mRNA_Ecto-sp6_S_contig9.18167.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18167.1
Unique NamemRNA_Ecto-sp6_S_contig9.18167.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18167.1 vs. uniprot
Match: D7G0P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P4_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 6.170e-82
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 1 
Query:    1 MAVRVALAAANIAGISFAGKSPRWMPNWPSLSGIDQKTLEDVFDPRHVEEYVRGDLPPSIVRKFGRRKRRVDDLVGLLRYAWARKLEHVSELARLTHEKELHSAVSAALSVSTDVAEGAEGEPGLLGPTPAEEFFSFS 414
            MAVRV++AAANIAGISFAGKSPRW+PNWPSLSGIDQKTLED+FDPRHVEEYVRGDLPPS+VRKF RRKRRVDDLV LLRYAWARKLEHVSELARLTHEKELHSAVSAALSVSTDVAEGAEGEPGLLGPTPAEEFF  S
Sbjct:    1 MAVRVSMAAANIAGISFAGKSPRWVPNWPSLSGIDQKTLEDIFDPRHVEEYVRGDLPPSMVRKFDRRKRRVDDLVDLLRYAWARKLEHVSELARLTHEKELHSAVSAALSVSTDVAEGAEGEPGLLGPTPAEEFFFLS 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0P4_ECTSI6.170e-8293.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1524739..1529385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size928
Hectar predicted targeting categoryother localisation
Exons7
Cds size666
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18167.1prot_Ecto-sp6_S_contig9.18167.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1524739..1528338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350532.9978101-CDS-Ecto-sp6_S_contig9:1524738..15248491682350532.9978101-CDS-Ecto-sp6_S_contig9:1524738..1524849Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1524739..1524849 +
1682350533.008275-CDS-Ecto-sp6_S_contig9:1525549..15256441682350533.008275-CDS-Ecto-sp6_S_contig9:1525549..1525644Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1525550..1525644 +
1682350533.0172582-CDS-Ecto-sp6_S_contig9:1526333..15264271682350533.0172582-CDS-Ecto-sp6_S_contig9:1526333..1526427Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1526334..1526427 +
1682350533.02728-CDS-Ecto-sp6_S_contig9:1527090..15273751682350533.02728-CDS-Ecto-sp6_S_contig9:1527090..1527375Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1527091..1527375 +
1682350533.0370927-CDS-Ecto-sp6_S_contig9:1528257..15283381682350533.0370927-CDS-Ecto-sp6_S_contig9:1528257..1528338Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1528258..1528338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350533.0466988-UTR-Ecto-sp6_S_contig9:1528338..15283761682350533.0466988-UTR-Ecto-sp6_S_contig9:1528338..1528376Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1528339..1528376 +
1682350533.0564349-UTR-Ecto-sp6_S_contig9:1529002..15291921682350533.0564349-UTR-Ecto-sp6_S_contig9:1529002..1529192Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1529003..1529192 +
