mRNA_Ecto-sp6_S_contig96.18622.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig96.18622.1
Unique NamemRNA_Ecto-sp6_S_contig96.18622.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 669 bits (1725), Expect = 5.510e-234
Identity = 478/488 (97.95%), Postives = 480/488 (98.36%), Query Frame = 1
Query:    1 MANFDERTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLKRLLRSAPADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQGAECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV 1464
            MANFDERTAALGGTEEQLFKLV+RHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLD AVQGGNSKTVS  LEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXX VVTRS+SAEPLKRLLR APADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQGAECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV
Sbjct:    1 MANFDERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXXVVTRSSSAEPLKRLLRRAPADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQGAECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV 488          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 5.810e-67
Identity = 272/505 (53.86%), Postives = 324/505 (64.16%), Query Frame = 1
Query:    1 MANFDERTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAA----YRGKPC----------VIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLKRLLRSAPADRAWRRRGPLVLSRVRAEREEEDSR---VVGGKVLRQGAECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV 1464
            MA  ++RTA L G E+ LFKLV+  A  AQW+EWLRAPLEHAVAEG+  LA  LL+AGADG AGW+GC  R+LL AA +GGN + V   L+ G + +++ V+G + R+ LHRA+AGGHT  ARVLMLAGA V LLD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       YG     SPL  A      AMTR LL++GADV S +  GFTALH AA    +   P           VI AL+ AGADLEARS +V+   HR    GLTPLH+AA+ ++++   MA LL++GADVNA   +G TPLH++   P  +      D                      +V  SN ++ L+ +L  AP DRAWRRRG L++ R         SR                 GGD+   R   GG+LARVV L+ + VFR +VGF+
Sbjct:    1 MAAEEDRTA-LNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGADGSAGWEGCGDRTLLQAAAEGGNEEVVLTLLDNGGVEELDVVSGDNERTALHRALAGGHTEAARVLMLAGADVGLLDVKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGRLRDRSPLFFA--HENVAMTRTLLEYGADVLSFNHLGFTALHTAATEVFWHFSPILVKYAWANAKVIGALLEAGADLEARSGEVFRDSHR--FTGLTPLHVAAYHQKAS---MAELLRKGADVNAESDNGLTPLHMLCMKPRLNPDDT-ADLLLRWGADETAIDNEGYTPKARIVGSSNGSQALRHMLDKAPVDRAWRRRGTLIMCRALPGIVSTTSRRGXXXXXXXXXXXXXXRGGDSVSRRRGLGGLLARVVELD-DAVFRTVVGFL 495          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 4.330e-63
Identity = 225/362 (62.15%), Postives = 265/362 (73.20%), Query Frame = 1
Query:    1 MANFDERTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLP---GHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIV 1077
            MA  ++RTA L G E++LFKLV+  AT AQW+EWLRAPLEHAVAEG++ LA TLL+AGA+GG+GW+GC+ R+LL AA +GGN + VS  L  G L +++  +G   R+ LHRA+ GGHT  AR LM+AG+  SLLD+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             GADP+ R+G S  +SPL LA   R  A  R LL+HGA+V S D  GFTALHWAA       I+ LV AGADLEA SS V L    G  +S VG+T LH+AA+F   N   MA LL+ GA+V+A   +G TPLH+V
