mRNA_Ecto-sp6_S_contig94.18558.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI) HSP 1 Score: 694 bits (1792), Expect = 1.060e-246 Identity = 351/360 (97.50%), Postives = 354/360 (98.33%), Query Frame = 1
Query: 1 SKISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVPDGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMLVREGGRLTGVGKVTFDNAADTGCGTVYYEEGDVCYS 1080
SKISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITC+SFTTMSMSANSLTV PDGQSGSVGLNEVRFEVTDGAKL WYPGASFTGTEYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFA+YQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGS LFAGEVTMQDVSIID+EGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIM V EGGRLTGVGKVTFDNAADTGCGTVYYEEGDVCYS
Sbjct: 5 SKISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQSGSVGLNEVRFEVTDGAKLLWYPGASFTGTEYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMFVMEGGRLTGVGKVTFDNAADTGCGTVYYEEGDVCYS 364
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 670 bits (1729), Expect = 1.960e-233 Identity = 339/363 (93.39%), Postives = 353/363 (97.25%), Query Frame = 1
Query: 4 KISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVPDGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCV----YVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMLVREGGRLTGVGKVTFDNAADTGCGTVYYEEGDVCYS 1080
KISAAALLLVSGSVC+GQ+ETCQDLLDAFALTASQDVVVEIQPGQDITC++FTTMSMSANSLTVT DGQSGSVGLNEVRFEVTDGAKLFW+PGASFT T+YQDVNGGAVYVGEGS+ARFYDTLTTSEVGVRSVPEEGSDFA+Y+LIGGCV YVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGS LFAGEVTMQDVSIID+EGNNGGGIYNLGKVNIKGNA+FQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDG GGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDG +YPEPI+LVREGGRLTGVGKVTFDNAA+TGCGTVYYEEGDVCYS
Sbjct: 236 KISAAALLLVSGSVCRGQVETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTATDGQSGSVGLNEVRFEVTDGAKLFWHPGASFTETDYQDVNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGYEYPEPIILVREGGRLTGVGKVTFDNAAETGCGTVYYEEGDVCYS 598
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 292 bits (748), Expect = 1.800e-88 Identity = 167/342 (48.83%), Postives = 219/342 (64.04%), Query Frame = 1
Query: 7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVP---DGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQD--VNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMLVREGGRLTGVGKVTF 1017
+S+ ALLL+ G+ C G +ETC DLL AF T ++DVVVE+ P DI C +FT M+M++NSLTV+ D SGS L VR +VT+GAKLFW F G E D V+GGAVYVGEGS+ RF + + ++ + + +E SDF+++ GGCV+ GYFRV+G A+F GC+ SG GES PGPGG +YVGETGS LF G VT+ D I D+ G +GGGIYNLGKVNIKG++ F+++ A +G AI+NG GA F F+ GA A F D + D G A+FN G+FK SGPA + P V + T +SE S F + P + V +G T VTF
Sbjct: 87 LSSLALLLIPGA-CHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFDAELPVIVAVDNSETIISEDSAF-WTWDESPGDALSVNDGADFTLPDSVTF 426
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.210e-75 Identity = 154/339 (45.43%), Postives = 200/339 (59.00%), Query Frame = 1
Query: 7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVPDGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQD--VNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIMLVREGGRLTGVGKVTF 1017
+S+ ALLL+ G+ C G +ETC DLL AF T ++DVVVE+ P DI C++FT M+M++N+LT LFW F G E + V+GGAVYVGEGS+ RF + + +V + + +E SDFA++ GGCV+ GYFRV+G A+F GC+ G GES PGPGG +YVGETGS LF VT+ + SI D+ G GGGIYNLGKVNIKG++ F+ + A AG AI+NG GA F F+ GA A F D + D G A+ N G+FK SGPA + P V + T LSE S F + P + V EG T VTF
