mRNA_Ecto-sp6_S_contig92.18397.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18397.1
Unique NamemRNA_Ecto-sp6_S_contig92.18397.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: D7FPU9_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU9_ECTSI)

HSP 1 Score: 800 bits (2065), Expect = 1.950e-285
Identity = 558/582 (95.88%), Postives = 561/582 (96.39%), Query Frame = 2
Query:  182 MEEMIAGKLLGLAAVAANSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPDDNWAEEVRETIPEEPLPEYLAALWDFAEGKIHSTSKAPGSGVASSSXXXXXXXX--PVSPPATPRMPSAGAFRQSRQTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPLAGSMAMSVLSEQASKQPAAAPATAAGADPAVAAASNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQQQRRKDGNTSTEGAKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSAEGSGASTLSXXXXXASSRDSGAVLPPEFWTSRQVLERYVLPRQQLLQG 1921
            MEEMIAGKLLGLAAVAANSA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAG+QHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLP+DNWAEEVRETIPEEPLPEYLAALWDFAEGK HSTSKAPGSGVAS  XXXXXXXX  PVSPPATPRMPSAGAFRQSRQTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X  X SPPLAGSMAMSVLSEQASKQPA APATAAGADP VAAASNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQ   RKDGNTSTE AKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSA+GSGASTLSXXXXX SSRDSGAVLPPEFWTSRQVLERYVLPRQQLLQG
Sbjct:    1 MEEMIAGKLLGLAAVAANSAAADLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGSQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPEDNWAEEVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVASXXXXXXXXXXXXPVSPPATPRMPSAGAFRQSRQTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPXRPX-SPPLAGSMAMSVLSEQASKQPAVAPATAAGADP-VAAASNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQXXXRKDGNTSTESAKQMQAQPRGWSDQGSTTSESRGGSDLSEEDAANERKSADGSGASTLSXXXXXXSSRDSGAVLPPEFWTSRQVLERYVLPRQQLLQG 580          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A6H5L2A4_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A4_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 1.880e-115
Identity = 244/275 (88.73%), Postives = 247/275 (89.82%), Query Frame = 2
Query:  179 MMEEMIAGKLLGLAAVAANSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 1003
            MMEE+IAGKLLGLAAVAANSA            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDH TAGVLLALSCSP+QCQEGPAGNQH SSRSSPALKLPKAAATPAASRSSKGS RDWG+EVASHEDALRKITQEFERMDGSQQAGD           XXX SR AKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM
Sbjct:    1 MMEEVIAGKLLGLAAVAANSAAADLAATGVESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHHTAGVLLALSCSPQQCQEGPAGNQHQSSRSSPALKLPKAAATPAASRSSKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDXXXXXXXXXXXXXXXSRAAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 275          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A6U4EHK2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHK2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.050e-13
