mRNA_Ecto-sp6_S_contig94.18543.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18543.1
Unique NamemRNA_Ecto-sp6_S_contig94.18543.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: D7G2X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X3_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 5.940e-174
Identity = 255/269 (94.80%), Postives = 256/269 (95.17%), Query Frame = 1 
Query:  202 LETSTTSDEYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTIGVKL 1008
            LETSTTSDEYELLRGVSVKSASSG+EMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDK             GILVYTDVLEMLKTIGVKL
Sbjct:   13 LETSTTSDEYELLRGVSVKSASSGKEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDK-------------GILVYTDVLEMLKTIGVKL 268
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A835Z7Y9_9STRA (AhpC/TSA antioxidant enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y9_9STRA)

HSP 1 Score: 312 bits (800), Expect = 3.350e-98
Identity = 152/279 (54.48%), Postives = 205/279 (73.48%), Query Frame = 1 
Query:  169 VMVQSSSSSSSLETSTTSDEYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTIGVK 1005
            ++  +SSS+ S  T  +   +++L  V+V SA++G+ + L  AW+   GKKT+VAF TH ADFN+WEYAQKLRHYLP IDDAG  V+ V LGTV AA++F + T FPL  +++D TG+AY  LGFS GF+P +    K+NPYL+LLPMLAGIGSPGTIQAVL+GYVGD +++A WV S L +V+ + FD LGT+G+RP EVAT+RLQNMR+IVT+W+ L+PP+KELIT QGGT++F+G++ +Y Y D+             GIL YT V E+L+ +G K
Sbjct:   39 LLTVASSSTVSSRTGASETAFDVLSEVNVLSAATGQPLPLTQAWKAKKGKKTVVAFLTHFADFNAWEYAQKLRHYLPAIDDAGAEVIAVGLGTVAAAKEFASLTNFPLQRLYVDETGRAYEELGFSKGFQPPV----KVNPYLKLLPMLAGIGSPGTIQAVLRGYVGDRDADASWVESTLQLVEKRRFDVLGTQGARPFEVATVRLQNMREIVTRWDDLSPPNKELITWQGGTLIFDGKEVVYQYNDR-------------GILTYTPVDEVLREVGAK 300
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: W7TVS2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVS2_9STRA)

HSP 1 Score: 253 bits (646), Expect = 3.400e-75
Identity = 139/275 (50.55%), Postives = 176/275 (64.00%), Query Frame = 1 
Query:  193 SSSLETSTTSDEYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETG-FPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALS-----MVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTIG 999
            SSS     +S EY LL+  +V SA +G  + L   + P  GK TIVAF TH  DFNS+EYAQKL HYLP+++ A V VV V +GTV AA+ F +  G FPLD ++ D +  +Y   GFS GF   LP    +NPYL+LLPMLAGIGSPGT+QAVL GYVGD  ++A W    L      +VD   FD LG  G+RP EVAT+RLQNM  I+  W  L PP+K+LITQQGG++VFEGR  +  Y+D+             GIL YTDV ++L+T+G
Sbjct:   54 SSSFSIMQSSPEYALLKESNVLSAKTGRSVALGDVF-PTGGKMTIVAFLTHWGDFNSFEYAQKLLHYLPELERANVNVVAVGIGTVAAAQKFASLVGGFPLDRLYADESAASYGKFGFSRGFAADLP----VNPYLKLLPMLAGIGSPGTLQAVLAGYVGDKKADASWTGDYLKKEGQGLVDKSAFDVLGREGARPFEVATVRLQNMMAILPNWEALVPPNKQLITQQGGSLVFEGRKLVRVYRDR-------------GILTYTDVEDLLRTVG 310
