mRNA_Ecto-sp6_S_contig9.18185.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18185.1
Unique NamemRNA_Ecto-sp6_S_contig9.18185.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18185.1 vs. uniprot
Match: D8LGY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGY6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.300e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:  275 MSVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQKCVLDAARKMQEQRSARKGWW 517
            MSVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQKCVLDAARKMQEQRSARKGWW
Sbjct:    1 MSVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERDDCLERFDDFQKCVLDAARKMQEQRSARKGWW 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY6_ECTSI1.300e-47100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1693205..1697827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1932
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionUbiquinol-cytochrome C reductase hinge domain
Ec32 orthologEc-14_001440.1
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.7808166-UTR-Ecto-sp6_S_contig9:1693204..16946161682350534.7808166-UTR-Ecto-sp6_S_contig9:1693204..1694616Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1693205..1694616 -
1682350534.821015-UTR-Ecto-sp6_S_contig9:1697553..16978271682350534.821015-UTR-Ecto-sp6_S_contig9:1697553..1697827Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1697554..1697827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.7911656-CDS-Ecto-sp6_S_contig9:1694616..16946701682350534.7911656-CDS-Ecto-sp6_S_contig9:1694616..1694670Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1694617..1694670 -
1682350534.8014307-CDS-Ecto-sp6_S_contig9:1696364..16964871682350534.8014307-CDS-Ecto-sp6_S_contig9:1696364..1696487Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1696365..1696487 -
1682350534.8116472-CDS-Ecto-sp6_S_contig9:1697484..16975531682350534.8116472-CDS-Ecto-sp6_S_contig9:1697484..1697553Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1697485..1697553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18185.1prot_Ecto-sp6_S_contig9.18185.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1694617..1697553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18185.1

>prot_Ecto-sp6_S_contig9.18185.1 ID=prot_Ecto-sp6_S_contig9.18185.1|Name=mRNA_Ecto-sp6_S_contig9.18185.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MSVENDMRAEEHEISNPVEECKKWQKKYYRCVKKFGRGYMRGEARSEERD
DCLERFDDFQKCVLDAARKMQEQRSARKGWW*
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mRNA from alignment at Ecto-sp6_S_contig9:1693205..1697827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18185.1 ID=mRNA_Ecto-sp6_S_contig9.18185.1|Name=mRNA_Ecto-sp6_S_contig9.18185.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4623bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1693205..1697827- (Ectocarpus species6 EcLAC_371)
