mRNA_Ecto-sp6_S_contig96.18652.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig96.18652.1
Unique Name	mRNA_Ecto-sp6_S_contig96.18652.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 8.920e-172
Identity = 262/268 (97.76%), Postives = 263/268 (98.13%), Query Frame = 1

Query:  193 MTRCISMCLVAMAATPLTKAFVAPGSSLSVSALGREGATRSCSKASARGTSSTSCRMTKETETEGAEGDKKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDPFAS 996
            MTRCISMCLVAMAA PLTKAFVAPGSSLSVS LGREG TRSCSKASARGTSSTSCRMTK+TETEGAEGDKKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEAN VPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSG KSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDPFAS
Sbjct:    1 MTRCISMCLVAMAAAPLTKAFVAPGSSLSVSVLGREGVTRSCSKASARGTSSTSCRMTKKTETEGAEGDKKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGVKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDPFAS 268

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.420e-70
Identity = 114/192 (59.38%), Postives = 148/192 (77.08%), Query Frame = 1

Query:  412 KPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            K P WM+N +GVAYAPWMVD FDPEN+AKV A++EAR+  + N V E++G LARDPQ MELSG GL+ K+V+   VEL WKTG+E GN+GF+VS+R  KTDEW +IASYKD+ PLNSKG  GG YT+ D + + GTWVYR+SD++ +G+++DLCQ LIE+QS +D LQ K  VA   +V++AA A+   IDP
Sbjct:   70 KGPTWMYNKNGVAYAPWMVDTFDPENIAKVEAAMEARRLAKLNTVAESVGDLARDPQAMELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKGEQGGRYTFVDPDCEQGTWVYRVSDVNSNGSRNDLCQALIEVQSASDALQAKAAVALFGVVVVAAIASAFLIDP 261

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK)

HSP 1 Score: 187 bits (475), Expect = 1.960e-50
Identity = 95/196 (48.47%), Postives = 123/196 (62.76%), Query Frame = 1

Query:  400 KKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            +K+ K P  MFN +G  YAPWM+D+ D E   +      ARK  E      A GAL  DPQ MELSG GL  K V DE  E++W TG+E GN GFI+++R   +D+WQ +ASY D+ PLNSKGP GG YTY D + + GTW+YR+SD++  G  SDLCQ L+E+Q    ++ TK    G+  V  A  AAG F+DP
Sbjct:   65 EKRRKAPKGMFNAEGKPYAPWMMDSVDAEKAKQAQEDRRARKAAEKKA---AQGALLVDPQAMELSGVGLKTKMVGDEC-EISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKGPAGGQYTYMDSDTEQGTWIYRVSDVNTQGQTSDLCQALVEVQDQGQQMATKAFAVGIIGVFGALLAAGLFLDP 256

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7S0T6E7_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6E7_9RHOD)

HSP 1 Score: 154 bits (389), Expect = 2.780e-38
Identity = 84/210 (40.00%), Postives = 123/210 (58.57%), Query Frame = 1

Query:  385 GAEGDKKKTKPPAW------MFNDDGVAYAPWMVDAF--DPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPP-LNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            GA  + KK K  A       M+  DG AYAPWMV     +P+    +A   +A            +G +A+DPQQ EL+G+GL  K + DE+ ELTW TG+E GN+GF++ +R  K+D+++ +  YK  P    SKGP GG+Y+Y     + GTW+YR+SD+++ G  SDL QTL+E++S  D  + +I V   A++ +A  AAG   DP
Sbjct:   84 GAVAEPKKKKREAKVGGKKSMYRADGTAYAPWMVGQVIEEPDEFVPIAPKTDA------------VGKMAKDPQQQELAGSGLKWKLLGDEL-ELTWATGDETGNVGFMLQKRRGKSDKFELVDDYKSLPATFQSKGPAGGVYSYLGPKPEPGTWIYRVSDVAEDGTVSDLSQTLVEIESDEDSKKQRIAVIVFAVIALALFAAGFLSDP 280

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7S2RGG7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGG7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.410e-37
Identity = 76/188 (40.43%), Postives = 113/188 (60.11%), Query Frame = 1

Query:  427 MFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGAL-ARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            M+N++GVAYAPWMV+  D E         + RK+++       +GA+ + D    EL+G+GL  + V +E VEL+W T  E  N+G+ V +R A++++W +IASY+D+ PL SKG  GG Y++ D N + G W+YRI D+  SG  + LCQ L+E+QS  +     +   G A +     AAGT IDP
Sbjct:   76 MYNENGVAYAPWMVNQIDEEAYLAAKELRKMRKKRDREASEAKIGAMVSSDVAADELAGSGLKYRFVGEE-VELSWSTNTEPDNLGYKVQKRVARSEDWIDIASYEDWAPLASKGAAGGTYSFLDPNSEQGDWIYRIIDVDGSGRSTILCQALVEVQSAGERTLQLVLAGGFAAIFAGLVAAGTMIDP 262

