prot_Ecto-sp6_S_contig92.18389.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig92.18389.1
Unique Nameprot_Ecto-sp6_S_contig92.18389.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length578
Homology
BLAST of mRNA_Ecto-sp6_S_contig92.18389.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 1065 bits (2753), Expect = 0.000e+0
Identity = 541/577 (93.76%), Postives = 548/577 (94.97%), Query Frame = 0
Query:    1 MESPLVEVASPPVEEPPGEXXGDAHGDAWSCPICFMWFDMPVSPPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCEWKGARRHLSLHVEGCAYEKIKGLIPRVSASLKQIHXXXXXXXXXXXXQNAAVANTRALLAHQRRAGSVFPAVYALLWRPPNWRLHQSPTPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSVVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAPRARAQPPLPPVEPVAVKTHDTVVNGVVRGITMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDASLEHVWLVMSAGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTKRRLIAAVCVCLFATIVTFFRDILQMVGYSRLLLSVLDSAHFRWELHIGRVVMGSLQQTRTNQDPNFARTHARDLLRSRLLLLWVVVGSSFFLLFMLTS 577
            MESPL EVASPPVEE P E  GDAHGDAWSCP+CFMWFDMPV PPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGC W+GARR LSLHVEGCAYEKIKGLIPRVSASLKQIH            QNAAVANTRALLAHQR+AGSVFPAVYALLWRPPNWRL+QSP PGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARS+VYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQA RARAQPPLPPVEPVAVKTH TVVNGVVRG TMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDA LEHVWLVMS+GIALDDKARLKKRHDSIFRDLRTPLPNMTDRT RRLIAAVCVCLFA IV FFRDILQMVGYSRLLLSVLDSAHFRWELH+GRVVMGSLQQTRTNQDPNFART ARDLLRSRLLLLWVVVGSSFFLLFMLTS
Sbjct:    1 MESPLAEVASPPVEEAPAEESGDAHGDAWSCPVCFMWFDMPVFPPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEMLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCVWEGARRDLSLHVEGCAYEKIKGLIPRVSASLKQIHTQVHQLEARVMAQNAAVANTRALLAHQRQAGSVFPAVYALLWRPPNWRLYQSPRPGGGVLSNVTLICLAPILFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQTPSLLKGLAIGEFLLEGTARSMVYFALKGLPDWKRTPALLFLLAPLFYPTVVQAVHRFEVQVKNAHNQAQRARAQPPLPPVEPVAVKTHGTVVNGVVRGTTMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDAFLEHVWLVMSSGIALDDKARLKKRHDSIFRDLRTPLPNMTDRTTRRLIAAVCVCLFAIIVAFFRDILQMVGYSRLLLSVLDSAHFRWELHVGRVVMGSLQQTRTNQDPNFARTRARDLLRSRLLLLWVVVGSSFFLLFMLTS 577          
BLAST of mRNA_Ecto-sp6_S_contig92.18389.1 vs. uniprot
Match: UPI001425A99E (ligand of Numb protein X 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A99E)

HSP 1 Score: 65.9 bits (159), Expect = 1.330e-7
Identity = 46/163 (28.22%), Postives = 71/163 (43.56%), Query Frame = 0
Query:   23 DAHGDAWSCPICFMWFDMPVSPPCQHTFCAGCLKSVVRAAAHRQRRSGNTGPXXXXXXLCREPFTPEVVQPSARIFEEML-KATVTCRNGDCAAQFCPLRWKKHQEE------CPSAVVQCMHHLVGCEWKGARRHLSLHVEGCAYEKIKGLIPRVSASLKQI 178
            +A  +  +C IC      P    C HT+CA C++SV+R   HRQ              + R P T +  +PS+ I + ML K  V C N      +C    ++   E      C   +  C+H   GC ++G+R  L  H+  C + K KG++   +  L  I
Sbjct:   35 EAVDEDLTCHICLQPLVNPTDTTCGHTYCAKCIRSVLRV--HRQ------------CPVDRSPLTAQDCRPSSLIIKRMLDKLPVVCPN----TTYCDDAMQRSDLEAHLANRCKGNMSHCIHAAHGCTFRGSRTALESHIRECPHAKQKGVVAIKTGGLTTI 179          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZ19_9PHAE0.000e+093.76RING-type domain-containing protein n=2 Tax=Ectoca... [more]
UPI001425A99E1.330e-728.22ligand of Numb protein X 2-like n=1 Tax=Anneissia ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 31..82
e-value: 1.2E-7
score: 41.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 31..83
score: 11.28
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 31..60
e-value: 1.9E-9
score: 37.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 23..140
e-value: 1.8E-18
score: 68.6
NoneNo IPR availablePANTHERPTHR10131TNF RECEPTOR ASSOCIATED FACTORcoord: 28..159
NoneNo IPR availablePANTHERPTHR10131:SF129TNF RECEPTOR-ASSOCIATED FACTOR 6coord: 28..159
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 577..577
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 482..502
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 558..576
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 308..327
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 273..288
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 289..307
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 339..356
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 328..338
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 503..557
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 357..481
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 262..272
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 238..261
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 24..89
NoneNo IPR availableTMHMMTMhelixcoord: 247..269
NoneNo IPR availableTMHMMTMhelixcoord: 482..501
NoneNo IPR availableTMHMMTMhelixcoord: 558..575
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 46..55
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 104..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:123490..127277 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18389.1mRNA_Ecto-sp6_S_contig92.18389.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig92 123378..127277 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig92.18389.1 ID=prot_Ecto-sp6_S_contig92.18389.1|Name=mRNA_Ecto-sp6_S_contig92.18389.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=578bp
MESPLVEVASPPVEEPPGEEPGDAHGDAWSCPICFMWFDMPVSPPCQHTF
CAGCLKSVVRAAAHRQRRSGNTGPSGPACPLCREPFTPEVVQPSARIFEE
MLKATVTCRNGDCAAQFCPLRWKKHQEECPSAVVQCMHHLVGCEWKGARR
HLSLHVEGCAYEKIKGLIPRVSASLKQIHAKVHQLEARVMAQNAAVANTR
ALLAHQRRAGSVFPAVYALLWRPPNWRLHQSPTPGGGVLSNVTLICLAPI
LFLALCGAGVFGGGGGLVVEERAVCLVGVAILGFVALLEHDNESPYHELQ
TPSLLKGLAIGEFLLEGTARSVVYFALKGLPDWKRTPALLFLLAPLFYPT
VVQAVHRFEVQVKNAHNQAPRARAQPPLPPVEPVAVKTHDTVVNGVVRGI
TMLLMNPVPALVGEVLAKLGVFVVSAALGPEKLDASLEHVWLVMSAGIAL
DDKARLKKRHDSIFRDLRTPLPNMTDRTKRRLIAAVCVCLFATIVTFFRD
ILQMVGYSRLLLSVLDSAHFRWELHIGRVVMGSLQQTRTNQDPNFARTHA
RDLLRSRLLLLWVVVGSSFFLLFMLTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like