GGGTGCGACAGCAGTAGAGAGAGGGCGTAGGGACCAAGGACAGAGGGGAC
AGTGCAGTGGAGATTGAGGCTGGTGTGGAGGAAAGCTTGAGGCCGACAAC
AGCAAGTGTGGAGGAGGAATACTGGACCGAAGTTGTTCATCGGGTTCTCT
GCCACCTCTGTCTCACTCAGACGCAGTGTTTTGGCTCATTAACCCCGCGT
CGTTCAGCGGTACAGTAGTTGGCATCTCGTCTGCTGCGGCCCTGCGTTCG
ACGCTGCTGGGCGAACAAATCAGAATGTCTGTGGAGAATGACATGCGCGC
CGAAGAGCACGAGATTTCAAATCCGGTTGAAGAGTGCAAAAAGGTGTGGA
ACGATATCTGTATGCTGTACGATGCCTTCAAAGACTAGCGCGCCGAAGAA
CACGGCCCGATTTTTCAAGATCGATTACTCGACGACGAAGAGGGCAAAAA
CGAAATGATACATTTTCCAAAAGCTCTCAACGATGGTTCCAACGCCGCCA
TTTTCGGCGCTGTGAGTCTTCCTGCTGTTGAGAAATCGATCTTTGAAAAT
CGGTCATTGTTATCTTGTGTCATTGGTACAGCTGTAAAGCATGCAGATAC
ATAAAACAATCCAAACATCATGATGAAGTATCGTCTACAGACAGCAGTGA
CCACATTTCAGTAGTGTGCCACATGATGGGAATGTGCGCTCCGTGTGTCT
AGGAACCACTTGGATGTAGTACACACGTTACAATGCTTCCTACGCCACAA
TGGTTCTTTCTTCAAAGGTACCTGCACACACGTTCTTGCCATGATCAGTA
TTTGTAGCTTGTTGCTGCAGCCTCCAGGGTAGCGTGATTGGAAATGAATG
GGTTGTGTCTGCATTAATTTTCTTAGAGTGCGAGTCGCCTTTGCACATAG
TGTACGCAAAGACAGCCGCCCATGGACATATTGTACGCAACCATCATTCC
AACTTCTGCTGATAATTTTGTATGGAAAGCTTGTGGCGACGACTCGACCT
CACGCTCCCATTTTACCACTGACCTTATTTTTGCCCCCTGCTTTGAAGGG
CACATGCATACGCAAAATGCACACACACACACACACATACACACAAACAC
ACACGCCTCCCCCATGCTCTCCCCTCACGGGGTCCCAGTTCATGGTAGAT
AGAAGTGTTTTGTGTTTTCAACCTCACGAAGACTGACGTCTTTTCATTGG
TCAGCCGGTTAGCGCGGTCGATGCTAACAATAAAAAAAGCACACACGACT
GACGACTTTTCATTGATCAGCCGAATGGCGCAGTCGACGCTACTTGAGAA
AACGCGCACATGGTCCAACGCCACCTTTGCTTTTAATCAGTGGCAGAAAA
AGTACTACCGGTGCGTGAAGAAGTTCGGGCGTGGGTACATGCGGGGAGAG
GCGAGGTCGGAGGAGAGAGACGACTGCCTGGAACGCTTCGATGACTTCCA
GAAGTGTGTCCTGGTAAGCGAGAGCGCCTAGCACGCGCGCGTGCACAGCC
GATTTCTGGGTTGGTTGTCTTCTAGCCGAGGCAGCAGCGCGGGATCCATA
CCATGGGTCCTTGGTTGTGCACGTTTGGAATCACTACTGTGTTGTATGGG
CCGCTGTTGAGCGAGGTACGCTTTCGCCCGGTGTAGACAAAACAAGTAGG
CCCGCCTGTAGTGTGTTGCGAACGGCTTGTCTTCATGGCTGTTCCCCTGA
CTGCTGCTCAGGTTTTTTGTGTCAACTTCCGCCGTCTTCGTGTAGATGGT
GAAGGATGCAGACTAACAATAACGGGAGCATTCGATTGCATGAAGCGTTT
TGGGGGCCCCGTGGGAGCCAGCCAACAGTTACTTGGTGCTGACGACACTA
CGAGCGTAGCCCAGCGAGGAAAAAAAAACATGTCAAGAAACCGAAATATC
TTTCATGAGACCCTTCTGTATGGAAACAGAATCTTGCAAATATATCTTGG
CATTTTGACCCAAGATTTGCTCACAATTTATCTCCGCGAAGATTTGCAGT
ATCGCGATTTATGGGGGAAACATCTTGAATGCTAAAAAAGCGGCGTGTTG
TTCCTCTCTTTCTGCTTGAAGTTGATAAAAGCACAACGGCCACCTGGTCC
ACAGAAAATGCCGAGGTGTGGCGAAAAGTGAGCATGACGCATTTGTAGAA
GGGGCGTCCCTCCCCCAGCTGTATTGCCTCAACACTGTGGGTCGATACTA
GCGATGGGCGCCTGCCTGGGGTGCAAAATAGAAGCCGTTGCCCACGAGCT
CATGTCAAGCGGAGAAACAAAATTGTTCCATTGCTGTCCAACTGACAAGA
AAGTGCATCAACCCGAGGCCGATGACACCCATGCACGTATCTCACTATGT
AGCAGGCGTACCGAGGTCAAACCTCCGGCGCTGTCATCTGCACCCACGGA
TTTTGCTCGGGTGCAAACGGGTTGGGTGTGGGGTGATTCGATGAAGAGAT
AGAAGCGTCGCACACGACAGAGCAGTGTTGGCAAAACGTTCCTCCTGCTC
