prot_Ecto-sp6_S_contig9.18180.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig9.18180.1
Unique Nameprot_Ecto-sp6_S_contig9.18180.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length592
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18180.1 vs. uniprot
Match: D8LGY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY1_ECTSI)

HSP 1 Score: 883 bits (2282), Expect = 0.000e+0
Identity = 502/572 (87.76%), Postives = 509/572 (88.99%), Query Frame = 0
Query:   20 MVGTSARVRVWRTTRPLLVFLLLCSLPRSLSLPRSTAAASAQRWTLPQSSVNLRDQTRSNLRNGNRPRRSARSHSESALPTRRAHRHQQSRSTNTXXXXXXNRNRRPKGDIRINGRGSKPTVPRSSRARTKNTKTAPNASVTSSITLDGEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGXXXXXXXDVAAGASPPSRTRRPGRIGRAKARLKRSRRSGAHGLVSTGGACRYLVSPGGWCEATSVGKATVHVVAGALASSHSVVAGFVVGLAVWATCAKRLTGADDDWKQVARITIEVAVMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGAFIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGATGAXXXXXXXXXXXKAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN 591
            MVGTSARVRVWRTTR LLVFLLLCSLPRSLSLPRSTAAA+AQRWTLPQSSVNLRDQTRSNLRNGNRPRRSARSHSESALPTRRAHRHQQSRSTNT      NR+RRPKGDIRINGRGSKPTVPRSSRARTKNTKTAPNASVTSS         XXXX             XXX                       GPG       DVAAGASPPSRTRRPGRIGRAKARLKRSRRSGAHGLVSTG ACR LV+PGGWCEATSVGKATVHVVAGALASSHSVVAGFVVGLAVWA+CAKRLTGA+DDWKQVARITIEVA+MWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQG FIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGAT AXXXXXXXXXXX+AHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN
Sbjct:    1 MVGTSARVRVWRTTRLLLVFLLLCSLPRSLSLPRSTAAAAAQRWTLPQSSVNLRDQTRSNLRNGNRPRRSARSHSESALPTRRAHRHQQSRSTNTDSRRPINRDRRPKGDIRINGRGSKPTVPRSSRARTKNTKTAPNASVTSSX-XXXXXXXXXXXSFWHRQQRTSADAXXXTRTDRHRAATADRIPPTTASRRFGPGACARRRRDVAAGASPPSRTRRPGRIGRAKARLKRSRRSGAHGLVSTG-ACRSLVAPGGWCEATSVGKATVHVVAGALASSHSVVAGFVVGLAVWASCAKRLTGAEDDWKQVARITIEVAIMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGTFIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGAT-AXXXXXXXXXXXEAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN 569          
BLAST of mRNA_Ecto-sp6_S_contig9.18180.1 vs. uniprot
Match: A0A835ZF00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF00_9STRA)

HSP 1 Score: 255 bits (652), Expect = 4.890e-72
Identity = 142/289 (49.13%), Postives = 179/289 (61.94%), Query Frame = 0
Query:  295 LASSHSVVAGFVVGLAVWATCAKRLTGADDDWKQVARITIEVAVMWYCHALPHGLGAGRPLRGNFGTGKAGDLLGAMWHFLGQGAFIRLVAASGRVVSLNVLEANGILLGLSHLGNGLAGSRMRRVVGATGAXXXXXXXXXXXKAHAYQLRGFFSRTNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMCMEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYV 583
            LAS+  ++A  VVG AV  +CA     A + W+Q AR+T+EVA++ Y H LP GLG    LR +    +   L GA  H+ GQ      VAA+ R V LN+ EAN +LLG SH+GN  AGSR+  +    G+            A  YQLRGFF RT G+F  R +LS+PFD  DT+L  QGILSATERE+      +  AFR +A    + LDAHSLG +GARNL GMG +AA VR+F RP +SLGWT   +++CM GDPICGS L KLLDPTC +L G GH Y  Y+
Sbjct:  477 LASASPLLASVVVGAAVCVSCA----AAGEHWQQAARVTVEVAILRYLHCLPCGLGVAAELREHTCARQLQPLAGAALHYAGQRGCAVAVAAAARRVRLNLFEANALLLGASHVGNACAGSRLWCLDLGGGSDD----------AVGYQLRGFFCRTRGVFAARRVLSLPFDCVDTVLGCQGILSATERELACTTSAVGEAFRAWAGAPLSVLDAHSLGTLGARNLKGMGLVAAPVRLFARPFMSLGWTHGTSSICMVGDPICGSFLAKLLDPTCCLLPGSGHIYSKYL 751          
BLAST of mRNA_Ecto-sp6_S_contig9.18180.1 vs. uniprot
Match: A0A7S1XTN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTN3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.170e-13
Identity = 63/162 (38.89%), Postives = 81/162 (50.00%), Query Frame = 0
Query:  402 LLGLSHLGNGLAGSRMRRVVGATGAXXXXXXXXXXXKAHAYQLRGFFSRTNGIFGER--------------PILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFAAQSANTLDAHSLGAVGARNLMGMGFIAA---RVRMFGRPALSLGWTEKA 546
            LL  S +GN   G R+RR   ATG                ++LRGFF R  GI  E                +LS+PFD AD LL LQGILSATE +V++    LA   R    + A  + AHSLGA+GARNL   G +A    R+ +  +P +S+GW   A
Sbjct:    2 LLATSFVGNLCVGGRLRR--DATGEH--------------FELRGFFCRLRGICDEAFWAPVLGPASTCIAAVLSLPFDVADLLLNLQGILSATELDVLRGGSQLARDLRAGGGEEAVHVYAHSLGALGARNLATAGALAGENVRLWLLAQPWISVGWLAAA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18180.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGY1_ECTSI0.000e+087.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZF00_9STRA4.890e-7249.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XTN3_9STRA1.170e-1338.89Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..591
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1647454..1657237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18180.1mRNA_Ecto-sp6_S_contig9.18180.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig9 1647409..1658451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig9.18180.1 ID=prot_Ecto-sp6_S_contig9.18180.1|Name=mRNA_Ecto-sp6_S_contig9.18180.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=592bp
MCSVCYLLTAVLGSTLSPRMVGTSARVRVWRTTRPLLVFLLLCSLPRSLS
LPRSTAAASAQRWTLPQSSVNLRDQTRSNLRNGNRPRRSARSHSESALPT
RRAHRHQQSRSTNTEQRRPNNRNRRPKGDIRINGRGSKPTVPRSSRARTK
NTKTAPNASVTSSITLDGEAAAPPPSLWHRQRRTSADAPPATRTDRHHRA
ATADNPPPTTASRRFGPGACARRRRDVAAGASPPSRTRRPGRIGRAKARL
KRSRRSGAHGLVSTGGACRYLVSPGGWCEATSVGKATVHVVAGALASSHS
VVAGFVVGLAVWATCAKRLTGADDDWKQVARITIEVAVMWYCHALPHGLG
AGRPLRGNFGTGKAGDLLGAMWHFLGQGAFIRLVAASGRVVSLNVLEANG
ILLGLSHLGNGLAGSRMRRVVGATGAAAAAAATTTTTKAHAYQLRGFFSR
TNGIFGERPILSMPFDTADTLLALQGILSATEREVVQKNGVLASAFRDFA
AQSANTLDAHSLGAVGARNLMGMGFIAARVRMFGRPALSLGWTEKATNMC
MEGDPICGSLLQKLLDPTCVMLKGRGHFYDAYVACVACLAN*
back to top