mRNA_Ecto-sp6_S_contig9.18181.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18181.1
Unique NamemRNA_Ecto-sp6_S_contig9.18181.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18181.1 vs. uniprot
Match: D8LGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY2_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 3.070e-151
Identity = 240/253 (94.86%), Postives = 241/253 (95.26%), Query Frame = 1 
Query:    1 MAAAKRPTSEEAVVPLVEVMAELEQQSPLPDSGCVQQHQQPPGFAAVEGVPVARATMRPFAYVGVPIDDDNHNELRRPSPAAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPEDTTPLGNKERDYGAGGXXXXXXXXXXXXXXXXAVGGESAAGKGCEQEASGGGYQCSEYVPAEYDIPDYKSVYERPSGK 759
            MAAAKRPT+EEAV PLVEVM ELEQQSPLPDSGCVQQHQQPPGFAAVEGVPVARATMRPFAYVGVPIDDDNHNELRRPS AAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPED TPLG KERDYGAGGXXXXXXXXXXX     AVG ESAAGKGCEQEASGGGYQ SEYVPAEYDIPDYKSVYERPSGK
Sbjct:    1 MAAAKRPTTEEAVAPLVEVMGELEQQSPLPDSGCVQQHQQPPGFAAVEGVPVARATMRPFAYVGVPIDDDNHNELRRPSTAAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPEDATPLGEKERDYGAGGXXXXXXXXXXXGKEAAAVGEESAAGKGCEQEASGGGYQFSEYVPAEYDIPDYKSVYERPSGK 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY2_ECTSI3.070e-15194.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1659613..1666290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size811
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001480.1
Cds size762
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.496202-UTR-Ecto-sp6_S_contig9:1659612..16596611682350534.496202-UTR-Ecto-sp6_S_contig9:1659612..1659661Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1659613..1659661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350534.5075047-CDS-Ecto-sp6_S_contig9:1659661..16599421682350534.5075047-CDS-Ecto-sp6_S_contig9:1659661..1659942Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1659662..1659942 -
1682350534.516078-CDS-Ecto-sp6_S_contig9:1660225..16603171682350534.516078-CDS-Ecto-sp6_S_contig9:1660225..1660317Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1660226..1660317 -
1682350534.5239954-CDS-Ecto-sp6_S_contig9:1662829..16631491682350534.5239954-CDS-Ecto-sp6_S_contig9:1662829..1663149Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1662830..1663149 -