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A383VHC5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VHC5_TETOB)

HSP 1 Score: 228 bits (581), Expect = 6.230e-66
Identity = 122/258 (47.29%), Postives = 164/258 (63.57%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRH-YLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTI 996
            EYE L+GV V SA+ G E++LLS W+P P  + ++ F TH AD +SWEYAQKL    LPQ+ + G+ V+ V LG+ + AR F +   FPL+ ++ D TG AYSALGFS GF P       INPY++LLPMLAGIGSPGT+Q V++GYVGD ++   + S+         FD LG    RP E+ATLRL NM  I+ KW +L+PPD +L+ QQGG++VF+G D I+ + D              GIL YTD+  ++  I
Sbjct:   36 EYEALKGVKVFSAADGFEVELLSLWQPGPDTRVVIPFLTHFADLSSWEYAQKLNQKVLPQLREQGLQVITVGLGSPENARLFSSTLDFPLEGLYADPTGAAYSALGFSPGFAP----GADINPYMKLLPMLAGIGSPGTLQEVIRGYVGDRSAKPVFNSAT-------PFDILGQNYQRPFELATLRLFNMIGILPKWGELSPPDTKLLVQQGGSLVFKGTDVIFRHNDS-------------GILKYTDIDALMAAI 269
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: D8TR67_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TR67_VOLCA)

HSP 1 Score: 221 bits (562), Expect = 2.940e-63
Identity = 121/257 (47.08%), Postives = 158/257 (61.48%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMF-MDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLK 990
            EYE LRG     ASSG+ ++LLS WEPAP  K +++F TH AD +SWE+AQKL   +P ++ +GV  + V LG+V  A++F     FPLD ++ M   G+ Y  LGFS GF P    D  +NPYL+L+PMLAG+GSPGT+Q VL+GYVGD         +A  + D+   FD LG    RP E+ATLRL NM  I+ KW++L P D  L+TQQGG VVF G   ++ + D              GIL YTDV E+LK
Sbjct:   36 EYEALRGKVAYKASSGDPVELLSLWEPAPTSKAVISFLTHFADLSSWEFAQKLVKVIPTLEGSGVRFLAVGLGSVGNAQEFARTLNFPLDRLYAMPEGGELYRQLGFSAGFAP----DLNVNPYLKLVPMLAGVGSPGTVQEVLRGYVGD--------KTAKPVFDSPTPFDVLGPGYQRPFELATLRLFNMMGILPKWSELCPADPSLLTQQGGCVVFAGEQVVFKHVDS-------------GILRYTDVDEILK 267
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A8J4CWY6_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CWY6_9CHLO)

HSP 1 Score: 219 bits (557), Expect = 1.620e-62
Identity = 119/256 (46.48%), Postives = 153/256 (59.77%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLK 990
            EYE LRG     ASSG+ ++LLS WEP P  K ++ F TH AD  SWE+AQKL  ++P ++ +GV V  V LG+V  A++F     FPLD ++       Y  LGFS GF P    D  +NPYL+LLPMLAGIGSPGT+Q V++GYVGD         +A  + D+   FD LG    RP E+ATLRL NM  I+ KWN+L PPD  L+TQQGG +VF G   ++ + D              GIL Y DV ++LK
Sbjct:   38 EYEALRGKVAYKASSGDPVELLSLWEPYPTSKAVIPFLTHFADLTSWEFAQKLVKHIPTLEGSGVRVFAVGLGSVSNAQEFARTLNFPLDRLYALPEPSLYRDLGFSAGFAP----DLDVNPYLKLLPMLAGIGSPGTVQEVIRGYVGD--------QAAKPVFDSPTPFDVLGPGYQRPFELATLRLFNMMGILPKWNELCPPDPRLLTQQGGCLVFSGEQVVFKHVDS-------------GILRYADVDDILK 268
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BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A1Y1I630_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I630_KLENI)

