mRNA_Ecto-sp6_S_contig94.18542.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig94.18542.1
Unique NamemRNA_Ecto-sp6_S_contig94.18542.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: D7G2X2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X2_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 8.780e-167
Identity = 238/240 (99.17%), Postives = 238/240 (99.17%), Query Frame = 1
Query:  127 MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDSAPEQ 846
            MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDS STAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPG RDSAPEQ
Sbjct:    1 MNHRCCTSSAYWTGGLSAAPSHRYRSRALRLAPRQEQGEGDTDSHSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGTRDSAPEQ 240          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A835YYI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI6_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.220e-51
Identity = 98/217 (45.16%), Postives = 135/217 (62.21%), Query Frame = 1
Query:  181 APSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYA-KNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKR 828
            APSH +   +  LA + +Q   DT      VS++  T G  K  V GLT+ F   +   E+   + A       LS  +L  GI++++  K YLWTG I+++LY EDC FTDPTLSF GLST+K+NVGSL+ +++  V      L SCEL +++ CV+ RWRM G ++LPW P +DV+GRT F+YD + GNR+  Y E WE+ A EALMQ+  PGKR
Sbjct:   14 APSHVH---SASLAAQTKQDSSDT------VSDYAGTGGIAKGIVSGLTNAFNAISPAKEEEVVVKA-----GKLSPRQLFTGIKEDFVDKRYLWTGLIDDNLYSEDCLFTDPTLSFRGLSTWKKNVGSLRPLVNALVPEFGVDLLSCELNEKEKCVRARWRMWGYIKLPWQPAVDVIGRTRFTYDPAEGNRVVDYFETWELPAGEALMQLVTPGKR 216          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A6S9RDB2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9RDB2_CHRCT)

HSP 1 Score: 168 bits (425), Expect = 7.470e-44
Identity = 94/222 (42.34%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  175 SAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEA-LSADTSAKASLSEAELEAGIRQEY-AKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDS 834
            S  PS   RS A+R+    E       +  T  ++F+ TS  V+  V  LT L    +G   D  A L AD+  +  L+ +EL  G+R +Y A+ YLWTGDI+ +LY+ DC FTDPTLSF GLST++RN+ +L+ +LD  VR+    LYS     +++ ++  WRM G++ LPW P ID+ G T F+YD  +GNRI  Y E W++ AA AL Q+ RPG R++
Sbjct:  277 SREPSRTSRS-AVRMHAESETSAEPERTGGTPAADFQGTSPFVQGVVSSLTALVNAVSGKTMDEPAALEADSELRPPLTPSELLEGVRDDYVARKYLWTGDIDPNLYDSDCVFTDPTLSFKGLSTFQRNIANLKPLLDALVRDPVVDLYSISSTVDETQIKATWRMKGEIALPWAPVIDLTGSTVFTYDPLKGNRITEYTESWDISAASALGQLLRPGAREA 497          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S4KR88_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KR88_GUITH)

HSP 1 Score: 158 bits (400), Expect = 1.510e-42
Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = 1
Query:  172 LSAAPSHRYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLF--VRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPG 822
