mRNA_Ecto-sp6_S_contig9.18183.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18183.1
Unique NamemRNA_Ecto-sp6_S_contig9.18183.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18183.1 vs. uniprot
Match: A0A6H5KLH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLH0_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 4.000e-167
Identity = 236/253 (93.28%), Postives = 243/253 (96.05%), Query Frame = 3 
Query:   93 MAELVGIGKEAAADAQDDVAVSGFHNPLFSNAVAGAPKNERLFPTTKDEEANERRKSSSMVMRRHVKKDCRQDGTLVDNTKKRVDRSQKMASERQMRRVSSLDVPACVVVKSEDASDAGEILQHCAFHMEAFRVHAKNQTVAEGAPTPTTFMFVFHGGQPNQAALEVTHTPPCPVPARGQAGDGGGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS 851
            MAEL+GIGKEA ADAQDDVAVSGFHNPLFSNAV+GAPK+ERLFPTTK EEANERRKSSSMVMRRH+KKDCRQDGTLVD TK+RVDRSQK+ SERQMRRVSSLDVPACV VKSEDASDAGEILQHCAFHMEAFRVH KNQTVA GAPTPTTFMFVFHGGQPNQA LEVTHTPPC  PARG+AGDGGGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS
Sbjct:    1 MAELIGIGKEAEADAQDDVAVSGFHNPLFSNAVSGAPKDERLFPTTKGEEANERRKSSSMVMRRHMKKDCRQDGTLVDKTKRRVDRSQKITSERQMRRVSSLDVPACVAVKSEDASDAGEILQHCAFHMEAFRVHTKNQTVAAGAPTPTTFMFVFHGGQPNQATLEVTHTPPCLTPARGKAGDGGGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLH0_9PHAE4.000e-16793.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1676734..1682305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1325
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001460.1
Cds size762
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18183.1prot_Ecto-sp6_S_contig9.18183.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1676826..1681834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.637038-UTR-Ecto-sp6_S_contig9:1676733..16768251682350534.637038-UTR-Ecto-sp6_S_contig9:1676733..1676825Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1676734..1676825 +
1682350534.6863089-UTR-Ecto-sp6_S_contig9:1681834..16823051682350534.6863089-UTR-Ecto-sp6_S_contig9:1681834..1682305Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1681835..1682305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.6453347-CDS-Ecto-sp6_S_contig9:1676825..16769471682350534.6453347-CDS-Ecto-sp6_S_contig9:1676825..1676947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1676826..1676947 +