1682350534.5317729-CDS-Ecto-sp6_S_contig9:1666221..16662901682350534.5317729-CDS-Ecto-sp6_S_contig9:1666221..1666290Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1666222..1666290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18181.1prot_Ecto-sp6_S_contig9.18181.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1659662..1666290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18181.1

>prot_Ecto-sp6_S_contig9.18181.1 ID=prot_Ecto-sp6_S_contig9.18181.1|Name=mRNA_Ecto-sp6_S_contig9.18181.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=254bp
MAAAKRPTSEEAVVPLVEVMAELEQQSPLPDSGCVQQHQQPPGFAAVEGV
PVARATMRPFAYVGVPIDDDNHNELRRPSPAAASYDNSRAGAGRVHGDVS
VGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETA
RINAKRRDAEGLDMRPHPGNRLEPEDTTPLGNKERDYGAGGGGYGGGVQE
SSGKEAAAVGGESAAGKGCEQEASGGGYQCSEYVPAEYDIPDYKSVYERP
SGK*
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mRNA from alignment at Ecto-sp6_S_contig9:1659613..1666290-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18181.1 ID=mRNA_Ecto-sp6_S_contig9.18181.1|Name=mRNA_Ecto-sp6_S_contig9.18181.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6678bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1659613..1666290- (Ectocarpus species6 EcLAC_371)
ATGGCCGCGGCGAAAAGACCAACTAGCGAAGAAGCGGTGGTTCCGCTGGT
GGAGGTCATGGCGGAACTGGTGCGAAAAATATGTGATTTCTAAAGAGCAG
TGTTCATGTGTTTCGCAAAGAGTGCCCTCTTCTGTTGCGGAGCAAGCTTC
GCCTATCGTGCATGACACACGGCAGAGAGCGGTAGACGCGGCTACCTGCA
GTATACGTGTGCAGTATACGTGTGTACAGCATGGTGGCAATACTGGTGTG
CTGTGTGTGATTATTTTTGTCTCTTTATTTATCGCCGCTCTTTGCCGATG
GTATACTGCTGTGGCTGGCAGCTTCTTCAACCCCCCCCATAATGCCCTCT
GACGCCGGGTTAGTCGAGAACACACAGCACACCGCTCACGTGTTCAAAGT
TCAAGGGCAACGTTTGTAGAGCGTGCATATTGATGGTTCGGCACGCCAGT
CCGGCAAATCCTTCTATTCCGACACAGTTATTGTGGAAACGTACCTTGAG
CCTTTTCAAGCGTACTCATTTGGTGCCTGCTGTGTGATCCAGCTCCCCGT
TGTGGTCATACTCTTTTCGATGCAAGACAATATCGCACCCTCGATGTCTT
ACTGCCGTCTACCCTTGCATAGCCAGCATCGACCTGTGAGTACGCACTAC
ACGTAGAAATGACTTTGCAGCGCAATTTAACACGAGCATTTCTGTGAGCA
TGACATGGCGCCGACATTCGTTGTTTAGTCTACATACAGCAGCATGACGG
AATCGCTTGTCACACTGGCCCCCTTTAGCTGTTGCTTTTACTTTTGTAAA
TATGGCTGTCTGCCCATCTGCCGCCTCTTTGTTCTGTTGCCTCCATTACT
CCCATGCCCTGGTGCGTAGTGCCTGATGCTGGTACGGTACCCTTTGAGTT
TTTTAGGCGGGTATGGGAAGCGTCCTCATTTTTCCCTTGTTATTTTTGCC
TTTATTTTTGTGTTGTTTTATTTTTATCGGTCTCCTAGGGCTCCTTTCTC
GACCGGTCGGTGCGGTAGCTGTTGTTTTCTTTCTATCATTTGGTTTTCTT
TTTCCGAGTGGTTTGTACTCTGTTCTTATTTTGTTTCCCCGCGGCGTCGT