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7S2FT64_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FT64_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.360e-36
Identity = 82/190 (43.16%), Postives = 116/190 (61.05%), Query Frame = 1

Query:  427 MFNDDGVAYAPWMVDAFDPENL--AKVAASIEARKEKEANMVPEALGA-LARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            MFN++GVAYAPWMV+  D E    AK    +    +K A+   E  GA    D Q  ELSG GL+ K ++ E VEL+W T  E  N+G+ V +RAA+++EW  +ASY+D+ PLNSKG GGG YT  D   + G W+YRI D+ ++G  + LCQ L+E+QS  +++ + +   G A +     AAG  +DP
Sbjct:   90 MFNENGVAYAPWMVNQIDEEAYVTAKELRKMRKNAQKAADASKE--GAYFTTDLQADELSGLGLNYK-LNGEEVELSWSTDTEPDNLGYKVQKRAARSEEWFTVASYEDWAPLNSKGKGGGTYTLIDPESETGDWIYRIVDVDRAGRNTVLCQALVEVQSQGEKVLSTVLAVGFAAIFSGFMAAGGLLDP 276

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7S3ZJZ7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJZ7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.470e-36
Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1

Query:  388 AEGDKKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGAL-ARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            A   K   K  + ++N++GVAYAPWMV   D + +A   A     K +E   + E  G +   D    EL+G GL AK +S++ VELTW T +EE N GF+V R+A    +W E+ASY+ + PL SKG  GG Y+Y D  V  G W+YRI       +++ +CQ  + +++   +LQTK+ V G A +++ A AAG  +DP
Sbjct:   78 ANAQKIAKKKRSNLYNEEGVAYAPWMVRQVDEDAVAAARAMRGYEKRRERIALEEKQGTINILDAASSELTGLGLKAKVLSEDEVELTWSTDDEEANRGFLVERKAVGYSDWDEVASYQSWSPLKSKGTLGGAYSYIDATVSEGEWLYRIVAEQSDNSRAIVCQVGVSVENSGQQLQTKLVVGGFAALVLGALAAGALLDP 278

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7R9W2U1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2U1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.050e-36
Identity = 83/197 (42.13%), Postives = 115/197 (58.38%), Query Frame = 1

Query:  406 KTKPPAWMFNDDGVAYAPWM-VDAFDPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDPFA 993
            KTK  + + N  GV YAPWM + A D + + +V       + K         G L  D Q  ELSG GL++K +  E VEL W T  E    GFIV RR AKT+E++ +ASY+D+ PL SKG  GG+Y Y D+ V  G WVYRIS++  SG ++DLCQ L+E+Q+  ++        G+A+  +AA  AG  +DP+A
Sbjct:  136 KTKKISNLRNAQGVDYAPWMGISAEDEDKIRQVVKEKAEARRKREEQERSVSGNLYYDSQAQELSGTGLNSKIIDGE-VELEWATRTERDTKGFIVKRRPAKTNEFEPLASYEDWGPLQSKGAEGGVYRYLDNTVTPGGWVYRISEVDNSGMEADLCQCLVEVQTEEEQKAALFAGVGIALFGVAAVVAGLVLDPYA 331

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A448YZW3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZW3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.950e-36
Identity = 84/201 (41.79%), Postives = 119/201 (59.20%), Query Frame = 1

Query:  406 KTKPPAWMFNDDGVAYAPWMVDAFDPENLAKV-------AASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFIDP 987
            K K  + + N +GV YAPWM     PE  A++       A +   RK++EA +     GAL  D Q  ELSG GL+ K VS+  VELTW T +E    GF + RR A+T+++  IASY+ + PL SKG  GG Y+Y DD +  G WVYRI++   SGA++D+CQ L+E+Q+  ++    I   G+ ++ I A AAG  +DP
Sbjct:   83 KMKRASNLRNANGVEYAPWM--NITPEAEAEIKTVMKQKAEARRKRKDQEAGVS----GALLMDSQAQELSGGGLNCKVVSNNEVELTWATSSEASTKGFAIKRRKARTEDFVTIASYESWGPLASKGVDGGQYSYLDDTISPGGWVYRITECETSGAENDICQALVEVQTEDEQRGAVIAAVGIVVLAIGAFAAGIMLDP 277

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BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Match: A0A7S2ZH05_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH05_9RHOD)