1682350534.6529827-CDS-Ecto-sp6_S_contig9:1678936..16790621682350534.6529827-CDS-Ecto-sp6_S_contig9:1678936..1679062Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1678937..1679062 +
1682350534.6603029-CDS-Ecto-sp6_S_contig9:1679918..16800391682350534.6603029-CDS-Ecto-sp6_S_contig9:1679918..1680039Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1679919..1680039 +
1682350534.6680932-CDS-Ecto-sp6_S_contig9:1680817..16811471682350534.6680932-CDS-Ecto-sp6_S_contig9:1680817..1681147Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1680818..1681147 +
1682350534.6757936-CDS-Ecto-sp6_S_contig9:1681771..16818341682350534.6757936-CDS-Ecto-sp6_S_contig9:1681771..1681834Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1681772..1681834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18183.1

>prot_Ecto-sp6_S_contig9.18183.1 ID=prot_Ecto-sp6_S_contig9.18183.1|Name=mRNA_Ecto-sp6_S_contig9.18183.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=254bp
MAELVGIGKEAAADAQDDVAVSGFHNPLFSNAVAGAPKNERLFPTTKDEE
ANERRKSSSMVMRRHVKKDCRQDGTLVDNTKKRVDRSQKMASERQMRRVS
SLDVPACVVVKSEDASDAGEILQHCAFHMEAFRVHAKNQTVAEGAPTPTT
FMFVFHGGQPNQAALEVTHTPPCPVPARGQAGDGGGEEPDPTSEGEGRVT
MTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFT
SLS*
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mRNA from alignment at Ecto-sp6_S_contig9:1676734..1682305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18183.1 ID=mRNA_Ecto-sp6_S_contig9.18183.1|Name=mRNA_Ecto-sp6_S_contig9.18183.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5572bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1676734..1682305+ (Ectocarpus species6 EcLAC_371)
TCACAGCCCTACCCCACGAGACACGCTACGATACACACGAATCCTCTCCG
CACTACGAGGTGGTGAAGACGTGTGTGGGACGGTTGAGAAAGATGGCGGA
ATTGGTTGGTATTGGCAAGGAGGCGGCAGCGGACGCCCAGGACGATGTCG
CGGTTAGCGGGTTTCACAATCCCTTGTTTTCGAACGCTGTCGCCGGCGCT
CCGAAAAATGAGAGGTGAGTCGATTGGACGAATCCGACCCAACGCTGACC
ACCTGCGTGAAAGGAGACGTGTAACGGGCGCCTGAGACCGAAGACTGAGC
CAGGGCGTCGGTGTGAGGATGTATGCGTGCACGATGGCGACCGAATAACA
CGTGCTATGTATTCAATACATGTATGTGGGAACTTGCGAATTTGGAGTCT
