mRNA_Ecto-sp6_S_contig94.18542.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: D7G2X2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X2_ECTSI) HSP 1 Score: 474 bits (1221), Expect = 8.780e-167 Identity = 238/240 (99.17%), Postives = 238/240 (99.17%), Query Frame = 1
Query: 127 MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDSAPEQ 846
MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDS STAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPG RDSAPEQ
Sbjct: 1 MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDSHSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGTRDSAPEQ 240
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A835YYI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI6_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.220e-51 Identity = 98/217 (45.16%), Postives = 135/217 (62.21%), Query Frame = 1
Query: 181 APSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYA-KNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKR 828
APSH + + LA + +Q DT VS++ T G K V GLT+ F + E+ + A LS +L GI++++ K YLWTG I+++LY EDC FTDPTLSF GLST+K+NVGSL+ +++ V L SCEL +++ CV+ RWRM G ++LPW P +DV+GRT F+YD + GNR+ Y E WE+ A EALMQ+ PGKR
Sbjct: 14 APSHVH---SASLAAQTKQDSSDT------VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKA-----GKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 216
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A6S9RDB2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RDB2_CHRCT) HSP 1 Score: 168 bits (425), Expect = 7.470e-44 Identity = 94/222 (42.34%), Postives = 134/222 (60.36%), Query Frame = 1
Query: 175 SAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEA-LSADTSAKASLSEAELEAGIRQEY-AKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDS 834
S PS RS A+R+ E + T ++F+ TS V+ V LT L +G D A L AD+ + L+ +EL G+R +Y A+ YLWTGDI+ +LY+ DC FTDPTLSF GLST++RN+ +L+ +LD VR+ LYS +++ ++ WRM G++ LPW P ID+ G T F+YD +GNRI Y E W++ AA AL Q+ RPG R++
Sbjct: 277 SREPSRTSRS-AVRMHAESETSAEPERTGGTPAADFQGTSPFVQGVVSSLTALVNAVSGKTMDEPAALEADSELRPPLTPSELLEGVRDDYVARKYLWTGDIDPNLYDSDCVFTDPTLSFKGLSTFQRNIANLKPLLDALVRDPVVDLYSISSTVDETQIKATWRMKGEIALPWAPVIDLTGSTVFTYDPLKGNRITEYTESWDISAASALGQLLRPGAREA 497
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S4KR88_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KR88_GUITH) HSP 1 Score: 158 bits (400), Expect = 1.510e-42 Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 172 LSAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLF--VRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPG 822
L AA S R RS A + E+ D +S +E++SG K + LT+L V GG+ E+ + + LS +L+ GI +Y + YLWTG+I+ LY+E+C FTDPT+SF GL T+++N+ +L+ +D V++ LYSCEL++++ V RWRM G L LPW P ID+VG T+F +D RGNRI Y E WE A+ L+ + +PG
Sbjct: 46 LRAAGSMRRRSSAGLIVCSMEE-----DKPRREISTYEKSSGVTKFIISSLTELVNAVVGRGGEVPEESNTRE------LSLEQLKLGIEDDYRRCYLWTGEIDPSLYDENCKFTDPTISFEGLRTFQKNLANLRPFIDALVKDYDVDLYSCELKEKNQQVVARWRMRGQLALPWRPLIDLVGSTSFKFDPERGNRIVEYRESWETPASTVLLGLLKPG 253
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S1DMA4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA4_HEMAN) HSP 1 Score: 156 bits (394), Expect = 1.470e-41 Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 1
Query: 193 RYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSV-LYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRP 819
R R R L L +E DT T + + Q+S VKA V GLT+L ED L D + +SE EL GI+ +Y + YLWTG+I+ LY+ DC FTDPTLSF GL T++ N+ +L+ +D V++ SV +Y C+L + V+ WRMVG L++PW PTID+ G T F+Y S+GNRI Y EVWE ++ L+Q+ P
Sbjct: 67 RERKRVLELRAAEE----DT----TKTTSYGQSSTGVKAIVSGLTNLVNAVMQRGEDPSKL--DRPQRDDISEQELLEGIKGDYERRYLWTGEIDPYLYDYDCVFTDPTLSFKGLKTFQSNLANLRPFIDFLVQDDCSVEMYGCDLVLGEPQVKASWRMVGRLKVPWTPTIDLNGTTVFTYSPSKGNRIVDYQEVWETPPSKVLLQLLVP 266
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S0Z2E3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2E3_9CRYP) HSP 1 Score: 150 bits (378), Expect = 3.040e-39 Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 1
Query: 250 TDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSV-LYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRP 819