            L AA S R RS A  +    E+     D     +S +E++SG  K  +  LT+L   V   GG+   E+ + +      LS  +L+ GI  +Y + YLWTG+I+  LY+E+C FTDPT+SF GL T+++N+ +L+  +D  V++    LYSCEL++++  V  RWRM G L LPW P ID+VG T+F +D  RGNRI  Y E WE  A+  L+ + +PG
Sbjct:   46 LRAAGSMRRRSSAGLIVCSMEE-----DKPRREISTYEKSSGVTKFIISSLTELVNAVVGRGGEVPEESNTRE------LSLEQLKLGIEDDYRRCYLWTGEIDPSLYDENCKFTDPTISFEGLRTFQKNLANLRPFIDALVKDYDVDLYSCELKEKNQQVVARWRMRGQLALPWRPLIDLVGSTSFKFDPERGNRIVEYRESWETPASTVLLGLLKPG 253          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S1DMA4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMA4_HEMAN)

HSP 1 Score: 156 bits (394), Expect = 1.470e-41
Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 1
Query:  193 RYRSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSV-LYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRP 819
            R R R L L   +E    DT    T  + + Q+S  VKA V GLT+L        ED   L  D   +  +SE EL  GI+ +Y + YLWTG+I+  LY+ DC FTDPTLSF GL T++ N+ +L+  +D  V++  SV +Y C+L   +  V+  WRMVG L++PW PTID+ G T F+Y  S+GNRI  Y EVWE   ++ L+Q+  P
Sbjct:   67 RERKRVLELRAAEE----DT----TKTTSYGQSSTGVKAIVSGLTNLVNAVMQRGEDPSKL--DRPQRDDISEQELLEGIKGDYERRYLWTGEIDPYLYDYDCVFTDPTLSFKGLKTFQSNLANLRPFIDFLVQDDCSVEMYGCDLVLGEPQVKASWRMVGRLKVPWTPTIDLNGTTVFTYSPSKGNRIVDYQEVWETPPSKVLLQLLVP 266          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A7S0Z2E3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2E3_9CRYP)

HSP 1 Score: 150 bits (378), Expect = 3.040e-39
Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  250 TDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSV-LYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRP 819
            ++  ++  + + Q+S  VKA V GLT+L        ED   L+     +  ++E EL  GI+ +Y + YLWTGDI+  LY+ +C FTDPTLSF+GL T++ N+ +L+  +D  V+   +V +Y C+L   +  V+  WRMVG L++PW PTID+ G T F+Y  ++GNRI  Y EVWE   +E L+Q+  P
Sbjct:   75 SEKDTSKTTSYGQSSTGVKAIVSGLTNLVNAVMQRGEDPSKLNRPE--RDGITEQELLEGIKGDYERRYLWTGDIDPYLYDYECVFTDPTLSFTGLETFQSNLANLRPFIDFLVQEDCAVEMYGCDLVPGEPRVKASWRMVGRLKVPWTPTIDLNGTTVFTYAPNKGNRIVDYQEVWETPPSEVLLQLLVP 263          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A061RRB7_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RRB7_9CHLO)

HSP 1 Score: 148 bits (373), Expect = 1.690e-38
Identity = 75/185 (40.54%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  274 SEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAKN-YLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
            S    T+  VK+ V GLT      +G   +    S +   +A +S  +L  G+ +++ +N YLW+G I+ +LY  DC FTDPTLSF GL T++RN+ +LQ  +D  VRN    L   +L ++ + V+ RWRM GD++LPWGP I++ GRT F Y+  +G R+  Y E W++  AEAL+Q+ RP +
Sbjct:   78 SSHNSTNFVVKSIVSGLTKAINWTSGSPPERVDYSTEEDTRAPVSPQQLLWGVEKDFTENGYLWSGAIDTNLYCRDCTFTDPTLSFKGLETFERNLRNLQPWIDRLVRNEVCELIDIQLLEDSNEVRARWRMKGDIQLPWGPQINLTGRTRFCYNPDKGGRVEEYFEEWDISGAEALLQLLRPAR 262          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: C1E2X3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2X3_MICCC)