HSP 1 Score: 145 bits (367), Expect = 2.400e-35
Identity = 82/196 (41.84%), Postives = 110/196 (56.12%), Query Frame = 1

Query:  400 KKKTKPPAWMFNDDGVAYAPWMVDAFDPENLAKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPP-LNSKGPGGGIYTYADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLAIVLIAAAAAGTFID 984
            KKK    A M+  DG AYAPWMV A            IE           +A+G+L  DPQ  EL+G GL  K + DE++ LTW TG+E  N GF++ +R  KTDEW +IA +   P  L SKG  GG Y++ D + + GTW+YR+SDI K+G +SDL QT++ELQS  ++      + GL   L+   A    ID
Sbjct:   93 KKKVGGKASMYRSDGTAYAPWMVGAI-----------IEDVDSMGVKSKSDAVGSLRTDPQAQELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKGAQGGDYSWLDKSPEPGTWIYRVSDIDKNGVQSDLSQTIVELQSEGEQRVQIAALIGLIAFLVLFGAVAANID 276

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig96.18652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJQ9_ECTSI	8.920e-172	97.76	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835Z5V8_9STRA	1.420e-70	59.38	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6V1RAY1_HETAK	1.960e-50	48.47	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S0T6E7_9RHOD	2.780e-38	40.00	Hypothetical protein n=2 Tax=Erythrolobus madagasc...	[more]
A0A7S2RGG7_9STRA	9.410e-37	40.43	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2FT64_9STRA	1.360e-36	43.16	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S3ZJZ7_9STRA	1.470e-36	39.30	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]
A0A7R9W2U1_9STRA	2.050e-36	42.13	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A448YZW3_9STRA	6.950e-36	41.79	Uncharacterized protein n=1 Tax=Pseudo-nitzschia m...	[more]
A0A7S2ZH05_9RHOD	2.400e-35	41.84	Hypothetical protein n=3 Tax=Rhodosorus marinus Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig96	contig	Ecto-sp6_S_contig96:506250..515144 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	505.0
Seed ortholog evalue	2.2e-140
Seed eggNOG ortholog	2880.D7FJQ9
Model size	2402
Hectar predicted targeting category	chloroplast
Exons	7
EggNOG OGs	2CYRZ@1,2S61B@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_010550.1
Cds size	807
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig96.18652.1	prot_Ecto-sp6_S_contig96.18652.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig96 506442..513741 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350592.3525753-UTR-Ecto-sp6_S_contig96:506249..506441	1682350592.3525753-UTR-Ecto-sp6_S_contig96:506249..506441	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig96 506250..506441 +
1682350592.4504542-UTR-Ecto-sp6_S_contig96:513741..515144	1682350592.4504542-UTR-Ecto-sp6_S_contig96:513741..515144	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig96 513742..515144 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682350592.364642-CDS-Ecto-sp6_S_contig96:506441..506573	1682350592.364642-CDS-Ecto-sp6_S_contig96:506441..506573	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 506442..506573 +
1682350592.3870926-CDS-Ecto-sp6_S_contig96:508233..508395	1682350592.3870926-CDS-Ecto-sp6_S_contig96:508233..508395	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 508234..508395 +
1682350592.39829-CDS-Ecto-sp6_S_contig96:509183..509282	1682350592.39829-CDS-Ecto-sp6_S_contig96:509183..509282	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 509184..509282 +
1682350592.4086106-CDS-Ecto-sp6_S_contig96:510769..510951	1682350592.4086106-CDS-Ecto-sp6_S_contig96:510769..510951	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 510770..510951 +
1682350592.4186814-CDS-Ecto-sp6_S_contig96:512245..512326	1682350592.4186814-CDS-Ecto-sp6_S_contig96:512245..512326	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 512246..512326 +
1682350592.4282124-CDS-Ecto-sp6_S_contig96:512818..512885	1682350592.4282124-CDS-Ecto-sp6_S_contig96:512818..512885	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 512819..512885 +
1682350592.4378824-CDS-Ecto-sp6_S_contig96:513657..513741	1682350592.4378824-CDS-Ecto-sp6_S_contig96:513657..513741	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig96 513658..513741 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig96:506250..515144+
coding sequence from alignment at Ecto-sp6_S_contig96:506250..515144+

protein sequence of mRNA_Ecto-sp6_S_contig96.18652.1

>prot_Ecto-sp6_S_contig96.18652.1 ID=prot_Ecto-sp6_S_contig96.18652.1|Name=mRNA_Ecto-sp6_S_contig96.18652.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=269bp
MTRCISMCLVAMAATPLTKAFVAPGSSLSVSALGREGATRSCSKASARGT
SSTSCRMTKETETEGAEGDKKKTKPPAWMFNDDGVAYAPWMVDAFDPENL
AKVAASIEARKEKEANMVPEALGALARDPQQMELSGAGLSAKRVSDEMVE
LTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTY
ADDNVDLGTWVYRISDISKSGAKSDLCQTLIELQSGADELQTKIGVAGLA
IVLIAAAAAGTFIDPFAS*