Sbjct:    1 MAAKEDRTA-LKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRTALHRALIGGHTGAARALMVAGSDTSLLDTEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDRLTVAEALLTAGADPNVRFGKSKIYSPLFLAVG-RSLATMRVLLQHGANVNSPDDLGFTALHWAADFDASAEIDVLVEAGADLEASSSSVHLKDKIGGINSFVGITLLHVAAYFH--NCVAMAALLRNGANVDAESDNGLTPLHMV 358          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.090e-47
Identity = 239/457 (52.30%), Postives = 281/457 (61.49%), Query Frame = 1
Query:    1 MANFDERTAALGGTEEQLFKLVTRH----ATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLKRLLRSAPADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQGAEC 1359
            MA  ++RTA LG  E  L  +   +     T AQWAEWLRAPLEHAVAEG++ LA TLL AGA+GG+GWKGC+ R+LL AA +GGN + V   L+   + +V+AV+  +  + LHRA AGGHT  ARVLMLAGA V L+DS   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   GADVKS D  G TALHWAA+ G   V+ ALV  GAD+EAR     L   R S  G T LH+AA++   +T  M  LLQ+GA+ NA D  G  PLH+V   P   S A   D                      + +   S   L+RLL +APA RAWRRRG +++  +RA+  E  +     +  R+   C
Sbjct:    9 MATEEDRTA-LGRLETILLSINCSNWCGRTTSAQWAEWLRAPLEHAVAEGDKDLALTLLNAGANGGSGWKGCNDRTLLQAAAEGGNEEVVRTLLDIEGMEEVDAVSSDEGGTELHRAAAGGHTNAARVLMLAGASVGLVDSKGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXGSGADVKSVDRLGHTALHWAAFDGIQEVVHALVEVGADVEARCLAQLLSEQRHSLKGSTSLHVAAYWETLDT--MLALLQKGANANAPDDDGHGPLHLVCKYPKARSVAV-ADLLLRWGAEETATDNDGNTPADFIQSSDESDGRLQRLLANAPAGRAWRRRGMVIM--LRAQGVEASNAAPVYRACRRRGRC 457          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: A0A6H5JQI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.510e-43
Identity = 124/332 (37.35%), Postives = 152/332 (45.78%), Query Frame = 1
Query:   82 PAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGS-DRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHI 1074
            P QWAEWLR PLEHAVAEG++ LA TLL+AGA GG+GWKGCD  +LL  A +GGN   V   L+     +++AV+G  D+R+ LH A AGG+T  AR+L LAGA    L                                                                                            G DP+ RYGS   FSPL LA  +  AAMTR LL  GADVKS    G  +LHWAA  G   V++ALV   A +EARS  V L        GL PLH+AA++ +  T  +  LLQ G + N  D  GR PLH+
Sbjct:   40 PVQWAEWLRIPLEHAVAEGDKDLALTLLKAGASGGSGWKGCDDPTLLQVAAEGGNEVVVRTLLDIAGTEELDAVSGDKDKRTALHSAAAGGYTDAARMLELAGAKGGHLQ------------------LAGDFVIAGADLEAKDGDGNTPLHFAAAHDSDTFIGTLRRGVCVLVVSNKGEHPLHIAVDHDDMTVRKALLKAGTDPNVRYGSDKIFSPLNLARGN--AAMTRTLLGSGADVKSVCELGHASLHWAAGHGVLEVVDALVEGRAKVEARSLGVVLSEQDHGFQGLAPLHVAAYWEKLGT--LLALLQDGTNANTPDTDGRGPLHL 349          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.410e-38
Identity = 156/512 (30.47%), Postives = 205/512 (40.04%), Query Frame = 1
Query:   37 GTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAP--ATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLK-----------RLLRSAPADRAWRRRGPLVLSRVRAEREE--EDSRVVGGKVLRQGAECAGGDASGG-----------RDVGGG----------VLARVVGLEAEEVFRAIVGFV 1464
            G E ++FK+V+  ATP QWA WLRAPLEHA A GN +L   LL+AG DG AGW+GC GRSLLDAA  GGN+  +S  L+AG   DVN V  S  RS L++++ G H A AR L+LAGA V+ +D                                                                                           GAD   R   S   S L  A       + +ALL+HG DV   +   +  LHWAA       I  L+ AGAD++ + S +          G T LH AA     N   +  LL+RGA+V+     G T LH+V+     A D +   +                       V  R  SA P+             LL  APADR WRRR  L++ R R  +E      R   GK +  G     GD   G           R  GGG          +++ +V LE++ VFR I+G++