HSP 1 Score: 218 bits (554), Expect = 2.570e-61
Identity = 114/250 (45.60%), Postives = 152/250 (60.80%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDV 975
            +Y+ L+GV V  A+SG+ ++LLS W   PG + ++ F TH AD +SWE+AQKL   LP++   GV +V V LG+ D AR F    GFPL  ++ D TG  Y AL FS GF P    +  ++PYL+LLPML GIGSPGTIQ V +GY GD  S   +  S         FD LG    RP+E+ATLRL NM  I+ KW +++PP+  L+TQQGG++VF+G D ++ + D              GIL YTDV
Sbjct:  108 DYDALKGVQVLEAASGQPVELLSLWAAKPGVRVVIPFMTHFADLSSWEFAQKLAKKLPELQANGVRIVAVGLGSPDNARRFAETVGFPLQLLYADPTGACYRALNFSPGFAP----EAGVSPYLKLLPMLMGIGSPGTIQEVARGYFGDRGSKPVFEGST-------PFDILGKGYQRPMELATLRLFNMFGILQKWGEMSPPETRLLTQQGGSIVFDGEDVVFKHVDS-------------GILKYTDV 333
[Close]
BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A836BNE7_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNE7_9CHLO)

HSP 1 Score: 215 bits (548), Expect = 2.900e-61
Identity = 118/258 (45.74%), Postives = 160/258 (62.02%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQA-YSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKT 993
            EY+ LRG     ASSG+ ++LLS WEP PG K ++AF TH AD +SWE AQKL   +P ++ +GV V  V LG+V  A++F      P+D ++    G A Y ALGFS GF   LP    ++PYL+LLPMLAG+GSPGT+Q V++GYVGD         +A  + D+   FD LG    RP E+ATLRL NM  I+ KW++L+PPD+ L+TQQGG++VF G   ++ + D              GIL YTDV  +++T
Sbjct:   31 EYDTLRGAVAYKASSGDPVELLSLWEPVPGSKAVIAFLTHFADLSSWELAQKLVKVIPTLEASGVRVALVGLGSVQNAQEFARVLNVPMDRLYASPDGGALYRALGFSGGFGEDLP----VSPYLKLLPMLAGVGSPGTLQEVIRGYVGD--------QAAKPVFDSPTPFDILGAGYQRPFELATLRLFNMIGILPKWSELSPPDETLLTQQGGSLVFSGDAVLFKHVDS-------------GILRYTDVDTLMQT 263
[Close]
BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A699YK20_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YK20_HAELA)

HSP 1 Score: 216 bits (549), Expect = 6.820e-61
Identity = 113/258 (43.80%), Postives = 160/258 (62.02%), Query Frame = 1 
Query:  226 EYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKE-FDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTI 996
            EY+ LR ++V  A SGE ++LLS W+  PG K ++ F TH AD  SWEYAQKL   +P ++ +GV V+ V LG+   A++F  +  FP   +F D +G AY ALGF+ GF P    D  I+PY +LLPMLAG+GS GT+Q V++GY+GD         +A  + D    FD LGT   RP E+ATLRL NM  ++++WN L+PP++ L+TQQGGT+ F+G++ I+ + D              GIL YTD   +L+ +
Sbjct:   76 EYDQLRDLTVYRAGSGEPVELLSLWQARPGSKVVMPFLTHFADLTSWEYAQKLVKIMPMLEASGVQVIAVGLGSAANAQEFARDLRFPATKLFADPSGAAYKALGFNPGFLP----DLDISPYAKLLPMLAGVGSEGTLQEVVRGYIGD--------RAAQPVFDRATPFDILGTGYQRPFELATLRLFNMVGVLSRWNVLSPPNQALLTQQGGTLAFDGQEVIFKHVDS-------------GILKYTDTEALLRVV 308
[Close]
BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Match: A0A0G4GHR6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GHR6_9ALVE)