Sbjct: 6 LSSLALLLMPGT-CHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLT-------------------------LFWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFDAELPVIVAMDNSETILSEDSAF-WTWDESPGDALTVNEGADFTLPDSVTF 317
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI) HSP 1 Score: 246 bits (627), Expect = 9.310e-72 Identity = 144/327 (44.04%), Postives = 199/327 (60.86%), Query Frame = 1
Query: 7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVP---DGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQD--VNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVFNGDGSDYPEPIML 972
+S +LL + G V G +ETC+DL AF LT +QDV+ EI P QDI C +FT M+M++N+LT+ D GS L VR VT+GA+L W +F G E + V+GGAV+VGEGS+ F + L ++ + + +E SDFA++ GGCV+ G F V+G A+F C+ +G GES PGPGG +YVG TGS F V + + I D+ G GGGIYNLG+V I G++ F+++ A +G AI+NG GAEF F A+A F D + D +G + N GYF+ SGPA VE AP V + T LSE S F ++ E + +
Sbjct: 6 VSPFSLLFLVG-VAHGLIETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEADAPVIVATETSQTILSENSAFWTFDEEFGEALSV 331
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI) HSP 1 Score: 242 bits (617), Expect = 2.760e-70 Identity = 147/345 (42.61%), Postives = 200/345 (57.97%), Query Frame = 1
Query: 1 SKISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCNSFTTMSMSANSLTVTVPDG---QSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEY--QDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAPTFVVGSSGYTRLSEGSVF-NGDGSDYPEPIMLVREGGRLTGVGKVTF 1017
+K+ ++ LLV V +G +ETC+DL AF LT +QDVV EI DI C FT M+M++N+LT+ + SGS L VR EVT+GAKL W F G E +VNGG V+VGEGS+ RF + + +V + + + SD A + GGCV+ G+FRV+G A+F C G GES PG GG ++V TGS LF V + D I ++ G +GGGI+NLGKVNIKG++ F+ L A +G AIFNG A F F+ GA+A F D + D G A+ N G+FK SGP V+ AP V T +S S F + D + V + ++ G V+F
Sbjct: 3 TKLFSSLALLVIPGVARGLIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLTLNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFFLGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVDAEAPVIVATEGSTTIISRDSAFWMFENDDVTGEAISVADSAEVSIPGSVSF 347
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI) HSP 1 Score: 161 bits (407), Expect = 3.050e-42 Identity = 82/165 (49.70%), Postives = 112/165 (67.88%), Query Frame = 1
Query: 385 EVGVRSVPEEGSDFATYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSALFAGEVTMQDVSIIDNEGNNGGGIYNLGKVNIKGNAVFQNLRAEAGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVECRAP 879
+VG+ + +E SD+A+YQ GGCV G F V G A+F GCE+ G GES+PGPGG ++V ETGS F+ VT+ + SI D+ G GGGIYNLG+VN+ G + F+++ A +G A++NG GA+ RF GATA F D + D +G A++ GYF+ SGPA VE P
Sbjct: 3 DVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALFVEADTP 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18558.1 >prot_Ecto-sp6_S_contig94.18558.1 ID=prot_Ecto-sp6_S_contig94.18558.1|Name=mRNA_Ecto-sp6_S_contig94.18558.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=306bp MSMSANSLTVTVPDGQSGSVGLNEVRFEVTDGAKLFWYPGASFTGTEYQDback to top mRNA from alignment at Ecto-sp6_S_contig94:695551..700033- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18558.1 ID=mRNA_Ecto-sp6_S_contig94.18558.1|Name=mRNA_Ecto-sp6_S_contig94.18558.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4483bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:695551..700033- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:695551..700033- >mRNA_Ecto-sp6_S_contig94.18558.1 ID=mRNA_Ecto-sp6_S_contig94.18558.1|Name=mRNA_Ecto-sp6_S_contig94.18558.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:695551..700033- (Ectocarpus species6 EcLAC_371)back to top |