mRNA from alignment at Ecto-sp6_S_contig96:506250..515144+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig96.18652.1 ID=mRNA_Ecto-sp6_S_contig96.18652.1|Name=mRNA_Ecto-sp6_S_contig96.18652.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8895bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:506250..515144+ (Ectocarpus species6 EcLAC_371)
TACATCTCCCTCGGACTCACCGCCAGGCCGTCAGAGAGGTTAACTTTCCC
TTGCCGAAGTCAGAATTCCTCCCTGGAGTCATCGACAGCGTCACCCAGCC
CCCATAACGTTTATTGTCTACTGTGGAGAACAACAGATCGGCAAGGGGGG
GGAGAGCACACACCCAGAACAGCCAACGCAGACATCAGAAACATGACGAG
GTGCATCAGCATGTGTTTGGTAGCAATGGCAGCAACGCCACTGACCAAGG
CCTTTGTGGCGCCAGGCAGCAGCCTTTCCGTGTCGGCGCTAGGACGCGAG
GGCGCCACCCGCTCGTGCTCGAAGGTGAGCAGTGTTGCGGCAGTTTTTTC
CTCGGAAACTCTCTCTCTGCGGTGGTATCCTTGCTAGGGGCGCGTACGTA
AACAGACCAGTAGACGTCAGCGTGGACATCCGGCATGTATCGTTCATGGA
GACTTGCAATGCACACGCGTTTGCGGTCGTTCCTGCGACAGCAACCACCA
ATGTGTCGCTGTGTTGTTGGAGTAAAGTGACTTGCGTCGGTACTGGTCCG
GCCCCACTCAACAAACACACGACTCCGGTATGTATGCTTCAAAAGTAGCT
CCTTTCGTGTCTTGTCCTTCGAGACCGCAAGCAAGCGCAGTCAACATGAA
TGTTCTGCTGTTACGCTTATACCACCTCGGAGTACATGTATTGGGACCGA
ACACACTAAAACCATGCTGCCGTTCGCGAAACACGCATGTGACCGCTAGA
GGCGAATCATTGATTGAGTGTCATTTTTTCCCCCATTATCCACGTACCCT
GGCGGTGGTTTCTGCTCTCTCCGCACATGACATGATCCCAATGTTTTTTG
CAGCAGGAGCAGTTCGGACAGCAGTACCAAGAGCAGTAGTGGGTCGGTGG
GTGGGAGACAAGGGCAGAAGTAGATACCGTAACTTGCGCGCGATTGCGCG
TCGAGTTCCGTAGGCGGTAAACGAAGCTGCACACCGGAAGTACATAGACA
ACGGGGTTTCGTATCCCTGTCGCTATCCCTATTATACAATTGTAGTATGT
TGTACAACCAGCATTTGACGGCGCGCGCGCTCACAAGCCGATATTGTTTA
CAACAGCATCACGTCGCAGACAAACACTATTTTAACAGCTCAGCGACGTC
CAGCCTCTAGCCGTTAGACCATTGACCTCGCATCCCTAAATTGCCGGGAC
GGAGCGATATGCATGGTTCCCGCCGGTCTATTGTAGGCTAAATTAACGTT
TCACCAGGGTGGACCAGCAGCTGGCCATCATTGTTGCGTTTGCTTTCGTT
CGACCATTTACCTCGCATCCCTACCAAGCCTGGACGGAGCACGCCGGTTT
TCACATGACCAAGCGCGAAGCGCCGTGAGGTATTCAGCGAGTCGCATGGA
CGGTGCGCTGCATCCTGCTGAGGATGTTCTGCATCTTGTGTTTACTTGCT
TGCATATGCATATGGATGACAGCTGCGAATGACTTCATTTGTTTCCTGGT
GTTTCACTTCCAGAGACAGCTATAAACGCTGTGTAACTGCTTCGAGGGTG
CTCGACCAATTTCAACACACCGTGGTGCGATCATCCCCTTTGCGCGGAGT
GAGGGTTCTCGACCACGCACAACATGATCTACTCGACCACCGCTGTAGGT
TTCTTAAAAAAAAAACACAGGCGAAAAAGAAAGCGGTAACCTGGTTGTCG
AACTCACGAAGCGATCGGCGTGTTGTTTTTGAACGTCATGGCCCAAGCGA
AGAAAAACCAACCCAGATCGCACTCACCGGGAGGGAGAAGGCATGATACA
ATAGGAAGCTTTTGTTGCGGATCGCTCAACCAAGCCAAGCGTTTCATCTC
ACGTGACATGAACCCGTTCTGCTTGTGTTTGTCTTTTTCTGCCCCCCAAA
AAACACGGATTGTCGTTGGCTATGCCACGTGCTGCCGTACGTGGGGCACG