ATGTGCCGGGTTTTGCGATCGCGGGCTCCCCATTTTTGTGGACTATTGAG
CTAATGTGAAAAACAACAACAACAACAACAACAACTGGCGTCAACAAGGC
CCTCCTGCATGTACAAGCTACCGTATCGTATGTAACGATTACAACAGAAC
GCAAAGAGAACGGCAAATTGCAGATGTTGATGCGGTCCGCCGGCTTTTTC
ACGGGCAACGTGAGTCAGGAAATTTTCCGAGGTGCTGAGTTCACGAGAAC
GCCTAAGGGGTGGTTAGGGTGCATGGCAGAGAACGATCGAACCGGATGTA
GATTACCAATAACAGTCAACTGCCGTCAGAATGAACAACGTGAAAATGTC
CCAAAAATGAATGCCGCACACCCGTCTCTCGTGTGACTCCGGCTGACACA
TATATACGCCAAACATACAAGGGCGCCGGACGCGGGGGGTATGCTATCCG
TCCCCCGTCTTCCGTTGAATGGTGATGGGCGGAGGTGATTGCGGATCAAG
TAGTACGCTCGTAGCATAGGCCACACTGCGATATGTCAACGGGTGATGTC
ACAGCACCGTTGTTGTTGCGCCGCTGGCCGTTGTTGAAACGCTCGCGAAC
CAACGACGGACAGAGCCTGTTGGCACGGAGATGTTTGCCTCAGAGATTTG
AGGCGGTATAGCGATGGTTGAAGAAAATTGCCAAATACCGGTGGGCGAAG
GTTGAAAATGTCGCCCGTAAGGCAGTGTGCCCCGTGCGTATTGGTTCCCT
ACGTGAACGAAGCAGGGGTTGAGCAAGCAAAACCTAAACGCTGCTCGCTC
ATGTAGCAACTGCTGTGAGGGTTTGCAACAGCACGAAACGCCGCACCGTT
AGCAGACTTTTTAAAGAAACAGCCGTCATCTCCCTATCAACGTAAACTGC
GTTAACTTCTGCACACACGCACACACAGATACGGCAATGCAGAGAAACCA
GAACAAAAAAAGTGTGCGACGTGTCTCTGTGTGCAGTTAGATGCGCGTTT
CCTCAACACGTCTGCGAGGTAGGGATTGGTTAACACCACACACGACAGAG
CAATAGCGGCAGAGCTGGTAGACGTTGACCCGACTTTTGCGATATCGACT
TCAACATGAGGGTCGCTCACCTCCGCGGCAGTTTCTCACGTTGTGCACGT
AGTGAGGAGGTGTGTGCGCGTGTGTAATGTGGACCTTGGTGATGCAGCTA
CGCGTTTCACACGACAGCGGAGTACACCAGTACTCTCGCAGCGACAGAGG
GGGTACCTGTAAGCCCTACAGGCAGGCGCGCTACCGATTGCACTGACAAC
ATAGTCTCGCGTCAGGAATCATGACTCATGAATCGACGTTCTCTGCCAAA
AGCTCGCCGAACGAGAGTCGCGAGTCTGAATATATTCAACACTCCAGCAT
CATCCTCCCAGATGCAGATGCGCAGTCAGAGACTGAAGAGTAATTCACGG
TGCCTGTAACTCGGGTCACTCGTCGAGTCTCGAGCTCGCGGCAGGGGGAG
TTGAGAAGGGGAAACTTTCCTCGCCCGCGTCGCGAAGAGCAAAAAGTGCG
GTCAGAGAGTTTGTGTGCGGGCGAGCGGCAGGGTCGAACAAACCATTTTG
AATTGAGGGAGGTGGGATAACCTCCCTGCGCTCCTAGCGCTGCGCTCTAG
GCGCTCCACAGTTGGAAGAGCCTAGAGACCAACCTTTAGTTAGGTCTATT
CCGAGAAATGTAGGCTGGCGCCAGAACAGACGAGACGAGAACACAAACAT
ACCTCAAAGAGGAGGGACACCAGGCCCGTATGTTGTAGCAGAAAAAAGAG
AGAGCCTATTATAGCACAAGCTAAGCGCAACCCAGGACACATGTCCTTGT
CCGCGCGGGTCCTTCCGCAAGGGGTCAAGACCACCGGGAAGTCGCCTCCT
TGCACACACCAAAGCCACGACAAACGCGCTGGAACATGAGGTCACACAAT
GTCCGCGTCCACCACCATCCCTCTCCCGATGTAGCACTGACATTCCTCTT
CAACACGCGTCTCGGAAAACACCTGAATATACAAAACGCAGGAGCAACAG
TCGCCTCTCCCTGACAGCGGGTGCGTGCAGCAACACCAACAGCCGCCGGG
CTTCGCAGCAGTGGAAGGAGTGCCCGTGGCCCGCGCTACCATGCGGCCTT
TCGCGTACGTGGGCGTCCCCATCGACGACGACAACCACAACGAGCTGCGG
CGGCCCTCTCCCGCCGCAGCGAGCTACGATAATTCCCGCGCTGGGGCGGG
