552726..552854 +
1682350593.0432694-CDS-Ecto-sp6_S_contig96:553273..5534771682350593.0432694-CDS-Ecto-sp6_S_contig96:553273..553477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 553274..553477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18662.1

>prot_Ecto-sp6_S_contig96.18662.1 ID=prot_Ecto-sp6_S_contig96.18662.1|Name=mRNA_Ecto-sp6_S_contig96.18662.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MSDLKKQRHHKGSGLSPGDLKSGDGSGGLGNGLGSLPSKEAMASKGLEAK
VDMATHGHQSWALTNLGAWRSQSLGASGEGKPAEFVKSRQREAKRAMLGA
AAAAAGPGTAPTNATVV*
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mRNA from alignment at Ecto-sp6_S_contig96:551839..554498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18662.1 ID=mRNA_Ecto-sp6_S_contig96.18662.1|Name=mRNA_Ecto-sp6_S_contig96.18662.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2660bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:551839..554498+ (Ectocarpus species6 EcLAC_371)
CAAGCTCGGACAGGGAGATCGCTACGCCCCATGCCATAATCCATGTCCGA
CCTGAAGAAGCAGGTGATGTTGATTGTTTGGCTCTAGACTTATCGCCTGT
CGTTTCTGCTGTATTTCCGTAGTCATATCTTGCTCAACCACCGTCCCTCG
TCTGCTCCGATTTTAAACATTCAAATGTCGGTCAAATTTACAGCAGTGCA
GCAGTGCCAGGCGTCCACGCGCGTGTTCGTGTATACCGTCACGTGTGTTC
GTGTGTACCTTCGCCGCACCGTCCTCATATCAACACGACTCTTTGACAGA
ATCTCATGTGCACCATCACGTCCACTGCTTTCATAGACGATGACAAGCAT
TGAATCATATGCATCATTTTTTTTGTTTTCCTTTTCCATGAGTTGACGTT
GTTACAGAGTCGAAAGCACGTCTTCGCGGACTCCCGTCTACGTGTATGCA
TTGCATACTACACACACTGTAGGTTAATGAAATGACACCACGAGCACACA
CCCGACACCCGAATGTTCAGCGGTACTAAAGTGGCGCAGGTTTGCACGTT
TCCCTTGATACTTCGTGGGCCGCACCCGTCGCCTCAACTACGGCTCTCGG
GGATTCTCTTGGAAATTGCGAGTACTGTAGTAGAAAGTCAGAGTCGTGTG
GTATTTGTTTGAGCTGCAACCAGCCATTTGCATACCCTCGAGCATCCCGT
CCCCATGTGTTCCCACTTAACTAACCCTCAACCCCGGACGACATGTGAGA
TGACATCGCTGAGGATACTGAGATGAACATCCGACGGTATAGTACTGCTG
TGCCCCACCCGGGCTTCACGCTGCTCACTCAATGATGTGTGCTTGTACAT
GTCGGGGTCCACCTGTTGCGCTCCTTATCGACAACAGAGACATCATAAAG
GCAGTGGACTGAGCCCTGGAGATCTCAAGAGCGGCGACGGAAGCGGGGGG
CTCGGCAATGGGCTTGGGTCACTCCCATCAAAGGAGGCCATGGCATCGAA
GGGCCTCGAGGCGAAGGTGAGACTCAATACACACAACCCCCAGCGAACGG
ATACATTATTCTCCGGAGCTCATGTCAATCTCACGTACGACTGTGAAGGT
ACGGGTACGGGATCAGAACAAGCCCGACGTTCTACTACCGTATACGACGA
CACAAGATAAGACACCCCCTGGACCGATTTTCAAAGCTCGATTACTCCAC