TATTTTTCTACTTCGAAATATAATACTCTTTGAACGGTCCCTCGACAGAC
TGGTGATGACGCACGTGGAACGAGTCAGGGCAAATACGCAGTTTTTTCGA
CCGCCTTGGTTGTTTTCGTTCGCTGCCGGCGCCCGTGGCGCCGACACAGT
GACGCCAGGGTGCGTTAGAGACCCTTGCGAGTGTGCCACGTGCAGATTTC
ATGGCGCTATGGACGATTAGGTTGACTGACCTTCGGTGATCGCGCCGCAC
CCAGGCAAGATTTGTTACGCCGCCTTAAGATTTGTCGGAAGGATCGTTCC
GACAGATCTTGGGTCAAGATTTGTTCGAAAGGGCAGATTTCGGGCCTCGA
TAAATCTCGGCCAAGATATATCGGAAGATTTCGCTCCCATAAATCGTGAA
ACTGGCAGATCTTGGCCAAGATCAAGATTTATCGACAAGATTTCGTTCCC
ATAAATCGGGGTCTGAGCTCTATTGTTTGCAAAGGGGTACTTCGTCACGA
AGGGTGTCGTACGATTGCAAAACCACACCTCCCAACACACGAAAGTACCC
ATGATGTTTACCGCCCCCGTACGAACGACTGCTGTACCGCGCGCGCTTTC
GTTATGTTTCAATCTCACCCGGCGTGTTCGCCGTGTTTTAACTTCGACCA
TCGCCAGGATGCCGCACGAAAAATGCAGGAGCAGCGCAGCGCGCGCAAGG
GCTGGTGGTGACAACCTGGGGAGGATGGACGTTGGCGGAAAGGCTGTTGC
GGTGACGCGCGGAAACACGCTGCAGAATTACAAATTGAATATAAAGCACA
CAGCAGTATAGGATTCGGCTGGGGGAACCGGGGTTGGGTGGGGCACCAAA
GTTTTTTAAGACCTAGAAATGTCCGCTCCCGTTGCCGCTGCGACTGGAGA
ATGTTGGCTTTTGGGATATACGGCCAAGGCATGGAGGAGATATTGCGTAC
GGGTATATCTCCTTCGGGCGCTCCTCGGTCAGTCGGACGTAGCGGGTGAT
GGGGTTGCCCTGATTCAGTTGGAACACGTGCTCGCACTGCACGTGGGGCG
AGGGAGGAGACACGGTGCTCTTTGTGCTGCTTGTTGGCGCGGCGTCAGGA
GAATGCGCTTGCGGGGGGGTGGCGGGTTTGGGGTGGATGGAGGAATAGGC
AGTTGACGGAAATACGCCTCTGCTTGGATGTGGCGGAGCAAGCCCGCTTG
GGCTTTTTCGCGAGCAACGTCAGTGTTGTTGTTAGCGTCGGTGGCGGGTG
AGAAATTTCGTGGGTGTGGATTGTATGGTTCGCCTGTGCCGATTTGTATT
GTTTGAAGAGTTTCACCTCTCACATTAGCAGGTTGTCCAGGTACCTGTTT
CCCCTCGTGTTTTCAGCTTTAGTCGTTTGGTGCTGCTGCGGCAACCCTCT
GTCATGCCCTCCGTATTTATGTAAATGTAAAGTAACTATTATAGCAGTGT
GGTGCTGATTTCCTGTTGCTGGGTTTGGTACAATAGAGTGTACTGATATA
ATTGACGTGACAACCGTCTGTTCCTGTTATTAGTGTGCCTACCTGTCCAG
CGGTGGGTTGGCCGAGCTGCTTGTTTACGCGCCGCCGACGGCTGTGCGCT
GGGGCGGGGCGGTCGCGGGATGTAAGCGGGAGTTTACCTTTGGAGGGCTG
CGCGCATGGGCGTAGGCTACAGACCCATATGCGCTGATAGTTGTTCAAGA
GCCTCGCTTCTTCTTCCGTGGCTGTTGCATCGCTGTTTGTTGCTCGACGC
TTAGAAGAAAGGAGTATTCACCATGTTTCCACCTATTAGTGATCAGCGCG
TAGTCTGGTTTGCAAGACAAGACTTGTGTTCTTCTCTGCGGCAGTGAACT
TCGGCAACGAATGCTCCCCATTTTTAGGTCTTACTATGGATCGTCGGTTC
CAGTAGTAACACGCAGACGACAGGATCTTGATCGCGAGCCCTTTTCGAAG
CGTGAGAGGCTTTATGATGCAGCCATCGGGAGTTCGGTGACATGAAACCA
GTCCACGTATCAGATATTGCTCTGAAAATAACGTACACACGCATCGTACA
AACGCATCGTGCTCTAGCAACTGCTGTTTGTTCCCTCTTTTCCTGCAGGT
CTGCGTACAGCAAGTCAGCCAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1693205..1697827-

>mRNA_Ecto-sp6_S_contig9.18185.1 ID=mRNA_Ecto-sp6_S_contig9.18185.1|Name=mRNA_Ecto-sp6_S_contig9.18185.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1693205..1697827- (Ectocarpus species6 EcLAC_371)
ATGTCTGTGGAGAATGACATGCGCGCCGAAGAGCACGAGATTTCAAATCC
GGTTGAAGAGTGCAAAAAGTGGCAGAAAAAGTACTACCGGTGCGTGAAGA
AGTTCGGGCGTGGGTACATGCGGGGAGAGGCGAGGTCGGAGGAGAGAGAC
GACTGCCTGGAACGCTTCGATGACTTCCAGAAGTGTGTCCTGGATGCCGC
ACGAAAAATGCAGGAGCAGCGCAGCGCGCGCAAGGGCTGGTGGTGA
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