ACGGCGGTGATGCCACACGCTGCTCCTCTTGTAGGCCTCAGCTCGCGGCA
CCAGCAGCACCAGCTGCAGGATGACCAAGGAAACGGAGACGGAAGGAGCC
GAGGGAGACAAGAAGAAGACCAAGCCCCCGGCGTGGATGTTCAACGACGA
CGGTGTTGCGTACGCCCCGTGGATGGTGGATGCCTTCGACCCCGAGGTGC
CTCAACAGTAGTAGTTTGATGGTTTCATGTATTTACAACGGGCCTGCAGT
TAGGAAATGTTTCGTGAAGAAGCAGAGACTCAACTTTTAATCTTCACCAC
AAGAACAAGATATCTGGGTTAAGAACACACAGTTAGGTCAACGGTGGATC
CTACTCTAAACTCTACATAGTAGCCTGTAGATGCAACAAGAAACTGAGCC
TCGACCGGATTTTGACGTTTTTTTGTCTCCGAACCCGTGTTCGTTCGCGG
GCTTTGCAGTATCGCTCTATTAGGAATTATTCATACAACCAAAGAGAGAC
TATCCATTCGAGACGAGATATGACCACAGCAGTCTCTTCTGTTCCCCAAA
AGGCGTCGTCACTTTCTGAATGACTCTCGAACACTACGCCGGGTTTTAGG
AGAAAATTTCGTACACGAGAACCCGCCGGGTTGCCGTAGAGCTCTGCCTG
GGTACAGGCAACGGAAAACAACTGTAATATAATGAGGGTGCAATGCCCTT
GAGTCTATCGGGTGTTCACCTGCCGTGGAAACAAGGGAAACATCCGACGA
GATTGTTTGCCCATCCGTCGCGTCCTCCGGCCCCAATCAACCTGCGTTGC
CTGGTGGATTACTCACTGTCAGTCATTAGCACTTCTTGGTTGTATCTGGC
GATGGCCTCTGTATGGAACAGCAGTGTGCAGATTAAACCAAAGCAAGGTT
TCTATGCAAGAAAAACAAGAACTAAGAATCCCTACCAAGCAAGGCTACAT
CCCAACACTGCTGTCTGCTCCGATTCTTTTACAGAACCTGGCGAAGGTGG
CAGCCTCGATCGAAGCTCGTAAGGAGAAGGAGGCCAACATGGTGCCGGAG
GCCCTGGGGGCCCTTGCACGGGACCCGCAGCAGGTAGGTTTGTCGTCAAA
TCTAACGCGGAGGAGAGTGGCATGGGACGGGAGTGTGCCTTCAGGAGGGT
GTTCTGGTACCTGCGTTTTGTGTTCAGCCCTCGGCGAGCCGGTGGCGAGA
CAATATGCTGACTCGAAGGGAAGCACGATACCATGGGCTTTGTACCATAG
GTTGCTTAAGATACCACACCCCCTGGAACGATTTTCAAAGCTCGGCTGCT
CCACGACGAAGGGGGATGTCGCAATCAAATGTTACGTTTTCGGAAAGCCT
CCCGGCGAGAGGCTTCCGACGCCGCCATTTTCGGCACCGTCACTATATAA
TAGCTTGTTTTTCCTGCAAAGTAATCGAGCTCTATATACCGGTCAAGGGA
GCGTGGTATCTTATGCAACCTAGGGTTATGTACTATTGGTTTTGTCGGGT
TTTTCTTATTTTTTTGACACAGGAGCAAAGTAGCCTGAAGGGACGTATGT
AGTGGCCGGGGTAGTGGCATGCGGGCTTATTGTTTTGCTCGCGAGGAAGC
AGCGAAACGCCAAAAGTCGTCGTTTTTTCGCAGCCCCAAGAGACGTTCGG
GCACCCGAGCCAATCAAATGGCACCGCTGCCCCCTCTTCCTGCCTACAGT
ACTACTGTAGCGCCGACAAATTTTGTCTTACCCCAAAACTGAAATTTAAT
ACTTTTGTTTTCTTACGAAAACACACCAAATTCGTCTCTTCCGCCTCCTC
CACAGATACGAGTCTGGGATAGACTTGAAAACTTTTTCATAGAGTTGTGC
GATGACCGAACTGTATTGCTACCGTTCCCCGAGCAGCGATATCTCCTCTG
TGGGTAACAAGCTATTTAGTTTATTTTTGTCTTGCCCGAACCCAATGATA
CATAACTGCAGCCAACTTAGGTTGATGGTTGGCAGCTGAAACAACAACGG
AGATGGCTCCTCCAGGGATGCTTACCCTCAGCTGAGATGAACAGCAGTCG
ATGGCCCCAAGGTCAGGCGGGCAGGCATCGCGAAATACAGCAGCCGCTCG
TGTCCCGCATTCCCGCCGTGCACAAAGCTTCTTTCCGTGAAGAGGGTATA
GCTCGAGTGCCTTTGCTGCAGAGTCTGTCTCAAATGATTCCTCGCAATAG
ACACACACATTTCATTCGTCAGCCGGGTAGCGCTGTCGATGCTAGTATTG
AAGCCACACACACGTACTGTCGCGTTTTTCATCCCGCTGCTGTACAACCT