GGATTATCCAGTATTGTAGACCTCATCATGTCGGTGTCCCATCATTTTCA
TCTCACCCGGCGCACCAGCAGCAGGACCTACACACTACCTAGTTGGTTCA
GGTCTCTGCGGTCTCTCTCGCGCACTCTCTTTCGCCTCGACTCCTCGTGC
TCCTCCAAAAGCAGAGCAGGTGTGTGATTCTACATGGGAGACGTCACTCA
TCAACGAGATGCAAGAGAGAGAGAGAAGCCAGCTCTCGCATCAAATATAA
TTTTTTGTATCTTGGTGTTAACGATGTTACGCGCGCGGGTCTCCCAGCGG
CACACATGCCGGGAGTATAGCAGGGAAACTGAAGGTCTAGATGAACTCTG
CATGAGGTCTAGATGAACTCTGCATGAGGTCTCGCATGGGGTCCGAAACA
AGGCAGACGGGCTTGATGGGTTTTTCTCCGGAGCGTACATGTAGACACGT
TCGTTCGATGTTGCCGGAATGAATGATGGATTGATTGTGGAGGACCGGTG
GGCGGCCTCGTTCTTTTCACCTTGTTCAATAGCAGCGTGAAGGCTGGGTT
CCCAAAACCTGTACCATGGTGTACGATATTCTCCGCCGGGGTACATGAAA
ATAACCCCCTGCCGCTGAGGACACTAAGGTGTATGATAGCCTATGATCGA
GGGTGGACCAATCTAGCTGGACCCAGTTCGTTCGGTGGAATGGCCCTCTG
TTGTTTGCGCCGTGTCGTCTGTACAGGATTGTAGGAGCAAGCACTTAACA
TTTGGGTCCAAGCGTGTCGAAACCTGGTAACCCGAACCCCGACACTCAAT
ACCAAAACCGTTGATAACCCAGAGAAGCAAGAACGCGAGGGTGGCACAAA
AATACAATGGTGGCGTCCGTATGTACGAACGTGCACAGTCACTTACCACA
AGAATACACACCTGGTGGTGTCCAACGTTTTGAATCGTACCAGCAACTTG
GAGTATTGTGTGGGCGAGTGAGCTATTTCGCGTGCCCCTTTTTATTTGAT
CTGCCAATTGGTTTTTGTTTTGGACCCATGTTGACCCGTGAAAGTCTTTC
CACCTGGTGTGGTATTGTTTGTGCTTGTCAGGTGTTTTGTCTTCGGGGTG
TTATCTTGTGCCGTACACAGTATGCAGATATGGGCGTACGCATGGTGTGG
AATATTCTCTATATATCTCTGCGTAATGAGCCACTGTTCGTGATGACGGC
AAACAAACGCCCTGCTTCGATGCCCCCGTGGACACAGATGGTTTCACGAA
CCGCATCACACGTGCATTGCTCTCCATCTGCTGCTACCGTTTGTGTCTTT
ACTCCGGAGAACGGCCTATAGCCTCGCGCATTACCCCCCCTCGCGGGGTC
CCAGACCATGCCCTCTTAAAACGTACTCAGTTTTTAGCCCCACTGACCTT
GACATATTGTTGTTCGGCAGCCAGTTAGCGCAGTCGATGCTATCAGTAAA
GACACCCTGGTGCCTTCTTCTTGGTCGGCCGTTTAGCGCGGTCAATGCTA
GCAAACACCCACAGACACCATCACAGGACCCCAGATCTTAGCCTTTGAAG
CGTTTTGCTACCCCACGATAAGACTGACATATGCATACTATCATTGGTCA
GCAAGTTGGCGTGGTCGAAGAAGATACCGGGAGCGAGAGCGGTGGCGTTT
TGGTGCCCCGATACGACTGGCCCCTTGGCGTACCGTCCTCAATCGAACCC
CCACCGCGCCCTCCATCCCTTTGCGCGGCGTGTTTTCTGCTGCTGCTGCT
GCTGCTGCTGCTGGCCGTTTTTTTGTCTGGATGCCCCTCGTGGGTGTCGG
AAGGCTTTTCCCCACCACCAAGGACGAGGAAGCGAACGAGCGCAGGAAGT
CCTCGAGCATGGTCATGCGGCGGCACGTGAAGAAGGACTGCCGACAGGAC
GGCACGCTGGTCGACAACACCAAAAAGCGGTGAGTTAATATGGTAGGATC
TGTAGGGCAGCATACACCTACCAGTAGTCCTCCGTGCGCGATGTCGCTCA
TGTGCGATGTCGCTCGTGTGCGATGTCGCTCGACGGGCACAGTAGTAGAC
TAGTCTCTTTCGTGATGTGATGTGTTTCTCTGTTGCAAGATTTTTAGAGT