Sbjct:   10 GEEVEIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAA-----------GADTDIRDLDS--HSALVFAAQYERIDVMKALLEHGVDVNVGEDH-WNPLHWAAQFNSTGCITVLLDAGADIDVKCSFL---------DGRTSLHFAA--ETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKERTIHGGRRRKGKKVGNGEGLLLGDGKRGGSNNVRRSGRSRGRGGGRAAVEVDLRGLVSVLVCLESDGVFRTILGYI 496          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.650e-36
Identity = 238/517 (46.03%), Postives = 296/517 (57.25%), Query Frame = 1
Query:   13 DERTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARY--GSSLKFSPLQLACSSREAAMTRALL-KHGADVKSCDGFGFTALHWAA-----YRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVV-VTRSNSAEP---------LKRLLRSAPADRAWRRRGPLVLSRVRAER---------EEEDSRVVGG--KVLRQGAECAGGDASGGRDVG----GGVLARVVGLEAEEVFRAIVGFV 1464
            +E  + L G E ++FKL+ R ATP QW EWLRAPLEHA AEGN  L + L+ AGA+  AGW+GC GR+LL AA  G + K +   L AG+  DVN + G +  S LH A A G     R LM+AGA  ++ D      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+   R    +  + SPL++A     A + +ALL K  ++V + +  G+ ALH+ A      R K   +  L+GAGAD+  +       G  DS    TPLH+A     ++T  +  LL+ GA++NA      TPLHI      T    + ++                     VV V   N  +          + R+L  APADR+WRRRG LVLSR    R             SR+ G   KV R   + +  D     D        ++ R+VGLEAE +FR +VGF+
Sbjct:    8 EEDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVNVLFGGESESALHVAAARGADDTCRALMIAGADPNVRDRVGRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANCGLRSMCTNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVK-------GTNDSCA--TPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIA----CTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.290e-36
Identity = 158/551 (28.68%), Postives = 221/551 (40.11%), Query Frame = 1
Query:   19 RTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLD--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARY--GSSLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPA-------------------------TDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLKR---LLRSAPADRAWRRRGPLVLSRVRAEREE---------EDSRVVGGKVLRQGAECAG-------------GDASG------GRD--------VG-GGVLARVVGLEAEEVFRAIVGFV 1464
            + A L G E ++FKL+   ATP QWAEWLRAPLEHA A GN  L   LL AGA+GGAGW+GC GR++LDAA  GGN   V+  L +G   DVN V+ S RRS LH A   GH A A+ L++AGA V+ +D                                                                                             GAD + R+  G+ L  + + +A S     +  A++++G +V++ D +G TALH A  RG   V + L+ AGAD+ A++             G TPL +      ++   +  LL+RG +VN  +  G + LH+   + +                         T S    +                            +  + ++R   LL  APADR WRRR  LV+ R RAER           + +    G+ L +  E  G             G+ SG      GRD         G GG++  +VGLE+EEVFR IV F+
Sbjct:    6 KRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA--RGAQAV-DVLLDAGADVNAKACPAL--------HGFTPLSVCVM--DNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAPSSGSGSDRTEAATGRNLPRHEEADGDNSKVGKTDAGAVGEGSGPTDGERGRDGRATRGAAAGEGGLVPALVGLESEEVFRTIVCFL 543          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.170e-34
Identity = 238/513 (46.39%), Postives = 288/513 (56.14%), Query Frame = 1