ATTTAGTGTCCTTTCTGTGGTCAGCCGGTTAGCGCGGTCAATGGTATGCA
AAGATACACACACGCACAAAGGCACACCACCACACATTTTTTTTAGTTTC
TTTTTTAGGCAAGTTAGCCTGTGACCACAGGAATCCCTCGGTCAAGCGTT
TGATCAGTACGGACAGATAATGGTACTGGGTAGAGAGATCGGAACGGTTT
TTTATTGTGAAAACAGCAAATAACAACAACGACAACACCCTGGTTTATCG
CCGTCTTTCCCTAAATACAGATGGAGCTCTCAGGCGCAGGCCTGTCCGCC
AAGAGGGTGTCGGATGAGATGGTAGAGCTAACCTGGAAGACAGGAAACGA
GGAGGGAAACATCGGTTTCATCGTCAGCAGGCGGGCCGCTAAGACGGACG
AGTGGCAGGAGATCGCATCGTACAAAGACTTCCCCCCACTCAACTCCAAG
GGGTGAGTGAATCGGTGAACAAACGGCAGGTCGGGGTCCGGGGAAATCTG
CTTGCGATTTGCCGGTGAAGGTGGTGGTGGGTTTAGACCCCCGTGGTATT
AACAAGGTGCCAAAAATAAAATTAAAAAAAACAAAATCGAGCTGCGATTG
GTCGAAGACCAAAAATACTGCCGTTCAGGTTTTCCGGCAGAGCTCACTTT
TTATTTCCTGAAAATGAAGAAACAACAGTTGTCGAAATCAAAATAGCATC
AAATATGAACACCCCCCCTCCCCCCCCGGGCCAACGGGGCCGAGATTGAT
TTTGATCTTTGGCGCTTCGTTTGCAAAGGGCCTTAGAGCCGTTGTTGGGC
TTCCGTGGAGGGGTTGTAGTTCGTGAAGGCAGGGGCGACCCGAATGGTTC
CGTTGTGTGATTCCTCGGGAGAACGAGCTGGTCAGTTTACTACGACCGAA
AGAGCCGAAGACAGGGAGGGAGGGCTCAGCCCGTATGCGTAGATGGGTGA
TGATCAACGCACGAGAGGGTGCTAATCGGTTGGGTATGAAATCAAAGGAG
GCGTTTCCAGTCTAGTTGGCCTCAGTTCGGGACCGGATTGTTCCTTTTCT
ATCCGGGAAGGAGAGCCGAGTCTGCCGGCAAAATGGTTCTGTATTAGATG
ACGACCGGCGAGTGCCAAATTGGCGCGCTCGTACTGCTGTTTTTCTTGAC
GGGCGCACGTGTTTCGGTGGTACAGCAACACCCCCGCTTGTTTGCTTTTA
ATATGTGCCGATTGTTTTATTCCGAAAAGAGCGAAGTCCACCCTAAAACG
AGTCCCAAACCTTACAGGTGCAACGCCTAATAAAACGAGAAGTGGCTAAC
GGATTTTAGTTGATAACACCTAAGATATGTATTTGACCATATAGTTAAGT
TGCTTGCGTCAAGGTTCTCGCAACCGACAACACAACCAGTAGTTTAAGGA
GTGTGGAGTACACGCCGGGTGTCCCACCCTTGTGGGAAGGAACCACGAGG
TTACCAGAAGAAGAGAGTGCCAGAGCGTCTCCAAGGCGCCGTACCGCACA
AGACGGCGAGCGCCGAATGGCCTAGCCAGCAGGCGCCGAAATGCATCCGT
GCTCACTGGCGCTCACCCGTGGCAGCGCCTCGACCACATGGTCTTATCTG
GCGCAGCCACCACATCTGTGGGTCGTCATGCTATGGCGGTATTCACCCCT
GTGCTTCGCCTTGCTTACTGGCGGCGTCAGGGTCGTGACGTGCGTTTCGC
CCCCCTCCCTTTTTTTTTCTTTTTTTTTGTATTGCCGGTGAGACAGGCCG
GGGGGCGGCATCTACACTTACGCGGACGACAACGTTGACTTGGGGACATG
GGTGTACAGGATATCCGACATCAGCAAGTGAGATGAGACCTACCGGGTAT
ACTGTTGGTTGTTGGTGTTGATGTCATTGCTGTTGTTGTTGTTGTTCTTC
TTAACTTTGGCGTTGACATACTCGTGGATCTTGTTGCTGATGCAGTTGCT
GCTGTTTTATGTTCATATGGTGATGACATACCCGACATCAGCAAGCGAGA
ACTACCGGGTATCGCTGTTGTTGCTGCTTGCTGTTGTTGTGTTTGGGGTT
GGTAGTGTTGATGTCCTTGCTGTAGTTCTTGTTGACGTTGACGTTGGCAT
GGTCGTGGATGTTACTCCTGATGCAGTTGCTGCTGTTTCTGTTACGCGGT
GATGGCATTGGCGGCAGCATTCTCGCACCTTTGTATGCTGCCTTCGTTGT
TGCTTCTCCAGTTGGTGATTGATGCACCGAAAGTATTAGCCATCAAGCGG
TCGTTTCCCTCATGGTGCGTTTTTCCACGCCGCCCTCACTCGCATCCGTG
TCCATCCATCCTCTCGCAGGAGCGGTGCAAAGAGCGACCTTTGCCAGACG