HSP 1 Score: 214 bits (546), Expect = 7.650e-61
Identity = 119/286 (41.61%), Postives = 168/286 (58.74%), Query Frame = 1 
Query:  172 MVQSSSSSSSLETSTTSDEYELLRGVSVKSASSGEEMDLLSAWEPAPGKKTIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFCAETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAGIGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEVATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRD-KIYNYKDKASLFFAFHCSRLDGILVYTDVLEMLKTIGVKL*SPAVT 1026
             + SS+ + + + S  +D   LL  VS+    +G E+ L S  +   G+KT+VAF TH  D +SWEYAQKL +  P++++  V ++ V +G+ +A   F    GFP+  +F D TG  Y  LGF++GF   + G   +NPY++L  ML GIGSPGTI AVLKGY G     ADW +  L +VD K FD LG R  RP EVAT+RLQNM  ++ +W  LAP D  LI QQGGT+ F+ +  +++ Y DK             GILVY ++  +L+ +G+   S  VT
Sbjct:   25 FMPSSTQTRAGDASRQTDAERLLGSVSLTDVETGREVSLCSRMK-GKGRKTVVAFLTHFGDLSSWEYAQKLSYLRPRLEEGKVDLLCVGIGSREAGLRFSELNGFPVSGLFCDETGSVYRELGFNSGFLGEMSG---VNPYVKLFFMLLGIGSPGTIPAVLKGYFGSKEQRADWATVCLRLVDGKRFDVLGERYQRPFEVATVRLQNMMAVLDRWQDLAPSDDNLIIQQGGTLAFDEKGAQLFRYDDK-------------GILVYAEMDALLQALGLPDTSTPVT 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X3_ECTSI5.940e-17494.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7Y9_9STRA3.350e-9854.48AhpC/TSA antioxidant enzyme-domain-containing prot... [more]
W7TVS2_9STRA3.400e-7550.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A383VHC5_TETOB6.230e-6647.29Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
D8TR67_VOLCA2.940e-6347.08Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4CWY6_9CHLO1.620e-6246.48Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A1Y1I630_KLENI2.570e-6145.60Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A836BNE7_9CHLO2.900e-6145.74Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A699YK20_HAELA6.820e-6143.80Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A0G4GHR6_9ALVE7.650e-6141.61Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:540674..547623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score506.9
Seed ortholog evalue7.1e-141
Seed eggNOG ortholog2880.D7G2X3
Model size1996
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.AhpC/TSA antioxidant enzyme
EggNOG OGs2CY4S@1,2S21S@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-09_004590.1
Cds size990
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18543.1prot_Ecto-sp6_S_contig94.18543.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 541659..547602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350579.0697021-UTR-Ecto-sp6_S_contig94:540673..5416581682350579.0697021-UTR-Ecto-sp6_S_contig94:540673..541658Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 540674..541658 -