GACCAAGAGGATGTATAAACGAAACGATACGTTTTCGGAGAGATCTCGAC
CAGAAGGCTTCAACTCTGCCGTACTCGGCACCCCTACTCTTCTGGTGTTG
ATAAATTGAGCTTGGAAAACCGGGCCAGGGGTGTGTTATCTTGTGTCGTA
TACGGCATTTCTAACTGAGGAGTGAGAGACATTGCATCGCTCCGACCCCG
CTCTGTCATTCTCCCCTTCCATTCGCAACACAAAGGTGGACATGGCAACG
CACGGCCACCAATCTTGGGCGCTTACGAACCTCGGTGCGTGGCGGAGTCA
GTCGTTAGGCGCATCAGGGGAGGGGAAACCTGCCGAGTTTGTCAAGAGCA
GACAGCGCGAGGCCAAGAGGGCGATGTTGGGGGCTGCTGCTGCTGCTGCA
GGCCCTGGCACAGCACCAACAAATGCAACAGTAGTTTAGGAGGGGGCTGA
TGGTCCTGTGCCCATGGTGGTCCCTGCAAAGCCGCCAGAAGAGATGGGTC
GCAGCGCCATGGTTATCGAGTGAAGTCAGCGGAGGTATTAGATAAAGGCC
AACCCTTAAGATTAGAGGAGTATAATGGGTTCGCCTTCATCTGGTAGGAG
GTACGGGGTGTCATCGACCGTAGCAGTGATGGTGCAGAGCGGGAGCACGC
AGAGCGGCGGCGCTGAGCGTGCGGACGCCTGTCACACTCCCAGACAGATG
GTGAATGACATGGATGGAGGTTTAGAATGATGTGTGGACTTGAATACCGT
GACGAGCTACAGTGTGTGAGATAAGGGAGACGGGGGGGGGGACTGACAGG
CGGCATCAGCATCAACAACCAAATGCCTTGAGTCGAAACGCTGCTACTGC
TGCTATTGGTAGTGTGGCAACATCGTGCGAGTTTGAGGTCATCAGTCTTT
CTCGGTTCGAACCGTACGCTTTTTAGAGTTCGATCAGGGAACTTCATTTC
CTCCGAGCTATTGTGTCTTGTCTCCTGTCTGTTGAACCGACGGCTTTCCA
TTAGTTCGATCAAAGGACGTCGACATGAGGTTAGGGATCACATATTCTTC
CGGTTCGATCTAAGGAGAAGAAAGTCGTTGTTTTGTCTCCTGTCTGTTGA
AACGACGGCGGCCTAACTCCATTATATTGCAAGCACGGGAGTATAGCGTC
GGAGAGCGGGAAAGGACGTCGACATGAGGTTAGGGATCACATATTCTTCC
GGTTCGATCTTAGGAGAAGAAAGTCGTTGTTGATGGCTCGCGCTAACGTT
TTCGGTCAAAGGCACTCGAAGTCAGCTCGCCTCGTATGTTTACGCGTGGA
ATATTACCGAGCGCACAATCCCAGGAGCTCAGGAAGAAACGAATCGACCA
CACACATCGACCAAGAGACTGATGGTCGACCAAGAAACGGATGGACAATG
AAGATAAGCAGGAGGTAAAGGGGCGTAACGGACGGGAGAGAGGGCCGTTA
TCGATATTTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:551839..554498+

>mRNA_Ecto-sp6_S_contig96.18662.1 ID=mRNA_Ecto-sp6_S_contig96.18662.1|Name=mRNA_Ecto-sp6_S_contig96.18662.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:551839..554498+ (Ectocarpus species6 EcLAC_371)
ATGTCCGACCTGAAGAAGCAGAGACATCATAAAGGCAGTGGACTGAGCCC
TGGAGATCTCAAGAGCGGCGACGGAAGCGGGGGGCTCGGCAATGGGCTTG
GGTCACTCCCATCAAAGGAGGCCATGGCATCGAAGGGCCTCGAGGCGAAG
GTGGACATGGCAACGCACGGCCACCAATCTTGGGCGCTTACGAACCTCGG
TGCGTGGCGGAGTCAGTCGTTAGGCGCATCAGGGGAGGGGAAACCTGCCG
AGTTTGTCAAGAGCAGACAGCGCGAGGCCAAGAGGGCGATGTTGGGGGCT
GCTGCTGCTGCTGCAGGCCCTGGCACAGCACCAACAAATGCAACAGTAGT
TTAG
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