CAGAGTCCACGGCGACGTGAGCGTGGGGGTGGGGGCGGATTACGACGGGG
CGGCGGAAGCCGCCAAAGCGAGCGCCAGGAGAGACAACGCGGCGTTCTTC
GAGAAAAAAAGGTGAATCGATTGTGGGGGGTCGCCATGGGTATGGCCTGC
GGCAAGCAGTACGCGGGGGGCTACACATGGTGGTGTCGCACCAATCAAAA
CGCCGCGACGATGAGCGCATCTCTCCTCGGCGGCGGGGAATGAATGGAGC
ACTGCTGTCGTCAGGACCAAAAAAACGGACGTATATAGTTGTACGTTGGA
GGCCTTTACTCTCGAGGAGGCTTGAAGATGGAAGGAAGACAAACGCGACA
AGCGGGTTTATTGTGCGGACCCCGAGTTTCCCGCAAGGTCCACCTACAGC
TGAGGCTTTCACCGGCATGCAACACCGTGCAACCACCAAGATGGTACAAG
TATGGTGGTGTTCCTGAGAGACACCAACCATAGTTGTACCATCCGGCCCG
TACTTGTGCCGTCTGGCTTACAATCGGTGATTGCATGGAATTACATGCCG
GATAAAGCCTCAGCTGTCGGTGGACCTTGTGGAAAATTCGGGGTCCGCGT
AAGAACCCCGCTTCTTGCGTTTCCTTCGTACGCTCTCATCCTTTTCATGT
GTGGACTACCGTAAGAATGCGGGTCTTCGCACACTGCTGTGCGGTCGTAG
TTTTAAATGTTTTTTTTCTCGGTTTTTCTATCGCACAGGGGTGCCAAGAC
GCCGATACGTACCGTGTACAATGCCCGATGCCTGTGCGGAACATGAATTA
AGTGTTGAGTCCTGAAAATATAACTCACACCCCGTGCGATGACTCCGATC
CGTACGATTCTGAGTAAATTCAACTCGGCGATGTGGGGTGTTTTGAACGC
GCACCCCCGTGCCAAGACTCCGGTGTGTGCGATCCTGAACAAACCACAGC
AGACACACACCAAAACTTCGTGTGCAGTATTGCAGCATCAGGACCACAAC
ATAACGAACACCGACACAACAGCACAGAATATCACACACAAACCGCACGC
GGCGAAATAAAATGCGGCGAAATGAAAATCCGAGGCGGCGAGGCGGTGAA
TTACCTTGAAATTCCCCCGACAGGGAGGTGTGTGCTCACACACGCACCAC
ACACAAGCAACACGTTGGCTACGATGTCAGGGTGCAAGCGCGTATTGTTC
TCTGGCATTCTCCCTGTGTTTTTCGTAGTACCACCGTTGTTGGTTGTGGT
CGATTGGTCTCGGGTGGTTTGTACGCGTACTTGGTTAATTGAGTAGGATA
CCGTTTTTGCCGATTCCGACAACATTAACAATGTTCAACATCACTTGCGC
ATGAAAAGACTCCACCACATCCCGTTCGACTGTGGGTCTACCTCGAATGG
GTAGTCTTTCTGTGTGTGTTTTTTATTATTCCTTGCTGAGCAACGTTACG
ATACCAAAGAACGACAGTGGAGCCCCATGATACAAGCTACCTTGGTACAG
AGTAGTGGCCCGCGACAATAGCTGGATACAACCACTCGTGGAATCAAGCT
GGCCGGAAGGTGTCGGGGTCTCCGCACACCCCGGTGCGAAGTGAACGATA
CCTGTGCGATAATCAATTAAATCTCTTGGAACCCGATTTTGTCCGCTTTC
GTCGCTTGTCAACGACGTTGTAAAGCAAGCCAATTCACTTCGTGAACTCG
GCAACCAGGTTACCGGGGGTTTTTTGCCTCTGTTTTTTTTTTTGCGGTAA
CCATGAATGTTGGTCAAGTAGATTATGCTGTGCGGGGTCGAGAACCCTCA
CTCCGCGCAACGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGC
ATCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGC
ACCAGAAAATAAATTGAGTCATACGCAGCTGTCATCCGTACGCAAGGAAG
TAAGCACAAGATGCCGAACACCATTAGCAGGATACAGGGTACCCTTCATG
CGAGTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGATGTGAGAGCGT
GGTCCGGTGAGAACCTGGCGTGCTCCGTCCCAGCTTTGTAGGGATGCGAG
GTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCCC
CTGTGCCAAGACCGCGGCCTGTGCGATGTAGCCGATCTGTGCGAAGATCG
TCATTCTTGCGGTATTCTCAGCGACACTGCTTAGAATGTATGTACTTTAT
GCATTACCGCCCATGATTATTTCTCCCAAGCTACGAATGCGGTTCTTGTG
GACGGATTTGTATTTTTTTACTCAAATGAACGTTGGTGAACGATGCTTTT
TTACGCTTGCGTCTCTCACTTTCTCTTACTCACGAGTGAACGTAGGGTTT
ATTGGAACGCTTCGTCTCTCGCTTTTTCTAAACTCACGTGGACGTTAGCA
TTGGAGTTTTTATGGTGCATTAAACCTGGCTGACTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTTTCCCGCCCCTC
TCCCCTCCCCCACCCCTCCTGTTTGTGCCGCCGATTTGGATCGAAACCTC
GTCCACGCCCCGGTTAACGAAAGGTTCACAGAGGCGCAAGCGAAATCGCG
AGTGGAAGAGGACCTCCGGGCGATCGAGACTGCGCGCATCAACGCCAAGC
GACGGGACGCGGAAGGTGTTACGGGGGTCGGGAAAAAGCGGCGAAACTCC
TGCCCTATACGTATCTCCCTTCTTCTCTTGGCCGCCTGCGGTATTTCACC
CGCTTGTATCTCCCTCTCGCTTAGTGCTCACTCTCCCGCTGCTAGGTATC
CTCTCCATCGATTGGGGTTGTTTGTTTTTTGCTGTAAGGGTTCGACCATG
CCTCTCTCCTCCCCGTGGCTAAGTGTACCCTCTGATACATGTACCCATGA
ACAACTCTTTTTTTTTTTTTTTTTTTGCGTGATCGTTTCCTGGTGAAGGA
CTCGACATGCGCCCTCACCCGGGCAACCGCCTCGAGCCCGAAGACACGAC
TCCGCTTGGAAACAAGGAGCGGGACTACGGAGCGGGTGGCGGGGGTTATG
GCGGCGGTGTGCAAGAATCGAGCGGGAAGGAAGCGGCGGCGGTAGGGGGG
GAGTCGGCAGCTGGGAAGGGCTGTGAGCAGGAGGCATCGGGTGGGGGGTA
CCAGTGCTCCGAGTACGTGCCAGCGGAGTATGACATCCCAGACTACAAGT
CCGTTTACGAGAGGCCCTCTGGGAAATAGGGTGGGAAAGGGGTCGAACGT
CTGATCGGGGGGGGGGGAACTACAAATT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1659613..1666290-

>mRNA_Ecto-sp6_S_contig9.18181.1 ID=mRNA_Ecto-sp6_S_contig9.18181.1|Name=mRNA_Ecto-sp6_S_contig9.18181.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1659613..1666290- (Ectocarpus species6 EcLAC_371)
ATGGCCGCGGCGAAAAGACCAACTAGCGAAGAAGCGGTGGTTCCGCTGGT
GGAGGTCATGGCGGAACTGGAGCAACAGTCGCCTCTCCCTGACAGCGGGT
GCGTGCAGCAACACCAACAGCCGCCGGGCTTCGCAGCAGTGGAAGGAGTG
CCCGTGGCCCGCGCTACCATGCGGCCTTTCGCGTACGTGGGCGTCCCCAT
CGACGACGACAACCACAACGAGCTGCGGCGGCCCTCTCCCGCCGCAGCGA
GCTACGATAATTCCCGCGCTGGGGCGGGCAGAGTCCACGGCGACGTGAGC
GTGGGGGTGGGGGCGGATTACGACGGGGCGGCGGAAGCCGCCAAAGCGAG
CGCCAGGAGAGACAACGCGGCGTTCTTCGAGAAAAAAAGGTTCACAGAGG
CGCAAGCGAAATCGCGAGTGGAAGAGGACCTCCGGGCGATCGAGACTGCG
CGCATCAACGCCAAGCGACGGGACGCGGAAGGACTCGACATGCGCCCTCA
CCCGGGCAACCGCCTCGAGCCCGAAGACACGACTCCGCTTGGAAACAAGG
AGCGGGACTACGGAGCGGGTGGCGGGGGTTATGGCGGCGGTGTGCAAGAA
TCGAGCGGGAAGGAAGCGGCGGCGGTAGGGGGGGAGTCGGCAGCTGGGAA
GGGCTGTGAGCAGGAGGCATCGGGTGGGGGGTACCAGTGCTCCGAGTACG
TGCCAGCGGAGTATGACATCCCAGACTACAAGTCCGTTTACGAGAGGCCC
TCTGGGAAATAG
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