Identity = 89/242 (36.78%), Postives = 112/242 (46.28%), Query Frame = 2
Query:  380 GKRKMTPDDRKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHED------ALRKITQEFERM-DGS-QQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPDDNWAEE 1081
            G+    P   K    +R  R RERNR+HARKTRQRKKQ ++ELQ +I  L+ E   L Q   D  TA VLL +S        G A     S  S    KL                     EEV   E       A   +    E   DG  ++   DE+       K     R  K T  +R  +RRERNRMHAKRTR+RKKLF+E    +I KM+ EN Q+   +R SG++LP+    EE
Sbjct:  156 GRSSSPPPQTKVKEVERVHRMRERNRMHARKTRQRKKQQMKELQARIDKLKHEGTLLRQHIFDRYTANVLLVMS--------GKADRSETSQLS----KL---------------------EEVMDREGINCLLGAASALQPRLEMTADGKLKETAPDED-------KDYKPRRRGKYTPEERDRVRRERNRMHAKRTRDRKKLFLEESENLIFKMEEENVQMRRYLRQSGLELPEQLLREE 357          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.470e-10
Identity = 73/216 (33.80%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  443 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALK-----LPKAAATPA----------ASRSSKGSGRDWGEEVA-SHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 1042
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C  K    G +G+  P  R    LK     +P A+  P           + +   G+     EE+A +  +A+  +      + G+   G D E           G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK----GESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALP-----VAGNPNDGIDYELL---------GKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: BZP14_PHATC (bZIP transcription factor 14 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=BZP14_PHATC)

HSP 1 Score: 71.6 bits (174), Expect = 1.860e-9
Identity = 77/226 (34.07%), Postives = 109/226 (48.23%), Query Frame = 2
Query:  407 RKAVAADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLAL-----SCSPKQ-----------CQEGPAGNQHPSSRSSPALKLPKA-------AATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVEN 1015
            +KA   DR  R+RERNR+HARKTRQRKK+ +Q L+ +   L+ E+ RL Q+  +  TA +L+ L     S SP +            +E P  ++ P     PAL LP          A P  + S +      GEEVAS  D                 +GD+++           G   +K T  +   +RRERNRMHAKRTR+RK++F E  + M   ++ EN
Sbjct:  112 KKADTDDRVQRSRERNRIHARKTRQRKKEQMQSLEGRATDLKHEQIRLKQIINEKNTANILVGLFSKGQSQSPNEDPRVEALMYRSVEEIPDPSKIPEL---PALILPGQHASKKIKVAVPVVAASPQSMSDGGGEEVASTSDV----------------SGDEQQVPDDGIDYDLLGKDRSKCTPEELDQIRRERNRMHAKRTRDRKRIFTEEMAEMCRILEEEN 318          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.010e-9
Identity = 73/216 (33.80%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  443 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALK-----LPKAAATPA----------ASRSSKGSGRDWGEEVA-SHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 1042