HSP 1 Score: 141 bits (356), Expect = 1.140e-35
Identity = 86/205 (41.95%), Postives = 115/205 (56.10%), Query Frame = 1
Query:  274 SEFEQTSGSVKAFVGGLTDLFVRFA--GGDEDSEA---------LSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDS------CVQTRWRMVGDLRLPWGPTIDVVGRTTFS---YDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
            S +++TSG+VK  V GLT +   F   GGD  S                      +   L A I +E+ +  YLWTGDIN ++Y+  C FTDPTLSF+GL T++RN+ +LQ VL   VR+S   LYSCEL  +         V+ RWRM G+LR+PW P ID+ G+TTF+   Y   RG  I +Y E W + A EA+MQ+  P K
Sbjct:   92 SNYKETSGAVKGLVSGLTAVVNAFGVGGGDVASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVELYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 296          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: C1EIW1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EIW1_MICCC)

HSP 1 Score: 136 bits (343), Expect = 1.460e-34
Identity = 86/207 (41.55%), Postives = 115/207 (55.56%), Query Frame = 1
Query:  271 VSEFEQTSGSVKAFVGGLTDLFVRFA--GGDEDSEA---------LSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSR-SVLYSCELRQEDS------CVQTRWRMVGDLRLPWGPTIDVVGRTTFS---YDSSRGNRIFSYDEVWEMEAAEALMQIFRPGK 825
            +S ++ TSG+VK  V GLT +   F   GGD  S                      +   L A I +E+ +  YLWTGDIN ++Y+  C FTDPTLSF+GL T++RN+ +LQ VL   VR+S    LYSCEL  +         V+ RWRM G+LR+PW P ID+ G+TTF+   Y   RG  I +Y E W + A EA+MQ+  P K
Sbjct:   19 LSNYKGTSGAVKGLVSGLTAVVNAFGVGGGDVASSGSXXXXXXXXXXXXXXPSTPRNPTALAADIAREFTEAKYLWTGDINPEMYDLYCTFTDPTLSFAGLETFQRNLANLQPVLSRLVRDSDVEQLYSCELAGDGKGXXXXXAVRARWRMTGNLRVPWRPRIDLEGQTTFTFKDYGGDRGCLITAYQEEWGLSAGEAVMQLVTPFK 225          
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Match: A0A830HR29_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HR29_9CHLO)

HSP 1 Score: 135 bits (340), Expect = 8.110e-34
Identity = 74/193 (38.34%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  262 STAVSEFEQTSGSVKAFVGGLTDLFVRFAGGDEDSEALSADTSAKASLSEAELEAGIRQEYAK-NYLWTGDINEDLYEEDCNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYS-CELRQEDSCVQTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEALMQIFRPGKRDS 834
            S ++++++ TS   +  V  LT      A GDE   A   D   +  +S  ++   I +++ + NYLWTGDI+ D+Y++ C FTDPTLSF+G + ++RN+  L+  ++  V + RS L     L    +  + RW+M+G+LRLPW P ++V GRT ++ D+S+G RI  YDE WE++A+EALMQ+  P  + S