1682350579.1605673-UTR-Ecto-sp6_S_contig94:547602..5476231682350579.1605673-UTR-Ecto-sp6_S_contig94:547602..547623Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 547603..547623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350579.0825033-CDS-Ecto-sp6_S_contig94:541658..5417181682350579.0825033-CDS-Ecto-sp6_S_contig94:541658..541718Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 541659..541718 -
1682350579.0923493-CDS-Ecto-sp6_S_contig94:542383..5426081682350579.0923493-CDS-Ecto-sp6_S_contig94:542383..542608Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 542384..542608 -
1682350579.1024597-CDS-Ecto-sp6_S_contig94:543208..5432861682350579.1024597-CDS-Ecto-sp6_S_contig94:543208..543286Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 543209..543286 -
1682350579.1117122-CDS-Ecto-sp6_S_contig94:543783..5438051682350579.1117122-CDS-Ecto-sp6_S_contig94:543783..543805Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 543784..543805 -
1682350579.1217747-CDS-Ecto-sp6_S_contig94:544720..5448391682350579.1217747-CDS-Ecto-sp6_S_contig94:544720..544839Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 544721..544839 -
1682350579.131724-CDS-Ecto-sp6_S_contig94:545433..5455751682350579.131724-CDS-Ecto-sp6_S_contig94:545433..545575Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 545434..545575 -
1682350579.141352-CDS-Ecto-sp6_S_contig94:546042..5461731682350579.141352-CDS-Ecto-sp6_S_contig94:546042..546173Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 546043..546173 -
1682350579.1511028-CDS-Ecto-sp6_S_contig94:547389..5476021682350579.1511028-CDS-Ecto-sp6_S_contig94:547389..547602Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 547390..547602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18543.1

>prot_Ecto-sp6_S_contig94.18543.1 ID=prot_Ecto-sp6_S_contig94.18543.1|Name=mRNA_Ecto-sp6_S_contig94.18543.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=330bp
MRCAGRVALSCGVVLCALVDPGASFVPGGQRAAVAGRGRQGEKRPRCDGV
MVQSSSSSSSLETSTTSDEYELLRGVSVKSASSGEEMDLLSAWEPAPGKK
TIVAFFTHTADFNSWEYAQKLRHYLPQIDDAGVGVVGVSLGTVDAARDFC
AETGFPLDNMFMDATGQAYSALGFSNGFEPRLPGDRKINPYLRLLPMLAG
IGSPGTIQAVLKGYVGDPNSNADWVSSALSMVDNKEFDFLGTRGSRPLEV
ATLRLQNMRQIVTKWNKLAPPDKELITQQGGTVVFEGRDKIYNYKDKASL
FFAFHCSRLDGILVYTDVLEMLKTIGVKL*
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mRNA from alignment at Ecto-sp6_S_contig94:540674..547623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18543.1 ID=mRNA_Ecto-sp6_S_contig94.18543.1|Name=mRNA_Ecto-sp6_S_contig94.18543.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6950bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:540674..547623- (Ectocarpus species6 EcLAC_371)
TGACGATCTGCCGAGATCAAGATGCGCTGTGCTGGGCGTGTTGCGTTGTC
GTGTGGAGTGGTCTTGTGTGCCCTGGTTGATCCAGGGGCCAGTTTCGTGC
CGGGGGGGCAACGAGCTGCAGTTGCTGGAAGGGGTCGGCAGGGGGAGAAG
CGTCCTCGGTGCGACGGCGTTATGGTACAGTCGAGCAGCAGCAGCAGCAG