CTGATCGAGTTGCAGAGCGGCGCCGACGAGTTGCAGGTGAGAAACTTTAG
TGGCCCCACACGCGTGCGGGAGGAGAGAGAGGTGGCGGGCTTAGTTTCTG
CCTGCCTTGAGTGATTGTGTTGATGGGGTGCTGCTACCTTCGGGAGGGAG
AGCGAGAGATCCATTCGTCCGGGAGGGGCGTAGACTCTTTGTGTTTTGCA
TGCCTTAGCGGCAAGACCATTGACCACGCGCCCTCGAGAGAGGGGGGGGG
GGGTACTACCCCCGATGAACATGGCAGGCTAGAGGCGGGCTGACACTAGT
ATCGGCTGGAGGCTGGTGGTAACGGCCGAGATGTGCTGGAGCGATGAGGA
CGGTGGGCGCGGGGGAACCGTGATCTTGTGGAGGTTTTGACGTCTTGCTT
TTGAATGTCCTTTCGCGATCAAGGCTACGCCGCATCTGGTACAGTCCCGA
CCACCGTCTTACAGTACTTGGATTTCTTCGGATATAGTTTTGCTCTCGAA
GTCAAATTCGCAACCTCCCAATTCCAACCCGTTGGTAGAATAACGCGAAC
CGATTCTCTCGTACAGGGTTGACCGAGACGGTTTCGTATTCTGCAGTAAG
CGTGAGCTTTCCAGCACAGCTGGATCGACATACCCCGCTGCTTGGGATAT
GTCCTTGCTACCGCTGCTGTGTTTCGGCGGTGTTTGGGTCTCGCCCCGTG
CCGGGCCTGACTGTGTTGGCATGGCACTACGTAGCTCATCTCTTCCTCCC
TTCCCCCCCTCGCGCTTGCGGCCCGTTACTGTCGCTACCGCTGCTGCTAC
CGCCACAGACGAAGATCGGCGTAGCAGGCCTCGCCATCGTGCTGATCGCG
GCGGCCGCGGCAGGAACGTTCATCGACCCCTTCGCATCGTAGATCTCGTA
GAACAAACCGTCGCGTAGTTAGGACGTGCGTGTCGCGATGCCTTCGGTGT
GAAACTGCCTTTAGCGCCATACTGAGTGATCGCAGCCGCTGCATATGGTG
TGTGTGGCGTATGGAGGGCGATGGACAGCGATGGACCGGCTGTAGGGAGC
CTCGGGGTAGCACGCTGGCAGGAGCGGGGGGACTTTGAAACAGTCTTCTT
GTTGGACCGCTAAGCGGGCGGAAGTTGGACCGCGTCGGCATGTATCATGC
CGTGGTGTCCTCTTCTTACGCGGTGCTGCTTGGCGTGCAGGCAGATGCGT
TTTTTTCATGAAAACCAATGTTCCTGTTGCTCGCAGGAGTAGACAGCACG
TGCGCGCCGTTTGTTGTGGGGCCTCTCTTTTCTTGGGTTGAGTTCTTGTG
CTATTATGGCGAAACGTGTATGCGGGGGGAGACCCGATTGGCCGGCGGTT
TCACGCAGGAATGTCATGATAGAGAGCGAGACGTAGCCGCGGGCACAGAG
GTGATTTAGTAAATAGCAACTCAGGGTGTTTGGCGCACGTTACACTTCGT
TGTCTTTTTAGTGTGGGTGATAACAGCGGCGAAATTTAGCATAACGTAGT
AGGCCGGTGTTGCTGAATACATAGCCCTCGTCAATTTCGATTGCCCCGAA
ATTGTTAGAGCCTTTTAAAGACGAGGGGGGTGATACATACATAGGTCTGT
TTGATGAGGACGGGCGGGGGGATCGGGTTGTCCTTCACCCACGAAGAGAA
GCAGCGACCACTTGGTTTTCCTCCCAATGAATTTAATGTCACAGTATGTT
GATCACTGGGAAATGGCACATGCGCTTCGAAGGGCACGTTGTATGCTCTG
CATAGGAGGGGTGAGGGACCCTACGTGCGGGTTGCTGCTACCAATCGGTT
GGCTCCCGCGTCTTGCCTGGCATACCCCGTTCCTGCCTGGGATGATTTGT
TCTACATGGAAGGCTGCCATGAGAGAAAGAGCTGGCCTTCATCTGGCGTC
GTCATCTTGCGATATGGATGTAGGGGAAAGGAAATGCACGCCGCCGGTGT
TGGTGTGTGTGCGCGCGCGTTTTCGGCTCACTTACCTACTATTCTGGCGC
CAGCCTTAACTTTCGGTGTAGATTTTAGGTACGATTGCGAAAACAATTTC
AATGGGAACAAAGTCGAGATTCTGGCGTTCTTAGCCAAGGGCGTGAAATC
TCCCAGCTTTTCGTTTTCCCCGCCCAACACAACGCGGACAACTCCCAGAC
AGGGGTTGCATCTCTGTCCGCAATCCTTAACAAATGTCTGTCACGAGCTC
AAGTAGTGCCGGAGCAACAACAACAGCAGACGTGTGGTGATGCCGCAAGC
TCACCGCACGGAATTACGTACATCATCCACGGTGTCGAGTGCCGT