Query:   37 GTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGSSLKFSPLQLACSSREAAMTRALLKHGAD-VKSCDGFGFTALHWAAY-----RGKPCVIEALVGAGADLEARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSN----------SAEPLKRLLRSAPADRAWRRRGPLVLSR-----VRAEREEEDSRVVGGKVLRQG-----AECAGGDASGGR---------DVGGGVLARVVGLEAEEVFRAIVGFV*R 1470
            G E ++FKLV R AT  QW EWLRAPLEHA A GN  L + L+ AGA   AGW+GCDGR+LL AA    N K +   L AG+  DVN + G+ R S LH A A G    ++ LM+AGA  +L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           + +A L      V + D +G+TALH AA      R K   +  L+ AGAD+ A+++        D H+   PLHIA   R  +T  +  LL+ GADVN  D   RTPLH       T SS A ++                     ++ T  +            + + ++L  APADR+WRRR  LVLSR     V+   E      VG      G     A  +G D+ GG          D+ G ++ R+VGLEA+ +FR +VGF+ R
Sbjct:   18 GFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVNVLFGAKRESALHLAAARGAEEASKALMIAGANPNLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXTIVKAFLDTDTSLVNATDHYGYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTT--------DDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEA----CTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNGNSTKLARFSGEDSGGGERETEDQMMVDLRG-LVTRLVGLEADGLFRLVVGFLKR 515          
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.220e-33
Identity = 198/411 (48.18%), Postives = 250/411 (60.83%), Query Frame = 1
Query:  250 KTVSXXLEAGSLGDVNAVTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADPSARYGS---SLKFSPLQLACSSREAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLEARSSQVWLPGHRDSHV--GLTPLHIAAFFRRSNTPRMALLLQRG-ADVNAADGHGRTPLHIVAAAPATDSSAADIDFXXXXXXXXXXXXXXXXXXXXVVVTRSNSAEPLKRLLRSAPADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQGAECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV 1464
            + +   L+   +G+V+AV+G + R+ LH A AGGH    RVLM AGA V L+D+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               GA P+  + +   +++FSPL LA   R AAMT AL+  GADV S D  G++ALHWA   G+  V++AL+  GAD+EAR+S++        H   G+TPLH AA+  + N P M +LLQ+G A+ NA D HG +PLHI+   P   S+AA  D                     ++ +       L++LL +APADRAWRRRG LV+ R +  + E ++                 DA         VL R+V L+ E +FR IV F+
Sbjct:    4 EVIRTVLDIEGVGEVDAVSGHEGRTALHYAAAGGHADAGRVLMFAGAKVDLVDADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKMEHVGVAKALLKAGAGPNVLFTTGDPTVRFSPLYLA--RRNAAMTSALVGMGADVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAY--QGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVMLRAQGVQAENEATT---------------DA---------VLPRLVDLQNEALFRHIVRFL 386          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig96.18622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH19_ECTSI5.510e-23497.95Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LKW6_ECTSI5.810e-6753.86Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LDP2_ECTSI4.330e-6362.15Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FYG4_ECTSI2.090e-4752.30Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JQI2_9PHAE3.510e-4337.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI5.410e-3830.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQN0_ECTSI3.650e-3646.03Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5K1F4_9PHAE4.290e-3628.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI1.170e-3446.39MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D8LCR2_ECTSI1.220e-3348.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig96contigEcto-sp6_S_contig96:217070..219239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score676.4