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C  K    G +G+  P  R    LK     +P A+  P           + +   G+     EE+A +  +A+  +      + G+   G D E           G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK----GESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALP-----VAGNPNDGIDYELL---------GKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.860e-9
Identity = 73/216 (33.80%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  443 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPSSRSSPALK-----LPKAAATPA----------ASRSSKGSGRDWGEEVA-SHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRA 1042
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   +  TA +LL + C  K    G +G+  P  R    LK     +P A+  P           + +   G+     EE+A +  +A+  +      + G+   G D E           G   +K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  + +
Sbjct:  183 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK----GESGDVDP--RVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALP-----VAGNPNDGIDYELL---------GKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 378          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A6U2ACZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ACZ3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.950e-9
Identity = 78/234 (33.33%), Postives = 106/234 (45.30%), Query Frame = 2
Query:  443 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGNQHPS-----SRSS------------PALKLP--------KAAAT---PAASRSSKGSGRDWGEEVASHEDALRK---ITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGI 1051
            RERNR+HARKTRQRKK+H+Q LQ +   L+ E+ RL Q   +  TA +LL +         G A + +P       RS+            PAL LP        KAAA    PAA+    G G +   E+      L     I  E    D S                        K T ++   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  +    +
Sbjct:   32 RERNRMHARKTRQRKKEHMQSLQNRADELKNEQLRLKQAINEKNTASILLGMFSRDGPASGGSAKDVNPKVEELLRRSAEEIPDASKIPELPALILPGQHNSKKNKAAAQMQPPAAAAPLDGGGLEGSPEMGPQHGGLMPDDGIDYELLSKDRS------------------------KCTPAELDRIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLESENGLLQGHLEGLSV 241          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A835ZF21_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF21_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.540e-9
Identity = 82/264 (31.06%), Postives = 115/264 (43.56%), Query Frame = 2
Query:  425 DRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPA---GNQHPSSRS--SPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDDEEAATHAGGKXXXGSRGAKGTLSD-----RTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLP--------------DDNWAEEVRETIPEEPLPEYLAALWDFA 1144
            DR+ R+RERNRLHARKTRQRKK  ++ LQ +I  L++E   L +   +    G L  +           A   G Q P   +      +L +AA    A         DW  +++ H  AL  +      MD    A   + AA      XXX                R  LRRERNRMHAKR R+RKKL V+A + ++  +   NA     +R + + LP                 +AE+       +PLPE +  LW++A