++ ++ + + Q+S VKA V GLT+L ED L+ + ++E EL GI+ +Y + YLWTGDI+ LY+ +C FTDPTLSF+GL T++ N+ +L+ +D V+ +V +Y C+L + V+ WRMVG L++PW PTID+ G T F+Y ++GNRI Y EVWE +E L+Q+ P
Sbjct: 75 SEKDTSKTTSYGQSSTGVKAIVSGLTNLVNAVMQRGEDPSKLNRPE--RDGITEQELLEGIKGDYERRYLWTGDIDPYLYDYECVFTDPTLSFTGLETFQSNLANLRPFIDFLVQEDCAVEMYGCDLVPGEPRVKASWRMVGRLKVPWTPTIDLNGTTVFTYAPNKGNRIVDYQEVWETPPSEVLLQLLVP 263
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A061RRB7_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRB7_9CHLO) HSP 1 Score: 148 bits (373), Expect = 1.690e-38 Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 274 SEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKN-YLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
S T+ VK+ V GLT +G + S + +A +S +L G+ +++ +N YLW+G I+ +LY DC FTDPTLSF GL T++RN+ +LQ +D VRN L +L ++ + V+ RWRM GD++LPWGP I++ GRT F Y+ +G R+ Y E W++ AEAL+Q+ RP +
Sbjct: 78 SSHNSTNFVVKSIVSGLTKAINWTSGSPPERVDYSTEEDTRAPVSPQQLLWGVEKDFTENGYLWSGAIDTNLYCRDCTFTDPTLSFKGLETFERNLRNLQPWIDRLVRNEVCELIDIQLLEDSNEVRARWRMKGDIQLPWGPQINLTGRTRFCYNPDKGGRVEEYFEEWDISGAEALLQLLRPAR 262
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: C1E2X3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2X3_MICCC) HSP 1 Score: 141 bits (356), Expect = 1.140e-35 Identity = 86/205 (41.95%), Postives = 115/205 (56.10%), Query Frame = 1
Query: 274 SEFEQTSGSVKAFVGGLTDLFVRFA--GGDEDSEA---------LSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDS------CVQTRWRMVGDLRLPWGPTIDVVGRTTFS---YDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
S +++TSG+VK V GLT + F GGD S + L A I +E+ + YLWTGDIN ++Y+ C FTDPTLSF+GL T++RN+ +LQ VL VR+S LYSCEL + V+ RWRM G+LR+PW P ID+ G+TTF+ Y RG I +Y E W + A EA+MQ+ P K
Sbjct: 92 SNYKETSGAVKGLVSGLTAVVNAFGVGGGDVASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVELYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 296
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: C1EIW1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EIW1_MICCC) HSP 1 Score: 136 bits (343), Expect = 1.460e-34 Identity = 86/207 (41.55%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 271 VSEFEQTSGSVKAFVGGLTDLFVRFA--GGDEDSEA---------LSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSR-SVLYSCELRQEDS------CVQTRWRMVGDLRLPWGPTIDVVGRTTFS---YDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
+S ++ TSG+VK V GLT + F GGD S + L A I +E+ + YLWTGDIN ++Y+ C FTDPTLSF+GL T++RN+ +LQ VL VR+S LYSCEL + V+ RWRM G+LR+PW P ID+ G+TTF+ Y RG I +Y E W + A EA+MQ+ P K
Sbjct: 19 LSNYKGTSGAVKGLVSGLTAVVNAFGVGGGDVASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVEQLYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 225
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A830HR29_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HR29_9CHLO) HSP 1 Score: 135 bits (340), Expect = 8.110e-34 Identity = 74/193 (38.34%), Postives = 118/193 (61.14%), Query Frame = 1
Query: 262 STAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYS-CELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDS 834
S ++++++ TS + V LT A GDE A D + +S ++ I +++ + NYLWTGDI+ D+Y++ C FTDPTLSF+G + ++RN+ L+ ++ V + RS L L + + RW+M+G+LRLPW P ++V GRT ++ D+S+G RI YDE WE++A+EALMQ+ P + S
Sbjct: 61 SVSLAQYDSTSPLTRFVVSALTTAIGGDAHGDEVGLAQKEDD-LRPPVSPQDVRNAIERDFCEGNYLWTGDISMDVYDKGCVFTDPTLSFTGTAAFQRNLERLEPWIEKLVVDPRSELRGPVVLDDSQAFCEARWQMIGELRLPWRPVVNVKGRTRYTLDTSKGGRIVRYDENWELKASEALMQLVTPTTKAS 252 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig94.18542.1 >prot_Ecto-sp6_S_contig94.18542.1 ID=prot_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=267bp MALTPLCSPTRLVGLALGVSSLAASFMNHRCCTSSAYWTGGLSAAPSHRYback to top mRNA from alignment at Ecto-sp6_S_contig94:536894..540751+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig94.18542.1 ID=mRNA_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3858bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:536894..540751+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:536894..540751+ >mRNA_Ecto-sp6_S_contig94.18542.1 ID=mRNA_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:536894..540751+ (Ectocarpus species6 EcLAC_371)back to top |