1682350533.0664675-UTR-Ecto-sp6_S_contig9:1529351..15293851682350533.0664675-UTR-Ecto-sp6_S_contig9:1529351..1529385Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1529352..1529385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18167.1

>prot_Ecto-sp6_S_contig9.18167.1 ID=prot_Ecto-sp6_S_contig9.18167.1|Name=mRNA_Ecto-sp6_S_contig9.18167.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=222bp
MAVRVALAAANIAGISFAGKSPRWMPNWPSLSGIDQKTLEDVFDPRHVEE
YVRGDLPPSIVRKFGRRKRRVDDLVGLLRYAWARKLEHVSELARLTHEKE
LHSAVSAALSVSTDVAEGAEGEPGLLGPTPAEEFFSFSTGRRQRCPPHGG
HHRCSRHGHHGHGRPILGCPRRTNSHPRHKAASGRRGRGHRLAGALRTRP
ERPPRPSTSGRGGRFATSRRR*
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mRNA from alignment at Ecto-sp6_S_contig9:1524739..1529385+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18167.1 ID=mRNA_Ecto-sp6_S_contig9.18167.1|Name=mRNA_Ecto-sp6_S_contig9.18167.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4647bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1524739..1529385+ (Ectocarpus species6 EcLAC_371)
ATGGCAGTCCGCGTGGCGTTGGCTGCGGCGAATATTGCGGGAATCAGCTT
CGCGGGTAAATCGCCCCGCTGGATGCCCAACTGGCCTTCTCTTTCGGGCA
TAGACCAGAAGGTGCGTCATCGAGCGCGGTGTCAAAACTGCGGTGGGTAG
CTACATGTAGATTTGTGATATTTGGAGAAAGCTACCGCTGTAGACTAGAG
CGGGCCGAGATGAAAGAACCTTGTCCGCATACTACGAGTTGTTGCGTTCC
AATTGTATGATCAGAGTAGCGGGGGTCTGCTGATGCGAGTGAGCCTGACG
TAGACACCACACACCAGAGAGGTTCCCTGCAAACGAAAGTTAAACATCAC
CAAGCAAGGTGCATTACCCAAGGAAACCAAGCAGAAGTCTCCCTCCGTAG
CATTGCTCCACCGAAACAATCCGATCGCAATCTCCGTAGATTTACCAACG
TAGACTATGCGCAGAATCCGCATGCCAAGAATAAATATGTACAATAATAG
ATACGCCGAGAGTACGCAAGGCCCGGCCGGTCTCAAGCAACGCAATTTAC
GCCGCAACTCCCAACAAACTGGAAGGCTCGCATGGGTTTTGCTCGTCCCT
CGGCTCGTCCCTCTGCTACACGTCAAGCCGCTCGGTGCGGTGCCCTTGTG
GATTTTTGCGGATAGTCCCTTTTGGCTTGAGCGCGGGCGTGTGTGGTGCT
TCTCGGCCCCGGCCAACTGTTTCGGGCAGACTTGTTGTTCCTGGCGCTCC
TACTTTTGCACTCCCCTTGTACAATACTGCCTTTCTGCTCCTGCAACTGC
CGCTCCTCCAGACTCTCGAAGATGTATTCGACCCTCGCCACGTGGAAGAG
TACGTCCGTGGGGATTTGCCGCCCAGTATCGTGCGGAAATTTGGCCGCAG
GAAGAGGTGAGAGATGCCTGGATCGCAGTTTTTGGCCCTGTTGTGAACAT
GTGTTCGAACGGGGTAGGTACTACTTATCTCGGACGGGTAGCAGATGCAA
TATACGTATATGCAAACAAACTACATGGATTTTCTAGCAAAGAGTATTTG
AGACGTGCTCTTTCTCCCACCCCAAAACGGTCAACTCAAATGAACCTATG
TATGTATGGAAAGCAAGAGGGTGGTGTTTGTTTTACTCCATTTCCACAAG
CTTGTTCCATGCCAAGGGTTTGTGGTAGATATCAACGACATGATTCCGCG
AAAAACGCCCTATTAATAGTTGCCTTGACAGAGATTGGGGCATGTCGCTA
CGCGCACAAACAGTAATTCTACAAGCCACTGTAGTTGCAACGAGCGTGTG
CGGCGTCTACCCCCAGAGTGCACGGGGTGCAAAACACCATGGCTTTCAGC
TCTTCCAACCCGAGAACTAGAGCAAACGGGTCGAATCAAGTGTCTTCTTG
GTTCGCTTGTGTTTGTAGTCCCGGAGAACAAGCGTTCCTCGCTTGTTGAA
AACCAGGCCCATCCCCACCCGAATCGACGCCTCGCGCATCACTGCGACAT
CAATAAACAAACAATTTCTCCTTTTGACGATGTAAGAAACAATCTCGTGT
GTGTGCGTGATTGGTGCGGCATCTCGACGAACGAACAACTTGCAGGCGTG
TCGACGACCTTGTTGGCCTCCTCCGCTACGCGTGGGCTCGGAAGCTTGAG