Sbjct:   23 DRRKRSRERNRLHARKTRQRKKAQIESLQDRIRALKREGDLLHKQQKEQEVLGTLALMQSHAAAVPAAVAAAHGAQPPQDEAHMGKISELAQAAIAVWAEA-------DWAAQLSEHCAALTALMNLCNTMDSQYMASLSDAAAAERAXXXXXXXXXXXXXXXXXXAALRAQLRRERNRMHAKRARDRKKLLVDASTAIVGVLDARNALARAHLRRAALSLPPALAATLSTAAAAPSSPYAED---DAASDPLPEDVFELWEYA 276          
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Match: A0A7S2L7Q6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7Q6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.430e-8
Identity = 79/242 (32.64%), Postives = 112/242 (46.28%), Query Frame = 2
Query:  443 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLL--------------------ALSCSP-------KQCQEGPAGNQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHE--DALRKITQEFERMDGSQQA--GDDEEAATHAGGKXXXGSRGAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPDDNWA 1075
            RERNR+HARKTRQRKK+H+Q+LQ +   L+ E+ RL Q   +  TA +L+                    A+S  P       +  +E P  ++ P     PAL LP       +S S+ G+  D     A+    D       E E+ DG      G D  + T A                +   +RRERNRMHAKRTR+RK++F+E    MI +++ ENA L+  +       PD+N A
Sbjct:   18 RERNRMHARKTRQRKKEHMQQLQNRADELKLEQIRLKQCINEKNTANILVGLFQTGEDSAAADGSDDTETAVSMDPQVEVLLKRPTEEIPDASKIPEL---PALILPGQHTKRKSSSSNDGASEDNTPTAAAAPAADGEGVTIPEGEQEDGIDYVLLGKDRGSCTPA----------------ELDQIRRERNRMHAKRTRDRKRIFMEEMETMIKQLEDENALLQGHMDKLNENNPDENIA 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FPU9_ECTSI1.950e-28595.88BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2A4_9PHAE1.880e-11588.73BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U4EHK2_9STRA9.050e-1336.78Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4VPU5_9STRA8.470e-1033.80Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
BZP14_PHATC1.860e-934.07bZIP transcription factor 14 n=1 Tax=Phaeodactylum... [more]
A0A7S4W4V3_9STRA2.010e-933.80Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RSS5_9STRA2.860e-933.80Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A6U2ACZ3_9STRA5.950e-933.33Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A835ZF21_9STRA9.540e-931.06BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2L7Q6_9STRA1.430e-832.64Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:186723..191120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score75.9
Seed ortholog evalue7.1e-11
Seed eggNOG ortholog2850.Phatr45314
Model size1924
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Basic region leucine zipper
EggNOG OGs2CYZ1@1,2S7C7@2759,2XC3T@2836
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-18_001760.1
Cds size1746
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.9739153-CDS-Ecto-sp6_S_contig92:186722..1876431682350559.9739153-CDS-Ecto-sp6_S_contig92:186722..187643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 186723..187643 -