TGTGTACCCTGTTTGCTGTAGTTGGCCTGTGTCTACAGAAGGAATCTTCG
TCAGTTGAACGAGCAGAGGCTGGAACGGTTTTCTGTGTGAAGACACCAAC
AACAACATCATCATCAACATCATCATCATCGACCACAACAACAATACTAG
TGAGGAGGGGTCCTGATACCGCTGTCTCGAAACGTGCCTCCTAAGCGGAA
GGGCATATTTTGTCGGTACAGCGCGTGCGTCATCGCTCACCTCTTTCTTG
GTTCCGGCCACAGCACCAGCGTTTTCTCAGGAACTCGGGGTTAGGTCGAG
CGCCACACGCATGCACGGTTGTGTGGATTTTGCAAGAGTGTGTCCAATAT
TCCAGCGACCGCAACCGTTGATACACTCCAGCGACTTCGATACGTCTTCC
CACGAATGATCTTAGAAATTGCAGGTTGTGGCCAACACGCACGCGCTCGA
AAAAATCCTAGCGGGACTCGCTTAGAGGAAACAGTTTGTTTCCGTCTGAG
GGAGGAAGGGAGGGAGGGAGGGAGGGGGTGTGCGAGCGAACATGCTGTCC
ACGTTCTTTCACTTCGTTGCAAGGCTTCGTTGCAAGGCTTCGTTGCAAGG
ATGTTTTTTCGGCGTCGTTGAGCACAGCTTCGTCAACTGTCGGGTACGTC
ATTCGTGTGCCTCGTCCAATGGTTCGTGCCTACAGGGTGGATCGGTCACA
GAAGATGGCCAGCGAGAGACAAATGAGGAGGGTCAGCTCCCTGGACGTGC
CGGCGTGCGTCGTGGTGAAGTCGGAAGACGCTTCCGACGCTGGGGAGATT
CTGCAAGTGTGTGTGTGTGTGTGTATTTTTTTTTAACTAGCATTGGCCGC
GCCAACCGGCTGACCAATGAAAAACGTCAGTGCCAACGGTGCGTGTGTGT
GTTTGTGCGTGTGTTTTTTCGTGTTGTTCTTTGAGGAGGATCGACCGCAC
CAACCGGGTGACCAATGAAACATATGGCATGAGCGAACGGGGCAACCATG
TGGTTATTGGGTTATGTGTGCGTGTATGGAAGAGAAACAGCCAAGAGAGA
GGAACAGAGGAGGGAGAGAGAGAGACAGAGAAAATTGGTGGTTGTCGATA
CAAAGAGGCGACCGTCTCCTGCCCGCACGTAGATGAGTTACGTGTGGTTA
TTTGTCAAAGCCCGCGCGTGCTGTTGTCAACTTTTACTTCCGACTGGGGC
CCTGTTGCGAAACAAGTCTGTCCTCCCGTCGTTGGAAGTTGGTTCGTGCA
GACGGCTGCTGCCGTAGCGGGGAAGTCGAGGGTATGAGCGGGTTCGAGCA
AAGACCGTAAAGCCCTGAACCGATGCAGTCGCGGCCGCCTTGGTCCGCGT
GTGTCGAGAGCAACCCCCTCCTCCTGCTTCTCGTCGCCGGGCGGGGTACG
CACCCAGGCGCAGGGTTGTGGCACGAACTTCCGAGTACGTTCGCGCCGTG
CACCAGTCCCACAACAGCCATCTCGCCTGTGTCGCCTTCAAGACACCATG
GTGGCCTTTCCACCCTTAACAACTTTCTCCTCTCCGCCGCCGCCGCCGAC
CCGCGAAAAAACACCCGCCCATCGTCAACAACAGCACTGCGCGTTTCACA
TGGAGGCCTTCCGGGTGCACGCCAAGAACCAGACGGTGGCAGAAGGAGCG
CCGACACCGACGACCTTCATGTTCGTGTTCCACGGGGGGCAGCCCAACCA
AGCGGCCCTCGAGGTCACGCACACGCCGCCTTGCCCGGTCCCCGCGAGGG
GGCAGGCGGGGGACGGCGGAGGAGAGGAGCCAGACCCTACCAGCGAAGGA
GAGGGTCGCGTCACGATGACCCTGGGCGGGAACAACGTCCCGCACCGCCC
GGGCGAGCCGTACTCGTGCTACATCCGCCAGGTCGGACACGTCACCTTCA
ACCCGCGCAAACAGGTGAGGGGGGGGGCGCTCCTTTTGCTGCGCAGCTGG
AGTGACTAAATACTGGCCACCACTTGCTCTCTGTTGTAGGGGGTCGTCAA
GTGTCACTTTCAGCCCGCGCGTGGTAGTGTCCACAACGGGAGACGGCTAC