Sbjct:   61 SVSLAQYDSTSPLTRFVVSALTTAIGGDAHGDEVGLAQKEDD-LRPPVSPQDVRNAIERDFCEGNYLWTGDISMDVYDKGCVFTDPTLSFTGTAAFQRNLERLEPWIEKLVVDPRSELRGPVVLDDSQAFCEARWQMIGELRLPWRPVVNVKGRTRYTLDTSKGGRIVRYDENWELKASEALMQLVTPTTKAS 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig94.18542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X2_ECTSI8.780e-16799.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYI6_9STRA1.220e-5145.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9RDB2_CHRCT7.470e-4442.34Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4KR88_GUITH1.510e-4240.64Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S1DMA4_HEMAN1.470e-4142.86Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0Z2E3_9CRYP3.040e-3940.84Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A061RRB7_9CHLO1.690e-3840.54Uncharacterized protein n=2 Tax=Tetraselmis sp. GS... [more]
C1E2X3_MICCC1.140e-3541.95Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1EIW1_MICCC1.460e-3441.55Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A830HR29_9CHLO8.110e-3438.34Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig94contigEcto-sp6_S_contig94:536894..540751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score478.4
Seed ortholog evalue2.2e-132
Seed eggNOG ortholog2880.D7G2X2
Model size1144
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CINV@1,2S3RX@2759
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-09_004600.1
Cds size801
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig94.18542.1prot_Ecto-sp6_S_contig94.18542.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig94 536942..540456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350578.9583137-UTR-Ecto-sp6_S_contig94:536893..5369411682350578.9583137-UTR-Ecto-sp6_S_contig94:536893..536941Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 536894..536941 +
1682350579.038887-UTR-Ecto-sp6_S_contig94:540456..5407511682350579.038887-UTR-Ecto-sp6_S_contig94:540456..540751Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig94 540457..540751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350578.9796674-CDS-Ecto-sp6_S_contig94:536941..5372891682350578.9796674-CDS-Ecto-sp6_S_contig94:536941..537289Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 536942..537289 +
1682350578.9899807-CDS-Ecto-sp6_S_contig94:537893..5379891682350578.9899807-CDS-Ecto-sp6_S_contig94:537893..537989Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 537894..537989 +
1682350579.008245-CDS-Ecto-sp6_S_contig94:538646..5387871682350579.008245-CDS-Ecto-sp6_S_contig94:538646..538787Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 538647..538787 +
1682350579.0181377-CDS-Ecto-sp6_S_contig94:539545..5396031682350579.0181377-CDS-Ecto-sp6_S_contig94:539545..539603Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 539546..539603 +
1682350579.0286899-CDS-Ecto-sp6_S_contig94:540298..5404561682350579.0286899-CDS-Ecto-sp6_S_contig94:540298..540456Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig94 540299..540456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig94.18542.1

>prot_Ecto-sp6_S_contig94.18542.1 ID=prot_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=267bp
MALTPLCSPTRLVGLALGVSSLAASFMNHRCCTSSAYWTGGLSAAPSHRY