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:506250..515144+

>mRNA_Ecto-sp6_S_contig96.18652.1 ID=mRNA_Ecto-sp6_S_contig96.18652.1|Name=mRNA_Ecto-sp6_S_contig96.18652.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:506250..515144+ (Ectocarpus species6 EcLAC_371)
ATGACGAGGTGCATCAGCATGTGTTTGGTAGCAATGGCAGCAACGCCACT
GACCAAGGCCTTTGTGGCGCCAGGCAGCAGCCTTTCCGTGTCGGCGCTAG
GACGCGAGGGCGCCACCCGCTCGTGCTCGAAGGCCTCAGCTCGCGGCACC
AGCAGCACCAGCTGCAGGATGACCAAGGAAACGGAGACGGAAGGAGCCGA
GGGAGACAAGAAGAAGACCAAGCCCCCGGCGTGGATGTTCAACGACGACG
GTGTTGCGTACGCCCCGTGGATGGTGGATGCCTTCGACCCCGAGAACCTG
GCGAAGGTGGCAGCCTCGATCGAAGCTCGTAAGGAGAAGGAGGCCAACAT
GGTGCCGGAGGCCCTGGGGGCCCTTGCACGGGACCCGCAGCAGATGGAGC
TCTCAGGCGCAGGCCTGTCCGCCAAGAGGGTGTCGGATGAGATGGTAGAG
CTAACCTGGAAGACAGGAAACGAGGAGGGAAACATCGGTTTCATCGTCAG
CAGGCGGGCCGCTAAGACGGACGAGTGGCAGGAGATCGCATCGTACAAAG
ACTTCCCCCCACTCAACTCCAAGGGGCCGGGGGGCGGCATCTACACTTAC
GCGGACGACAACGTTGACTTGGGGACATGGGTGTACAGGATATCCGACAT
CAGCAAGAGCGGTGCAAAGAGCGACCTTTGCCAGACGCTGATCGAGTTGC
AGAGCGGCGCCGACGAGTTGCAGACGAAGATCGGCGTAGCAGGCCTCGCC
ATCGTGCTGATCGCGGCGGCCGCGGCAGGAACGTTCATCGACCCCTTCGC
ATCGTAG