CTTGGAGACCTCGACCACGTCTGATGAATATGAGGTGAGAAGAGGGGCGA
TGAGAGTCATCAGAGACACGGGTCCTGGTGTCCTTTGTCGAGTTTGTGTC
GTGTTTATGCATTGATCTACATATTTGAACTGCTCGTACCCCGCGGAAGG
CGCGCTGACTGCCTGCATGTGTAACAGCTGCGGATGATCATGTCAGGTTG
CCGTTCTGACGGTAGAGTTGGGTCGCGCAAGGAGTCCGTGTTTGGCCGAG
CTGAGTGTTGCTTGCAACGGTTGAAAGGAACATGTATATGGAGCTCCTGG
GTAGTATTTCTCCTTGATTTTCGCAGGCCCGGGACTCGGTGCTTTTGATC
CCCACACCTGTACTTTTTTAGAAGGCGATGTATGCACGTACAGCTGATAG
CGCCTAGACAAAAAGCGCATACATACAGCAGTAGCACCTCCAAGCAGCAC
CTCCTTCTTTTGGTATCCGAGAATCCGAGCATGTCCGACGTCTTGGCAGC
TTCCTATTACTGCAGAGAAATGGTGGGATGATCATGCGACAACAGTCTGT
GTTTATTGGTGGTTGTCTGTCTCCGAACTATGACCATTGCTGTTGCGGTC
TCTGTCCGCTTGTTATCATACATACGGTGGTGTAAAAAACATTGTTCCTG
CTACCAACGTACTTCTCGTAGAAAATTGTTGGTCAAGTTTGCGGACCTAT
GGTGATCACAGCGCTTGCCTCTCCTTGCTGTACTTATGTTTTGTGACACT
TAGTCCCCCCGGAACACCAATTTCTGTCGTTCACCTTCCGAATCCTTCGT
CCCTCAAGCGGTTCGAGTGCTACAGCCCTCCCTCTCTGCATGTTCAGGTC
TGCGAAAGCATTACTCCACCCCGGCTAGGTCGAAAAGCGTGGGTTTATTG
TCTTGAGTCGACCCACGCGCACTTCGAAGACCCCGCTCGCATTGGGGGCC
ATGATATTGTAGTGCTACAGCGTGCCAGTGAGTGAGACAACGTGTCGACA
TGATACAGGGTTCCTTCCACACGGTTCGGTGCATGGTTCTTTTGTTTGAA
CAACACTTGATGGTGTGAGGAGATGGCGACGTACTCGACGAGACAGTTTC
ATATTCGTACGGGAAATCCGGGGTTGAAGTGTTTCGGGTCCCGACAGTCT
GTTCCTTCTCTCTGTACGCCCCCCGCCTCCTCGACAACAAGGAAGACCCG
TGCTTCAAACAAACCTTGCCATGGAAAACAACGTGCTCGCCCTTTGGCAG
TTGCTGCGTGGAGTTTCCGTGAAGAGCGCGTCAAGCGGCGAGGAGATGGA
CCTCCTGAGCGCGTGGGAGCCGGCCCCGGGCAAGAAGACGATTGTGGCCT
TCTTTACCCACACGGCTGACTTCAACTCGTGGTGAGGCAGAGAGAGTGGG
GTATCCAACGAACTCGAGAGTGGTCCTGCAGTGAACCCTGATGAATATGG
TGTGAGCCAAGACAGCCCGGGGTCGACGCAGAGGAGCATGGAGACAGGGT
AGCACCATCTCACTGGCCCAATCCCCAATGTGCCAGCCTGTGTTTGAGTT
CGTCTGTTTGATAAACTGATGCGCCTTAGAAGATACCAAGGCGTGTCATT
GCAGCAGCTAGCATACTACGTTCGGGTGCTTACGTTTCCTTCCAACTAGC
AGAGTGCGTGCTCTGGTGCTGGGTCGCCTTATAGAAACCCAGGTGTAGAA
CGGTCCTCATGGTTCCTGTCGCCTCGCTCACATCGGAGACCAGGGCATTG
TGTTGTACCGATTTCTCCTGTTCATGAGAGAAGATTGTTCCTGTCTCAAG
GTCCCTTCTACGCCGGTATGCTCGTCGCCGTCTGTGTTCCTCTCATAGGG
AGTACGCGCAAAAGCTTCGGCATTACTTACCGCAGATTGACGATGCAGGC
GTCGGGGTAGTTGGAGTTAGCCTCGGCACCGTTGACGCTGCCAGGGACTT
TTGCGCCGAAACTGGTTTCCCCCTGGACAACATGTTCATGGTGAGCTGCA
CTCGAACGTGATCCGCATTACCTTTCATTGGCTGTACCGTATGAAGTTGC
GTAATGCGGTGACAACCCGTTGGGTCGGTGCTAGTTGTGTCACCTAACAC
ACAGGTTATGGACTATTCGTTTCCATGGCCATTTCAGTACCGTTTCAAGA
TGCCATAAGCGTGATTTGCGCACCAAGACGCCTTTCCTCTGAACAGATGA
TGTTATTCTTGAGGACTTGTCCGATTTTTTTCGACACGTTCGTTGTTGTC
TCTGAGACAAACTGTCATCAATTGATGTGCGCCACACGGCCGTGTTGTTT
CGCCCACGCGTTTCTGACTTAGCACATTCACATCGTTTTGGGAATTGATA
TATTGTGTACTCGTTGTGCAAACATTAGACCGCTTATCGGTTGAAAATGG
GGTATGCATATTACAACGGATGTACCGGTCTGTCCAATAACGTTGTTCGT
CTGGGCATGGTTGTTATCGCTGTTGTGCCAACCGCATCGAAGAACGAGTT
AAATGATCGTTGCAGTGCTGAGAGCCGTTAGGCCAAATGGGGAACGCAAA
CGAACGTGGTACGTACCAATTTGCGACTGTGCAGGATGCAACGGGACAAG
CCTACTCCGCGCTCGGCTTCTCGAACGGCTTCGAACCGCGATTGCCCGGA
GACAGGAAGATCAACCCTTACCTTCGACTACTTCCGATGCTTGCTGGCAT