1682350559.98319-CDS-Ecto-sp6_S_contig92:189653..1904781682350559.98319-CDS-Ecto-sp6_S_contig92:189653..190478Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 189654..190478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350559.9909432-UTR-Ecto-sp6_S_contig92:190478..1905631682350559.9909432-UTR-Ecto-sp6_S_contig92:190478..190563Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 190479..190563 -
1682350559.9987366-UTR-Ecto-sp6_S_contig92:191027..1911201682350559.9987366-UTR-Ecto-sp6_S_contig92:191027..191120Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 191028..191120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18397.1prot_Ecto-sp6_S_contig92.18397.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 186723..190478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18397.1

>prot_Ecto-sp6_S_contig92.18397.1 ID=prot_Ecto-sp6_S_contig92.18397.1|Name=mRNA_Ecto-sp6_S_contig92.18397.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=582bp
MMEEMIAGKLLGLAAVAANSAAADLAAAGVESEEEEEDRCSWSRDGGGDT
ASYEEGGSEDEEEDDRAGKRKMTPDDRKAVAADRKARNRERNRLHARKTR
QRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEG
PAGNQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRK
ITQEFERMDGSQQAGDDEEAATHAGGKGGGGSRGAKGTLSDRTALRRERN
RMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPDDNWAE
EVRETIPEEPLPEYLAALWDFAEGKIHSTSKAPGSGVASSSSSATATATP
VSPPATPRMPSAGAFRQSRQTSSSSSASSSSCSSSFYSTHSRRRLSSAAT
TKVPPRPPSPPLAGSMAMSVLSEQASKQPAAAPATAAGADPAVAAASNPG
QALEDASALCAFMEAAQTRSVKRVRVAPQQQQQRRKDGNTSTEGAKQMQA
QPRGWSDQGSTTSESRGGSDLSEEDAANERKSAEGSGASTLSSEEEAASS
RDSGAVLPPEFWTSRQVLERYVLPRQQLLQG*
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mRNA from alignment at Ecto-sp6_S_contig92:186723..191120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18397.1 ID=mRNA_Ecto-sp6_S_contig92.18397.1|Name=mRNA_Ecto-sp6_S_contig92.18397.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4398bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:186723..191120- (Ectocarpus species6 EcLAC_371)
CGATCGACATCCTACCACCAAAACAACACCCACGCACGGGTAGGGTCATA CCTTCAGAGGATTCCTCGCCCTGCCGCCACAAGGGCGAGAGAGGTGAGCT TGCGAGGGAAGCTCCTCTGCTTGACGATGAATGGTTTCAGTGGTGTAGGG AAAAAAGAGAGTCAGCACAGATATTTTGCGCGTGTGCCATTGCCTAGAAG GCATGGGCGGCACGTTATTTGCTGTCGCATGTTGTTCGCCACCTCGTCAA TTGCGCTCGAGACGCTGTCTTTGCCGCCCCGCACGGGAGCGCGAGGGTGA ATCTTGTTGGTGTTCTGTTTGATGTGCCTTTGCGTTCCATGGGCGCCGCG TGTTCCTTTACTTTGCTCTGTTTACACGTGTATGGAGCAAGCTGCTGTCA TCGAACGCACACCACCGGTGACTCAAAAAATGGGCTTCGCGGCTGCCCCT CCCCCTCCCCCCCATGTCCACCGAAGCCGACCATACAACTTGACCCCGCT TCGCCCTCCCCTCCCCTGGCTACCGCTCTGACTCCTCGCCGTCCTCGGGC ATGTCAGCCTGAACGCGAAAGACCACCCCAATCCATTCGAGAAACAACAG CAGGAAAGAGGAAATATACAGATCTAAGAGAGGCAGCGGCACATGATGGA AGAGATGATCGCTGGCAAGCTCTTGGGCCTTGCTGCCGTTGCAGCCAACT CGGCGGCGGCAGACCTGGCCGCGGCAGGCGTCGAGTCAGAGGAGGAGGAG GAGGATAGATGTAGCTGGTCACGCGATGGTGGCGGCGACACCGCTTCTTA CGAGGAGGGTGGCAGCGAGGACGAGGAGGAGGACGACAGGGCCGGGAAGA GGAAGATGACACCAGATGACAGAAAAGCTGTTGCAGCCGACAGAAAGGCT CGCAACCGCGAGCGGAATCGCCTCCACGCGCGCAAGACGCGCCAGCGGAA