RSRALRLAPRQEQGEGDTDSQSTAVSEFEQTSGSVKAFVGGLTDLFVRFA
GGDEDSEALSADTSAKASLSEAELEAGIRQEYAKNYLWTGDINEDLYEED
CNFTDPTLSFSGLSTYKRNVGSLQGVLDLFVRNSRSVLYSCELRQEDSCV
QTRWRMVGDLRLPWGPTIDVVGRTTFSYDSSRGNRIFSYDEVWEMEAAEA
LMQIFRPGKRDSAPEQ*
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mRNA from alignment at Ecto-sp6_S_contig94:536894..540751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig94.18542.1 ID=mRNA_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3858bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:536894..540751+ (Ectocarpus species6 EcLAC_371)
GCCTGGCCCTCTCGTGCACCACAACTCGTGCTGTAGTCTAGGAGTCACAT GGCATTGACACCATTATGTTCCCCTACGAGGCTTGTGGGGTTGGCGCTGG GTGTCTCCTCGCTTGCGGCGAGCTTCATGAACCACCGATGTTGCACATCG TCGGCGTATTGGACAGGAGGGTTATCAGCGGCGCCATCTCATCGATATCG ATCGCGGGCGTTGCGACTCGCTCCTCGACAAGAGCAGGGCGAGGGCGACA CCGACAGTCAAAGCACAGCCGTTTCTGAATTCGAGCAGACGAGCGGGTCG GTCAAAGCGTTTGTTGGTGGCTTGACCGATTTGTTCGTGCGTTTTGCTGG CGGCGACGAGGACAGCGAAGCTCTCTCTGCCGACACCTCTGCCAAGGTAT GCATACGAACTACAATGTACATGCACCGATGTCTCTTTCGCTCCTCTCGA TGCTTGGTGCAGCTATTGCCGGGATCGTTCATGACGGAAAGATTGTGCCC TCTGCTTAATAATCGAATCGCACAACAATCGCTGGGATACTGAGTCCCCT TCCACGCTGTTGTCTGATGTCACGCGCCCGTATGGCGTGGAACCGACACG TACATCCAAATCATGTGCGCGCCGCGGCAGTTGCGTTGCAGGGTCAACGT ACGCCGTGCCGTGCAGTGCCTCTCTCTTAGAGGCAACGAAAAGTTCAAGA GGCAACCTACGAATGGGCGAATGGGTTAGAGTTTTTGCCAGTTTGGCGGG AAAAATGGTCGGTTAGCATGTGATGGTCATTGCCGTCTTGAACAACAACG GGTAGGACCATCTCCCTGTGATTTTCGGCCTCCGCGCACTTTCCATGAAG TGATCAGCCGCAACATACATACCGTTGGTGTCTCAAATCCAAGTGCCGGA TGCATTTGTCATTGATGATTCCAATTGGCCGAACGCATGCAAACATAAAC CAGTGCGACTTAACGCTTTCGGTTTTCACGCGACTTACCGTCGGAAAAAG GCTAGCCTATCCGAGGCGGAGCTTGAAGCCGGTATAAGACAGGAGTACGC CAAGAACTACCTCTGGACGGGGGACATCAACGAGGATTTGTATGAGGTGG GTTTCCCATCTGATGCTCTTTGGGGAATTTCACAGGGCAGTCGAAAACAA ACGACTACACGCATGTTGTAGAGTGTAAGAAGCAAGATTTGGCGGTGAGA CTCGCCGTCCACGTGACCCCGTACCGACGGAGGTAGTTTGCTTGCGTTCG TTACATAGTTCGTTTCACCTCAGGGCAAGCCATCTCCTTAGGCCATACCG CTGAACATCGTTACCGTTCGAGTGCATGCGGGTGGCGTGGGTTTTTCTGA AACACCCGTTCGGGCCGGTATCCCTCTCGTCAATCTTCGCCTGCTGTAGG ATTTTCCATCAATTGCAATACGAGCAGCACTTGGTGACGCTTTCAACACA ACCGTGCCCCAATTCCGATCTCTGTGACGAAGCAGCAATAGGAGCGAAGA ACCTTGCTTTATCCTCACAACGGACGATTGACACCGTCAGTCTGTCCCTG TCGTAGAGGACAGGTTGCCCTTTTTGCTCTCCCATGCCAAAGTCCTCGTG TATGCCATAAACGATACCATACACGGTAGCTCGACCGTTGTCCACGTTCT TGCTGTTTCCTCATTGTCAGCGTCAACGTACACACGTAATGCAAAGCAAA TGTTGAAAGGTTTTGTCTGCCGACGGGGGTTCCCGTGTGCTTCGCCTTTG CAGGAGGACTGCAACTTCACGGACCCCACGCTGTCGTTCTCCGGGCTATC GACGTATAAACGCAACGTGGGCAGCCTGCAAGGCGTGCTCGATTTGTTTG TTCGTAACAGCCGCTCCGTGCTGTACTCGTGCGAGCTTCGACAGGTACAG CACGTTGATGGCGAACATGCCTGAACTGTCGTGCTTGTCGCATCTCCCGT TTGCGGTCATCCACAGGATCAAGGACGGCGGTTGTCGGTCGAGCGTAGTG ACTGCCAGGGCATCTGGCGTCTCTCGTTAAGACGTAACTTCCCCTATCCC TGGAGAAATACGAAATTTGATTTTCTACAGTAGAAAACCCTGCTTCTTTA TAAAATCTTGCCGACTGCTGCGTAAGTGTAAGTCTTCCGCCAACGCACAC GCGAATTTTAGCAGGCCAACACGCCACATATCCGAATCGTAGCTCCAGAG