CGGGTGAGCATGCAAAGCCTTTCTCAACATTCCGGACCTGTTAGGAAAGA
AATCGACAGATCGATATCGAGGAAGATGTGCTGGCTGTGTGTGTTCGTTC
AACACCTGCGTTCAAAGGAACTTCCCGCGATTGTGGGGGCACGGCACTCA
CAAACAAGCGTCATATCTTCCCCTTTGCCCCGTGAGGCACCCCTTGCCGT
ACCAGTATGGACAGGATTGTGCTCGAGTACAAGTACGTCTCTGGGCATGT
TGATGGAATTCGTCGTGCAGTTCTTGCGCTCATATATCGCTCCCCTGCCG
CATATGGTATTCTGGTCGATCAGCGATTATGGTTTCTATGCTTGGTCGAG
ATGACGCCGTGTGCATGGTGTGGGCGCACGGTGGCGGGGATGCCAACATT
TTACATGCCACCCGCTAGGCTCTGCATGCGCTCTTCGATATCAATCTGCT
CCAACCCAATTATTGTGCGCGCAGAAAATTTCATGACTCGAATCAATTCA
AGTGCCGGACTGTTCCTGTACTTGCTCTGAAGTGCGTTCGGCATGCCCTT
TTTATACCGGGGAAGTTGATCCCCACCTCGAGTCATTGTGCAAGAAGTTA
ACACTCATGATGCGCGGTATTTGATCATTCACCACGACATAGCAGCCACG
CCAGTGGGCACACCTGCGGAAGATATTTTCCCAATTATTTCCGACAGTGC
ATGGCTTAGTTCACCCGGGATGTCATGGCGAGAACTTTCCTCTCCCGACC
ACCCCGCGACTCGCGCAAATCGCGACTTGTCGATGCTATGAGCGTTTCTG
GGGCGATTCGCCAAGGCAATGATGCGTTTGGTGCTGTCCTTTCTTGATGT
TCTCATGGGTTTCGGCGTCCAACGTCAATCTCGCCGTGGAACCACAACCC
TCCCGGGCGTCTCTGCAGGTCGCCTGGCACTATCCAAGCGGTGAGTTCGG
GGCTGCTGCCGCCCCTGCCCTGTGCTAGTGTGGTGCTGGCCAATGTTTCC
ATAGTGATCCACACGAAGCCACGCAATGGCGAGAGCGCAGACTCAAGAGT
TGCAGTGATGTGTTTTTAAGCTCGGCAAATGTGCTGCGAGTTCCCACGAC
TCTATGCGTGCGTCCAAATGTTGTCGTGCAGGCTGTATCATTGTCGATGT
TGACCGCTATGACAAGGAGTTTTCGGGTACAATCTAACGAAACGGCAAGA
CTAATCATAACTGCACCGATGCACGTGCCCTGGTCAATGTATCACTGCGG
TAGATGCGCCCGCCTTTGTGTGCACATCGTGCCTCGGTATGTCAACAGTC
GCTGACTGGGGCGGCACGGGTCTGAAGGACTCCAAGCTCTCGCTGGTGCA
ACGCGGACCGCGACCCTAGACCATTCGACACGGAAAGAACGTTCAATAAC
CTAACGGGACACCTCCACGTTTGCGTGTCTATGTCAGGTTTTGAAGGGGT
ATGTAGGAGACCCCAACTCGAACGCGGACTGGGTTTCGAGCGCTTTGAGC
ATGGTCGACAACAAGGTATTCCAAACGGAGGACCAACACAGGACCGTACC
GCTCAATCGTTCTCACCCAGTCGGATGTACAAGTTTAGTTTACTTACGTC
CTGCCCGATTTGGGTAGTATACGCCCCAACCAAGTCCTCCGCATCGCAGA
GAATTAGGGGCTTGCGGTGAAAACTGCTATCAGCTGTCCTTCCGGCAGCG
ACTCGGCAGCACTTGCACGTATGCAGTTCTTTGCTCGCGCGGAAGCTTTG
CTTCGCAGTGAAAATCCCACCGCTCGTTGTGTCGTTCTACAATATATTCC
CTACGGTAGCACGTGCATTTTTGCTTTCGTGCAACCTGGACGCGCAGAAG
CAGAGGCCCGTGTGCGGTGTCTACGACATACCACGGTACCTCAGACATAA
CACCTTCTCATACGTTGTTAGCTGGATGTAGGGCTGTTTTGTCTCTTGGC
GAATGGCAGGGCTCTCTCGGAATCGCTTTGCTCCTGATTATGCACGCAAT
ATCGCGTCCCTCGCGTGCTGACTAGAGCGGAGGACTGACGTTCTTCCGGA
GGTAAGAAATTCCTTGTGGGTAGTTACACCCGTTTGTTCCTGTCCCCGTT
CGTCCTGCTCCTAAGGAGTTCGACTTCCTTGGGACGCGTGGTTCCAGACC
CCTTGAGGTCGCCACCTTACGGCTGCAGAACATGCGCCAGATCGTCACCA
AGTGGAATAAACTTGCCCCCCCGGACAAAGAGCTGATCACTCAACAAGGA
GGGACCGTCGTTTTCGAGGGCAGGGACAAGATCTACAATTACAAGGATAA
GGCAAGTCTGTTCTTTGCTTTTCATTGCTCTCGGCTCGACGTTCCCCACG
CACAGAAAATTCAATTTTGTTTATGGCACTTTTACCGACCCCTTGAACCA
TCAAGAGTGTTTGCAAACATCGATCGTGGCATGGTGCGGTGCAGACAGTG
AGTCGACGTTAAACGCCCGATACAGGTTACCATGCAACGCCCCCTGGTGC
CGTATGCATGCCTGGGGCGTGTTGCCTTCTCAAGACCATCACTGTCATAT
TTGTCTCAGGCCGGTATTCCTTCGTCTGTAGCCTTAAACATCGCAGTGTC
AATTTTCCACCCCCTGTTAAAGGCGTTCGATCTAATCGTCTTGATGGGCG