GAAGCAGCACGTGCAGGAACTGCAGCTTAAGATCTGGGGGCTTCGCCAGG AACGCCAGCGCCTCCTCCAGCTGTCCACCGACCACCGTACCGCAGGGGTG CTCCTCGCCCTCAGCTGCTCCCCCAAGCAGTGCCAGGAAGGGCCAGCTGG AAACCAACACCCATCATCTCGCTCGTCCCCGGCGTTGAAACTCCCCAAGG CAGCCGCGACTCCCGCGGCAAGTAGGAGTAGCAAGGGCAGCGGCAGGGAT TGGGGCGAGGAGGTCGCCTCGCACGAGGACGCCCTGCGCAAGATTACACA AGAGTTTGAGAGGATGGACGGGAGCCAGCAGGCCGGGGACGACGAGGAGG CTGCAACGCACGCCGGAGGCAAGGGCGGCGGCGGCTCGCGCGGAGCCAAG GGGACGCTGTCTGACAGGACCGCGCTGCGGAGGGAGCGGAACCGCATGCA CGCCAAGCGCACGCGTAACCGCAAGAAGCTGTTCGTGGAGGCCTGCAGCG TCATGATCGACAAGATGGTGGGTGAACTAGAGCACGTCTTGTTTTGGATT TTTTGAAAAATAATATGTCCAGTGTCCTTGGGTCCAAACCACACGGTTGG GAAGACACGTGTTTCTTTCGAACAACGACGGCTGCAGCAGCTGTCCCGCC ACTCGACCTTTCCCGTACTTGGGAGTGTCCTCCCCATGGAGAGAGCTTTC CAGTTGATGTACTCTCCACTTCACTCACGCCCGACTTGTTGTACGATGTG CATATGCATAAAATGGATAGGAAAAAATGCCGACCTTGGGTGTTCTGTGA ACCAGCTCTATCTGAATGCACCGAACTGCCCGCCTGCAGACTACTCCACG TTACATTTTTCTACGCATAGCCCAGAGCAAATCGTTTTCGTTCGACGTCT CCATTGTTTCATTGCCGAACTTGCGTTGTGTTTGGTCGTCCACAATTCTT TCCTCTTTCACCTTGGTTGTTACCGACTCGGAATTGCCCCTCATTTGAGC AGTGAAACATCAATTAGTCAGAGAGGTTGCATGACGTACCAGGACTGAAT TTCCTGCTCTATCCATACTCTTTTGCGGGGTGTTTTCTGTCAACGGTTGT TCGTCGTCACCATTTATTTGAGGTCTTGTGATTACGCCCTCTCCCCGCGT CAAGCTTGCGAGCTAGCACTGGCGTGGATTTCAGTCTTCTCTGGTATCTG TGTGCTGCATCTGCGTGAGTTGATGTCCATCAGTGGACACGTGTTTACAG CAGCGGGCAGACCAGTAGTATTCGGAAGACTTGCGTTACTTTCGTGGACC ACCATCGTTGTTGCGTTGTGTTGGCGGTGTGGCCTGAACGTTTTTCCTCC TTTTTGTAGGGGTATGCAAGCATATATAAAATGACTCAAGCGTGCAGCAC ATTGTTGCCAAGTTTCAAAGCGTAAGTATCTGTAATACATTTCCGTGCAT TTCACCCGTGAGCATTGGCCTGCCGTAATCATGTCATCGTTCTTGATAAC ATCTATCGCCGAGACAAATGGGGAAATATGGGCATCGCCATCCATCCGCT TGATAATGTTCTGCCCCCCACTGCTGTTCCCTACGGAAAATGCCTTAGGG ATTCGCGGTGTTATATCAAGAACAAAAAAAGCCTTCTGGGGCAGTGCGTA CCCCACTTTTTCCTTTTTGCATTGTAGCCTCGCGATCGCGCACGTGACTG CCAAGTTAGTCTCGGCTGACTATTTCTTACCACAATATTTACCCGTATAC TACCTCGTGAGGTACGGATTGTGGATCAGTTGTTCAGCTTCATTCGTCAT GTACCACAAGCACGAAGTTGATGTATTTTTTTCAAGCTTCATTTTTTGCT CCCGCTGGCCACTTTCCCTGAGTTGATGACACCTCATAAGAATTGAGAAG GCAGCGCGTCGTCAGTCCAGCCAGACAGCGTCCAATGCAACAAATTGGTG TATTTCAACTAGTTGAACAGATGGATAAGTATGGACCAAGGCTTCAATAG TGCTTTTTGGAGTAATTCATATACCATGAGAAAAGAACAGCAGTTCAACA GCGGGGTATTCACTGACGCGGCGTTTGTCAAAAATGCTGCGACGTGTCCT TGTGGGAGATACAGTTTTGCGAACGGATGATTGTGTGGAGGGTTTCATGT CACAGCAAGTGTTGGGAGAACTGGTCGTTCAACAGTTTTCCTCTTTAGTT GCTCGTTGTTTCGGATACGGCCAGCGTCGAAAGTGGACCTTTCCGGTGTG AAGGATATTTAATAGGTGCTTACGCATGACTGGGTGCGTAGTCATGCATG AACACGATGTGTTTTTTCCTTGAAAATATTTCGAGGTGTTTGCAGTAGTT GATTGCGCGTGTGGTTTTTCTTTCTGATTGAACGATCCTTGGACATTCCT GAACCAGTTGGAGATTTACGAACTCCAAGTTGCTACACGTTTAATGGAGT CTCCGACCCGTTGCCCTGCTCTGATGTTTTCGCCTCCCGCCCGCTCTTCT CTATACGTGCCCCCCCGAACCCTGCAGAAAGTGGAAAATGCCCAACTCGA GCACGAAATCCGAGCGTCCGGGATCCAGCTGCCAGACGATAACTGGGCAG AGGAGGTGCGAGAGACGATCCCCGAAGAGCCCCTCCCGGAGTACCTGGCG GCGCTCTGGGACTTCGCGGAGGGCAAAATTCACAGCACCTCCAAGGCACC AGGTTCAGGGGTTGCCAGCAGCAGCAGCAGCGCGACCGCTACGGCCACGC CGGTCTCGCCCCCGGCCACGCCCAGAATGCCTTCTGCGGGTGCATTCCGA