Seed ortholog evalue1e-191
Seed eggNOG ortholog2880.D8LH19
Model size2170
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-06_010900.1
Cds size1467
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350588.3000762-CDS-Ecto-sp6_S_contig96:217069..2185361682350588.3000762-CDS-Ecto-sp6_S_contig96:217069..218536Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig96 217070..218536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350588.321355-UTR-Ecto-sp6_S_contig96:218536..2192391682350588.321355-UTR-Ecto-sp6_S_contig96:218536..219239Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig96 218537..219239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig96.18622.1prot_Ecto-sp6_S_contig96.18622.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig96 217070..218536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig96.18622.1

>prot_Ecto-sp6_S_contig96.18622.1 ID=prot_Ecto-sp6_S_contig96.18622.1|Name=mRNA_Ecto-sp6_S_contig96.18622.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=489bp
MANFDERTAALGGTEEQLFKLVTRHATPAQWAEWLRAPLEHAVAEGNQHL
ASTLLRAGADGGAGWKGCDGRSLLDAAVQGGNSKTVSALLEAGSLGDVNA
VTGSDRRSPLHRAIAGGHTAVARVLMLAGAGVSLLDSENRSALHYALRGG
HRVLAGDVMIAGADVNAKDSCGETPLHIAAAAGDGHSVGTLLRRGGCVGA
ADGQGRCPLHAAVRAGHTVAAEALLKAGADPSARYGSSLKFSPLQLACSS
REAAMTRALLKHGADVKSCDGFGFTALHWAAYRGKPCVIEALVGAGADLE
ARSSQVWLPGHRDSHVGLTPLHIAAFFRRSNTPRMALLLQRGADVNAADG
HGRTPLHIVAAAPATDSSAADIDFLLRRGADETAEDNFGRTPEQVVVTRS
NSAEPLKRLLRSAPADRAWRRRGPLVLSRVRAEREEEDSRVVGGKVLRQG
AECAGGDASGGRDVGGGVLARVVGLEAEEVFRAIVGFV*
back to top

mRNA from alignment at Ecto-sp6_S_contig96:217070..219239+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig96.18622.1 ID=mRNA_Ecto-sp6_S_contig96.18622.1|Name=mRNA_Ecto-sp6_S_contig96.18622.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2170bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:217070..219239+ (Ectocarpus species6 EcLAC_371)
ATGGCAAATTTCGACGAGCGTACGGCAGCCCTGGGCGGCACGGAGGAGCA GCTGTTCAAGCTGGTCACCAGACACGCGACGCCCGCGCAATGGGCGGAGT GGCTGCGAGCCCCCCTGGAGCACGCCGTCGCGGAGGGCAACCAGCACCTC GCCTCCACGCTCCTCAGAGCCGGCGCTGACGGGGGCGCGGGCTGGAAGGG CTGCGACGGCCGCAGCCTGCTGGACGCGGCCGTCCAGGGTGGCAACAGCA AGACCGTGTCGGCCTTGCTAGAGGCCGGGAGCCTCGGCGATGTCAACGCG GTGACGGGGAGTGACCGGCGGTCGCCTCTGCACCGAGCGATCGCGGGCGG CCACACGGCCGTGGCGCGAGTGCTCATGCTCGCGGGCGCGGGCGTCTCGC TGCTCGACTCCGAAAACCGCAGCGCCCTGCACTATGCCCTCCGGGGGGGG CACCGCGTGCTGGCCGGGGACGTGATGATCGCCGGAGCCGACGTTAACGC GAAGGACAGCTGCGGCGAAACTCCTCTTCACATCGCGGCCGCCGCAGGCG ACGGCCACTCCGTCGGCACGCTCTTGCGCCGGGGGGGCTGCGTGGGCGCA GCGGACGGCCAGGGGCGGTGCCCGCTCCATGCGGCGGTGAGAGCGGGCCA TACAGTAGCCGCGGAGGCCCTGCTCAAGGCCGGGGCTGATCCCAGCGCCC GGTACGGGTCTAGCCTCAAGTTCTCGCCCCTTCAGCTGGCGTGCAGCAGC AGAGAGGCGGCGATGACGCGGGCGCTCCTGAAGCACGGTGCCGACGTTAA GAGTTGCGACGGGTTCGGGTTCACCGCGCTCCACTGGGCGGCCTACCGCG GCAAGCCGTGCGTGATCGAGGCGCTCGTGGGAGCCGGCGCTGACCTCGAA