GGATCCTCTTCTTTCGAAGTCTGCATTCGGACCACCCCGTTTCTTGCCGC
ATCACGTTACAACAACCTATGTTTACTCGAGCCTTGACAATCGAGGACAC
GTCAAGTGTGTACAGCAAATTCATCTAAATTCGTGTAAACCGCCCCAAAT
GAAGTACCAACGATCTTCGGAACATTACGTGTTCATATCCTGTCCGTCAC
CACGGCGTATACGTCAACTGGTGCCCGCCATCCCCTTGTTCGCTCGTTCG
ATACGCCACTAATTTATGTAGCCGTGCCGTCCACGTTCCCCTTGCTTACC
TCACCAACCGATAGCTCACCATATCGTCGGTTACCCAACTGTGTGCGTCA
CACAGGGAATCCTTGTCTACACGGACGTCCTCGAAATGCTCAAGACAATC
GGTGTGAAACTGTAGAGTCCTGCGGTCACCGTTTTTATTGTGGCGGTAAC
TTGGTTGGAACCCCACCCACACTCAATCCCTGCCTACCTGGATGGGCCGT
GGACGGATCGCGTAGTGTTGTGGTTAGAGGTTGTGTGTTCCACATGTAAC
GCCCCGTGGTTGATGGTGCCGGAAGATCATCCTTGTGGCAGACCACACCA
ACTCTCTGCCACTGTGGTGCCACCGAGATCTTGCTGCGTGGGTGCGGAGC
GCCCTTCGTCGAGACTTGGGAGCGTTTCCATTCGAGGTGCACACCACTAC
CCGGGTTAGGCCTTCGATGAGGCCAAATGTTTGCCTCTCTTCCGTCTCAG
AACAGCAACGACGGATGTCTGTGCTGCTTGCTCTTGTCCGGAGATTGTTC
GTTCTGAGGACCTCGGGGGCTTACCAATCCACCTGAGTCTCGGCGGGGTA
TCTTCTGTATCGTCGTTTTGAGAGAACCGCTAATTTGTGGAACGCCGCAG
ATTCAGACGGTATTTAGATTATGGTTGGTCCAGTGCCGAATAATGATATG
AGGGAAAAAACATTAAACCCGTTGAAATTGGTAACATCGGGAGCACAAGC
AAAAGAAGCGCTCTGTCTTCCTACACGCAGAGACCCGTTTTGGAGTGGTT
GCTTCGGAAAGGGCAAGCCAATGTGGAACCGCCCGCAACGTGGCACGGGG
AGTTTCGATACGCAATTTGCTCGTGTGGGGTGAGACTTTGGACTCCGTCA
TGGATCCGGAATTTGCGTACAAGTGTCTTGAACCACTCGACGGCGCGCTT
CCAGGAGATGACCTTGTTGCGCTCTTTGAAAGGCCAGTGCTGTAGGACAC
GCGAATACAGAAGGGATTGGAACAACCATATGCGGAATAAGGAACCCAAC
CAACTTCGTCGATTCGGTTCTTCTCGCTGTCTGTTTGGAATCTACACGAG
GAAAACACGTCGTGCTCTTGGACCAGGTCCCTTACGTAGGTCGGATCCCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:540674..547623-

>mRNA_Ecto-sp6_S_contig94.18543.1 ID=mRNA_Ecto-sp6_S_contig94.18543.1|Name=mRNA_Ecto-sp6_S_contig94.18543.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:540674..547623- (Ectocarpus species6 EcLAC_371)
ATGCGCTGTGCTGGGCGTGTTGCGTTGTCGTGTGGAGTGGTCTTGTGTGC
CCTGGTTGATCCAGGGGCCAGTTTCGTGCCGGGGGGGCAACGAGCTGCAG
TTGCTGGAAGGGGTCGGCAGGGGGAGAAGCGTCCTCGGTGCGACGGCGTT
ATGGTACAGTCGAGCAGCAGCAGCAGCAGCTTGGAGACCTCGACCACGTC
TGATGAATATGAGTTGCTGCGTGGAGTTTCCGTGAAGAGCGCGTCAAGCG
GCGAGGAGATGGACCTCCTGAGCGCGTGGGAGCCGGCCCCGGGCAAGAAG
ACGATTGTGGCCTTCTTTACCCACACGGCTGACTTCAACTCGTGGGAGTA
CGCGCAAAAGCTTCGGCATTACTTACCGCAGATTGACGATGCAGGCGTCG
GGGTAGTTGGAGTTAGCCTCGGCACCGTTGACGCTGCCAGGGACTTTTGC
GCCGAAACTGGTTTCCCCCTGGACAACATGTTCATGGATGCAACGGGACA
AGCCTACTCCGCGCTCGGCTTCTCGAACGGCTTCGAACCGCGATTGCCCG
GAGACAGGAAGATCAACCCTTACCTTCGACTACTTCCGATGCTTGCTGGC
ATCGGGTCGCCTGGCACTATCCAAGCGGTTTTGAAGGGGTATGTAGGAGA
CCCCAACTCGAACGCGGACTGGGTTTCGAGCGCTTTGAGCATGGTCGACA
ACAAGGAGTTCGACTTCCTTGGGACGCGTGGTTCCAGACCCCTTGAGGTC
GCCACCTTACGGCTGCAGAACATGCGCCAGATCGTCACCAAGTGGAATAA
ACTTGCCCCCCCGGACAAAGAGCTGATCACTCAACAAGGAGGGACCGTCG
TTTTCGAGGGCAGGGACAAGATCTACAATTACAAGGATAAGGCAAGTCTG
TTCTTTGCTTTTCATTGCTCTCGGCTCGACGGAATCCTTGTCTACACGGA
CGTCCTCGAAATGCTCAAGACAATCGGTGTGAAACTGTAG
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