ATTGGTTCGGTGGATTGGCTTTCCCTAAACCCACAAACCACGGTAGGCTT
CTCCTGGGTTAATACTTCACGCCCCCAAATGAACAAATAAGCGCGCCACC
GTTCCTCCAAAGACACCAAAGCACGAACACAGCAGCGTGGCGCGGTGAAA
TTCTACCCGTTCGCCTGACCTGCGCCGTTTGATCCTTCTATCGACTTCGG
TGACGAGCCACGTGTGCAGTTGACACCACCATTCACCTCATTTCACCTTC
CTCTGCCGGTAGGTGCTGGCTCTGCATGCTAGGCTGGTCGAGTGGCCTAC
TGCTGTACCAGTTGACGGGGCAAAACAAACCACAATTTAGGTGTTCACAA
CTCAAAGTCTTCCATTCAGCTGCAGATAAAATGTTATTGAAGTATTTTCG
AACATTGCTGTGGTTAACGATCTACGAAAAACATTTGTGAGCTGATGCTA
ACTTTTCTTGACATCCCTCCACCCGATGAACCCCTCAGGCACGTGGCTAC
CTGTACATCCTTAGCCAAGAAGGACGTACTCTGTTCACCTCGCTCAGCTG
AGCATTGCCCCGGCGGCAAGCAGCAGAGATGGGGGGGTTGACAAGGAACA
GTTCTCCCCACCCCCACCCCGTGATGTCGCGCACATAATGTTGCATCGGC
GAAACAGCCCTCGTGGCGTCGGTAGCGGAAAAGCGCCGGTATCTACGCGG
CGGGTCCCGGTGCGCTCGATGCTGGGCTCAGATTGTTTCTCGTTCTTTGG
TTTCTTGCCTCTTGACTGGTAGATGGGATTGTTATTGTAGCACAGTTTTG
GGTTCGAAGGCACAAGGTCTGGTTTCGACTCTCTGTTGGGTCTTGTTTTC
GCGGCGTCAAGGACGTCGTGTGTTTCGTTACGACCAGGGGTCATGGACGC
ACGAGACACAAGAAAAGAGTGTTGGTTTCGCGAGCGGGTTCTGATATTTG
CAATCCACGAACGACAGGGCGAAGACGGGAGCGCGCATGCAGCAGCGCAT
GCTGTGCGGCGGCAGTTTTGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1676734..1682305+

>mRNA_Ecto-sp6_S_contig9.18183.1 ID=mRNA_Ecto-sp6_S_contig9.18183.1|Name=mRNA_Ecto-sp6_S_contig9.18183.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1676734..1682305+ (Ectocarpus species6 EcLAC_371)
ATGGCGGAATTGGTTGGTATTGGCAAGGAGGCGGCAGCGGACGCCCAGGA
CGATGTCGCGGTTAGCGGGTTTCACAATCCCTTGTTTTCGAACGCTGTCG
CCGGCGCTCCGAAAAATGAGAGGCTTTTCCCCACCACCAAGGACGAGGAA
GCGAACGAGCGCAGGAAGTCCTCGAGCATGGTCATGCGGCGGCACGTGAA
GAAGGACTGCCGACAGGACGGCACGCTGGTCGACAACACCAAAAAGCGGG
TGGATCGGTCACAGAAGATGGCCAGCGAGAGACAAATGAGGAGGGTCAGC
TCCCTGGACGTGCCGGCGTGCGTCGTGGTGAAGTCGGAAGACGCTTCCGA
CGCTGGGGAGATTCTGCAACACTGCGCGTTTCACATGGAGGCCTTCCGGG
TGCACGCCAAGAACCAGACGGTGGCAGAAGGAGCGCCGACACCGACGACC
TTCATGTTCGTGTTCCACGGGGGGCAGCCCAACCAAGCGGCCCTCGAGGT
CACGCACACGCCGCCTTGCCCGGTCCCCGCGAGGGGGCAGGCGGGGGACG
GCGGAGGAGAGGAGCCAGACCCTACCAGCGAAGGAGAGGGTCGCGTCACG
ATGACCCTGGGCGGGAACAACGTCCCGCACCGCCCGGGCGAGCCGTACTC
GTGCTACATCCGCCAGGTCGGACACGTCACCTTCAACCCGCGCAAACAGG
CACGTGGCTACCTGTACATCCTTAGCCAAGAAGGACGTACTCTGTTCACC
TCGCTCAGCTGA
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