GCTCGGAGCTCTCAGGTCTGGCTGCCGGGACACCGGGACTCTCACGTGGG CCTGACGCCGCTGCACATCGCCGCCTTCTTCCGGCGCAGCAACACCCCGA GAATGGCGCTGCTGTTACAGAGGGGGGCGGACGTCAACGCAGCCGATGGC CACGGCCGGACCCCTCTCCACATCGTCGCCGCGGCTCCGGCGACGGACAG CTCGGCCGCGGATATCGACTTCCTTCTCAGGCGCGGCGCCGATGAAACCG CTGAGGATAACTTCGGGCGCACCCCTGAGCAGGTAGTAGTCACCCGCAGC AATTCCGCGGAGCCCCTGAAGCGGTTGTTAAGGAGCGCTCCCGCGGACAG AGCCTGGCGACGGAGAGGCCCGCTGGTCTTGAGCCGTGTCCGAGCGGAGA GGGAAGAAGAGGACAGCCGAGTAGTGGGTGGAAAGGTTCTGCGCCAAGGG GCGGAGTGCGCAGGGGGCGACGCCTCTGGTGGTCGGGATGTGGGCGGCGG GGTATTGGCGAGAGTGGTGGGGCTGGAAGCTGAAGAAGTTTTCCGAGCGA TTGTGGGATTCGTGTAGAGGTACATTATATTTTCCTTCTGCCGCCGCCCC CCCCCCTTGTTTCGTTCTGCACAAGCGAGGAGACCGATCGATGTTGTGTG TACTAATGCTTGGCGGCAGCGGCCGTTCGCTTGTTGTATGTTGAATGATG CGTCTTCGTGCTGTAAAACTGGGTTCTTTGCCCTCCAAACCTTCTTAGTT CATACTTTTGCCGTTCCCGGTGTTTAATTTCCCCCTGAGTTCATGTGGTG GGTGAAGGTTCGCGGCTAGTCGATGTACCTTCCTCCGTGCTGTATTTCCC ACGTATGTATGTGTGTTGGGTCTTTTTAGGGTTGGGATATCCAGGACTAC ACGAGTGTCGGGCACGCATAGTGTGCAGTGCGACATGACGTGAAGAATGA TCCGGGGTCGTGTTGCTCATAAATCGCATCTAAAGTCTTACATGTATGTA CTCACAACGTTCACGCCGCCCCTGTGAGAGTATTTTTTTGTGTCCGGCAG TGGATTGTCACCACCGCTTGGCCGTTTCGTTTCGTTTTGTCGCACCTCGC GAAGGGTATCATGTGTAGAGTTGTACGCGAAGTCACATGCTGGTCTTCGT TCACCCACGGGGGTCGTAGTCAAAGTAGTCATGAATTTTCGGCGCTTGCG TCTGTATGTAGTGTATATTTTCGTTGCATGTTGTGAGCAGCTATTCCTTG TACATAGTAGCGGCTTTCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig96:217070..219239+

>mRNA_Ecto-sp6_S_contig96.18622.1 ID=mRNA_Ecto-sp6_S_contig96.18622.1|Name=mRNA_Ecto-sp6_S_contig96.18622.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1467bp|location=Sequence derived from alignment at Ecto-sp6_S_contig96:217070..219239+ (Ectocarpus species6 EcLAC_371)
ATGGCAAATTTCGACGAGCGTACGGCAGCCCTGGGCGGCACGGAGGAGCA
GCTGTTCAAGCTGGTCACCAGACACGCGACGCCCGCGCAATGGGCGGAGT
GGCTGCGAGCCCCCCTGGAGCACGCCGTCGCGGAGGGCAACCAGCACCTC
GCCTCCACGCTCCTCAGAGCCGGCGCTGACGGGGGCGCGGGCTGGAAGGG
CTGCGACGGCCGCAGCCTGCTGGACGCGGCCGTCCAGGGTGGCAACAGCA
AGACCGTGTCGGCCTTGCTAGAGGCCGGGAGCCTCGGCGATGTCAACGCG
GTGACGGGGAGTGACCGGCGGTCGCCTCTGCACCGAGCGATCGCGGGCGG
CCACACGGCCGTGGCGCGAGTGCTCATGCTCGCGGGCGCGGGCGTCTCGC
TGCTCGACTCCGAAAACCGCAGCGCCCTGCACTATGCCCTCCGGGGGGGG
CACCGCGTGCTGGCCGGGGACGTGATGATCGCCGGAGCCGACGTTAACGC
GAAGGACAGCTGCGGCGAAACTCCTCTTCACATCGCGGCCGCCGCAGGCG
ACGGCCACTCCGTCGGCACGCTCTTGCGCCGGGGGGGCTGCGTGGGCGCA
GCGGACGGCCAGGGGCGGTGCCCGCTCCATGCGGCGGTGAGAGCGGGCCA
TACAGTAGCCGCGGAGGCCCTGCTCAAGGCCGGGGCTGATCCCAGCGCCC
GGTACGGGTCTAGCCTCAAGTTCTCGCCCCTTCAGCTGGCGTGCAGCAGC
AGAGAGGCGGCGATGACGCGGGCGCTCCTGAAGCACGGTGCCGACGTTAA
GAGTTGCGACGGGTTCGGGTTCACCGCGCTCCACTGGGCGGCCTACCGCG
GCAAGCCGTGCGTGATCGAGGCGCTCGTGGGAGCCGGCGCTGACCTCGAA
GCTCGGAGCTCTCAGGTCTGGCTGCCGGGACACCGGGACTCTCACGTGGG
CCTGACGCCGCTGCACATCGCCGCCTTCTTCCGGCGCAGCAACACCCCGA
GAATGGCGCTGCTGTTACAGAGGGGGGCGGACGTCAACGCAGCCGATGGC
CACGGCCGGACCCCTCTCCACATCGTCGCCGCGGCTCCGGCGACGGACAG
CTCGGCCGCGGATATCGACTTCCTTCTCAGGCGCGGCGCCGATGAAACCG
CTGAGGATAACTTCGGGCGCACCCCTGAGCAGGTAGTAGTCACCCGCAGC
AATTCCGCGGAGCCCCTGAAGCGGTTGTTAAGGAGCGCTCCCGCGGACAG
AGCCTGGCGACGGAGAGGCCCGCTGGTCTTGAGCCGTGTCCGAGCGGAGA
GGGAAGAAGAGGACAGCCGAGTAGTGGGTGGAAAGGTTCTGCGCCAAGGG
GCGGAGTGCGCAGGGGGCGACGCCTCTGGTGGTCGGGATGTGGGCGGCGG
GGTATTGGCGAGAGTGGTGGGGCTGGAAGCTGAAGAAGTTTTCCGAGCGA
TTGTGGGATTCGTGTAG
back to top