AGTAGTCAGAACGCTGTACAAACGACGTTTTCATGTATGGAAACTCACAT ACTGGCACAACTTGGGGACACGTTTCCTGTGCCCCTTGTCGCAGATCCAT CATTGTCTCTATTTCCCCAAACAATCTCTCTAAGTTGTGCTTGGATTGAA CCACGTTCCTTGAAGGGCTGGCAAGTGGACGCAAGGGTTGGCATGTAGCC CAAGAGTATGGAGCAAATGGTCCCGAATGGCTGCTCTGCTCTTCCGCTGT TTCAACCTTCGGCACAGGCATTCTTAAGGCTGATGGAGGCGTGAGTCAAT TGTGTCGTGAGGGCAGGGGGGCATGTGCTGATACCAGCGGGCATGTGCCC CGAGAACCTATGTTATTTTCTTCGTAAACGTGCGGGAATGCCCGCGAATA AGCTTTTTTTCTCTGTCCGTCTGTTTTCGTCTGTCGCCGGCGCTCTGTCC AGGAGGATTCGTGCGTCCAGACTCGATGGAGGATGGTGGGGGACCTCCGA CTACCTTGGGGTGCGTAGGTGGAGCAAGTCGACCCTTGCTTCGAAAACGA CGGAAATTACGGTTTGCACATTCCCCGATTTTTGTTAGGTCTTCACCGTG TACTGCAGTTGACGTGGTTCTCTCTTTTCTTGGGACAGAAGACCATCACG GTGTCTTATCTACCTCACGTAGTGGTGTGCATCCATGAGAAGCTACGAAC CAAAGGTCGTGCCGAACAATGCCATGTGGTGATGCCTTCATGTTCATGTT CATCGTGAGAAGAAATTATCAATCCTTGTTATCTCACTCAGGTCGTTTTT TTTCATGTAAGAATACTTGTTGTCGAGTAGCCTAACTAGGATCTGGACTC GGAACCTTGACCATCCGCAGGTTTCGGCTCTGTGGACAAGCCGGATCTAC TCGCTGTCGCGCGGCGTTCGTTGGTAGGGTATCATCGATTGGATCACTTC AATACCCCTGCAGTTGCCCTGGTGATACGTCCGGCAATACACAGGCCCTT ACGATTATCTCTACGCAAAACAAAACATGTTCGTTTTAGTTTCTGTACGT TTGTGCAAGACTGCTGCCTCTAAACTCTGCTCGCCTGCGGTGGGTGTGAA AATGTTTTTATCTTGCAGTTCTTACCCCGTGGCCACGATCAATGTTTTGT GTGGTCGCAACCGCCATGGCCACGTCAAGGTTTTGCTTCCCCGTCTGTAT CTCAGGTCCAACGATCGACGTGGTGGGAAGGACGACGTTTTCGTATGACT CGAGTCGCGGGAATCGCATATTTTCGTACGACGAGGTTTGGGAGATGGAG GCAGCTGAAGCTCTGATGCAAATTTTCAGACCCGGGAAGCGGGATAGCGC TCCAGAACAATAAGGCAAAGTTGGAGTTGTGGGAGGAATCGCCCAACGTG AGGCGTGGGTGGCGCCGTTGATCAAACCGACGACCAACCGGTGCGACTCT GTTGTCTTAGAGAGCCGTCTATCCCGGGGAGCACCGGCGACCCCGAGTTG GCGATTGCCGATAGAATGGATACGGTTTGGTGGCAGGGGCAAAGGTGGTG CTTGTTATTTATCGACCACCTCGTGATTCCCGGGATCCGACCTACGTAAG GGACCTGGTCCAAGAGCACGACGTGTTTTCCTCGTGTAGATTCCAAACAG ACAGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig94:536894..540751+

>mRNA_Ecto-sp6_S_contig94.18542.1 ID=mRNA_Ecto-sp6_S_contig94.18542.1|Name=mRNA_Ecto-sp6_S_contig94.18542.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp6_S_contig94:536894..540751+ (Ectocarpus species6 EcLAC_371)
ATGGCATTGACACCATTATGTTCCCCTACGAGGCTTGTGGGGTTGGCGCT
GGGTGTCTCCTCGCTTGCGGCGAGCTTCATGAACCACCGATGTTGCACAT
CGTCGGCGTATTGGACAGGAGGGTTATCAGCGGCGCCATCTCATCGATAT
CGATCGCGGGCGTTGCGACTCGCTCCTCGACAAGAGCAGGGCGAGGGCGA
CACCGACAGTCAAAGCACAGCCGTTTCTGAATTCGAGCAGACGAGCGGGT
CGGTCAAAGCGTTTGTTGGTGGCTTGACCGATTTGTTCGTGCGTTTTGCT
GGCGGCGACGAGGACAGCGAAGCTCTCTCTGCCGACACCTCTGCCAAGGC
TAGCCTATCCGAGGCGGAGCTTGAAGCCGGTATAAGACAGGAGTACGCCA
AGAACTACCTCTGGACGGGGGACATCAACGAGGATTTGTATGAGGAGGAC
TGCAACTTCACGGACCCCACGCTGTCGTTCTCCGGGCTATCGACGTATAA
ACGCAACGTGGGCAGCCTGCAAGGCGTGCTCGATTTGTTTGTTCGTAACA
GCCGCTCCGTGCTGTACTCGTGCGAGCTTCGACAGGAGGATTCGTGCGTC
CAGACTCGATGGAGGATGGTGGGGGACCTCCGACTACCTTGGGGTCCAAC
GATCGACGTGGTGGGAAGGACGACGTTTTCGTATGACTCGAGTCGCGGGA
ATCGCATATTTTCGTACGACGAGGTTTGGGAGATGGAGGCAGCTGAAGCT
CTGATGCAAATTTTCAGACCCGGGAAGCGGGATAGCGCTCCAGAACAATA
A
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