CAGAGTCGCCAGACGTCGTCTTCTTCCTCGGCGTCCTCGTCTTCTTGCTC CTCCTCGTTTTACTCGACCCATAGCCGACGGCGACTAAGCAGCGCGGCCA CCACCAAGGTCCCGCCCCGGCCCCCGTCGCCGCCCTTAGCGGGGTCGATG GCAATGTCGGTCTTGTCGGAGCAGGCATCGAAGCAGCCGGCGGCGGCGCC CGCAACGGCCGCAGGTGCTGACCCTGCTGTGGCGGCGGCATCGAACCCCG GGCAGGCGCTCGAGGACGCCTCGGCGCTGTGCGCGTTCATGGAGGCCGCG CAGACGAGGTCCGTGAAGCGCGTCCGCGTGGCGCCGCAACAGCAACAGCA GCGACGAAAGGATGGGAACACGAGCACCGAGGGCGCGAAGCAGATGCAGG CGCAGCCCCGGGGTTGGTCGGACCAAGGCAGCACGACCTCGGAGAGCCGT GGCGGGTCGGACTTGTCAGAGGAGGACGCGGCGAACGAGAGGAAGTCGGC GGAAGGAAGCGGCGCTTCGACGTTGAGCAGCGAGGAAGAAGCGGCATCGA GTCGGGACAGCGGCGCCGTCCTACCTCCCGAGTTTTGGACGTCGCGCCAG GTTCTTGAGCGATATGTGTTGCCTCGGCAGCAGCTTCTACAGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:186723..191120-

>mRNA_Ecto-sp6_S_contig92.18397.1 ID=mRNA_Ecto-sp6_S_contig92.18397.1|Name=mRNA_Ecto-sp6_S_contig92.18397.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1746bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:186723..191120- (Ectocarpus species6 EcLAC_371)
ATGATGGAAGAGATGATCGCTGGCAAGCTCTTGGGCCTTGCTGCCGTTGC
AGCCAACTCGGCGGCGGCAGACCTGGCCGCGGCAGGCGTCGAGTCAGAGG
AGGAGGAGGAGGATAGATGTAGCTGGTCACGCGATGGTGGCGGCGACACC
GCTTCTTACGAGGAGGGTGGCAGCGAGGACGAGGAGGAGGACGACAGGGC
CGGGAAGAGGAAGATGACACCAGATGACAGAAAAGCTGTTGCAGCCGACA
GAAAGGCTCGCAACCGCGAGCGGAATCGCCTCCACGCGCGCAAGACGCGC
CAGCGGAAGAAGCAGCACGTGCAGGAACTGCAGCTTAAGATCTGGGGGCT
TCGCCAGGAACGCCAGCGCCTCCTCCAGCTGTCCACCGACCACCGTACCG
CAGGGGTGCTCCTCGCCCTCAGCTGCTCCCCCAAGCAGTGCCAGGAAGGG
CCAGCTGGAAACCAACACCCATCATCTCGCTCGTCCCCGGCGTTGAAACT
CCCCAAGGCAGCCGCGACTCCCGCGGCAAGTAGGAGTAGCAAGGGCAGCG
GCAGGGATTGGGGCGAGGAGGTCGCCTCGCACGAGGACGCCCTGCGCAAG
ATTACACAAGAGTTTGAGAGGATGGACGGGAGCCAGCAGGCCGGGGACGA
CGAGGAGGCTGCAACGCACGCCGGAGGCAAGGGCGGCGGCGGCTCGCGCG
GAGCCAAGGGGACGCTGTCTGACAGGACCGCGCTGCGGAGGGAGCGGAAC
CGCATGCACGCCAAGCGCACGCGTAACCGCAAGAAGCTGTTCGTGGAGGC
CTGCAGCGTCATGATCGACAAGATGAAAGTGGAAAATGCCCAACTCGAGC
ACGAAATCCGAGCGTCCGGGATCCAGCTGCCAGACGATAACTGGGCAGAG
GAGGTGCGAGAGACGATCCCCGAAGAGCCCCTCCCGGAGTACCTGGCGGC
GCTCTGGGACTTCGCGGAGGGCAAAATTCACAGCACCTCCAAGGCACCAG
GTTCAGGGGTTGCCAGCAGCAGCAGCAGCGCGACCGCTACGGCCACGCCG
GTCTCGCCCCCGGCCACGCCCAGAATGCCTTCTGCGGGTGCATTCCGACA
GAGTCGCCAGACGTCGTCTTCTTCCTCGGCGTCCTCGTCTTCTTGCTCCT
CCTCGTTTTACTCGACCCATAGCCGACGGCGACTAAGCAGCGCGGCCACC
ACCAAGGTCCCGCCCCGGCCCCCGTCGCCGCCCTTAGCGGGGTCGATGGC
AATGTCGGTCTTGTCGGAGCAGGCATCGAAGCAGCCGGCGGCGGCGCCCG
CAACGGCCGCAGGTGCTGACCCTGCTGTGGCGGCGGCATCGAACCCCGGG
CAGGCGCTCGAGGACGCCTCGGCGCTGTGCGCGTTCATGGAGGCCGCGCA
GACGAGGTCCGTGAAGCGCGTCCGCGTGGCGCCGCAACAGCAACAGCAGC
GACGAAAGGATGGGAACACGAGCACCGAGGGCGCGAAGCAGATGCAGGCG
CAGCCCCGGGGTTGGTCGGACCAAGGCAGCACGACCTCGGAGAGCCGTGG
CGGGTCGGACTTGTCAGAGGAGGACGCGGCGAACGAGAGGAAGTCGGCGG
AAGGAAGCGGCGCTTCGACGTTGAGCAGCGAGGAAGAAGCGGCATCGAGT
CGGGACAGCGGCGCCGTCCTACCTCCCGAGTTTTGGACGTCGCGCCAGGT
TCTTGAGCGATATGTGTTGCCTCGGCAGCAGCTTCTACAGGGCTGA
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