CACGTCAGTGAGCTCGCCCGCCTTACACACGAGAAAGAGGTGAGGCAAAA
AAATACAACAGCACAGCAGCACTAGTCGAACATTCAAGACGTTTGATGGA
TTGGGCTCGTCGTGTGTGTCCAATCTTGCGCGAATTCTTATGTTCATCGC
CACAAACCGTGCCGACGGGAAGATGCAGATCGTGCACCTCCGAGCTGGAA
ACGTCCGGCTACCGGATGGCGAGAAAGTGTTTTTTAGCGGTCACTTCTTT
CAGAGGTCGCAACTCAGCTAATCCCCGACTCTGAAAATCCGTCCAACTTG
TCCCGGAAATCGCTTCTCGAAACAAAAATCCCAAAGAATCCCGCCGGTGT
TGCACATTTTTAAAACGTGGACCAGTGGCCGTCCTAATCGCTGAATCCGT
GGGGAGTAAACTGCCATGAACACAAACCGGTCAGTGAAATAACTGCTTAG
GCCATTGGCGCCTCGTCGAGTTTTGTTTTTCCTTTCCTTCAAAGTGGTGG
AACGGAGCGTTTGGGTGCGAGCTCGTCATGGAGCGAAGAGGTGTTTCGAG
GGTGAGCAACCTCGCCTTCGTTCCTTGCAACACTGCTCCCGGATATCCTA
ACAAGACGATCGCGCAATCAAAACCCGTGACTGCTTTGAAACCGTTCCTC
ACATTCGTCTCATCTACCTTGCCCTCCCCCTGCGCAATTGCTCGCCGGTC
AGCTCCATTCGGCGGTGTCGGCAGCACTGAGCGTGTCCACCGATGTGGCC
GAGGGGGCGGAGGGGGAGCCTGGACTCCTGGGTCCGACGCCGGCGGAGGA
GTTTTTTTCTTTCTCCACCGGGCGCCGTCAACGCTGCCCCCCTCACGGAG
GTCATCATCGCTGCTCCCGTCACGGGCATCACGGGCACGGCAGGCCCATC
CTCGGATGTCCAAGAAGGACCAACAGCCATCCACGGCACAAGGCCGCATC
CGGCCGTCGCGGGCGCGGTCATCGTCTCGCTGGTGCTGTTTGTTGTCGGA
GCGGCAATTTGGGCAGGTCGGCGATTCGTCACGGTGGTGCATCGTCGGCG
GCAGGTCGCGGTGTTGAAGCTGGAGGTAATGTCCCATCACATTTTTCCTG
CCAATGGAACGGTGGCGCTTGCAACTACCGTCACCCACCAGCACCTTTCC
TCTCTCAATAGAGGGCGAAGAGCAAGAAGAACATCTGCTTACCTCCTCTG
TCGCTCTCTCTCTCAAACACAATAACAAACCAACCGTTCTTTTTTTCACA
CGCAGAGAATGCGTTCAATGATTGCGGAACACTAGGAATCTTCGAATCGA
TCGGTTTGAGGGTGTGGGGTGGTGTGAGCCGGCGAAAACGCTCGCGCTGT
CATTCCCATCATCATGTCTCCACCCTCCCTCCCTTCCTCCCGCTAACGGA
TGGTTGTTATTTTTGGCGCTGAAAGTTCAACACCCACCACATACGTACAT
ACGTGCACAGCAAACCTGCCCGCAGGGCTGAGCCTCGGCGACGTGCCCCG
AGTCGTCGTCCGTCGCATTCGAAAGGTGGTCCTCGAGGCCGCGAATCTCA
ATGGTAGCCGCCTCAATACTAGCCTTTCCGTTGACAGGGGCAAGCAGAAG
TTGAACGTTAAGCGCTAGGGTTGCCATCCGTCTGCAAGAGAATGAAAAAT
TCCGGTATAGAATTGTTTTTCGCCTTGGCTTTGCTTCTTGGACGCCCCAC
CAAGGTCCCCGCTGTGGTCGCGGCAATGAATGACCCGGACGCAGAGTGTC
GTACAGCGAGTATAAGAACAGAAACCGGCCAGCCGCAACACTTCCCAGTC
ATGACTTTGCGTTTTCGAACCAAACACCAACCTCGGTGGCGCATACCCTG
GTCGTGTTACAGAAGCAAGCTGCGGACAAGGCCCGAAAGGCCACCGCGAC
CGAGCACCAGCGGCAGAGGAGGCAGGTTCGCCACCTCGCGAAGGAGGTAG
CGTTGACCCGTGGCAGACTGTCTGCCGCACAGGCGCAGGTGGGTCGAGAA
GGCGGTTTATGGTCTACTGGTGGTCGTTTGTCGCTGCTGGTGTAACGCAA
AATACCGGTAGAACAATTGTTCACCTTGATTCTGTCACCGTCTCATCTAG
TCATGGCATTCGGAGGCGGCTTCGGGAACTCAATCCTCACGAGCACCGAA
TTTGGCAGTTAAAAGCAGACCACTGCGCTTGCAAACGTGAATCCGTTTGT
ATTTTACTCACTAATATATACTTCGAGGTATACATATATCACTTTTCATT
GCTACGAAATGCGCATTGTCCCCATCTCGCCAGGGATGGAGTCGCGAACC
CGCTAGATATAATTCTAGACAGTGCCACCTAAATAGACCACAACGGCGAC
CAGCACACGCCACGAGGAAAAGGGCGAGTGAGGAAGTAGGTCAAGGTAGT
GCAGTCATCATGTCGTCTCCCCGTGGTCTTGCCGCTTGTGCGATGCCCTA
GCAAGGCCCCCCCTTATGCCTTCCGGCACAAAACGGTGCGACTCGGAATT
TCGTGCACCAAGTGAAAACAACCGCACCCAGCCAGCCGTAACACAGCACA
TTCATGACTTTGCGCTTCCAACCAAACACCAACCTCCGTGGCACACGCCC
TGGCCGTGGTACAGCTGGTCGTGGTACAGAACGAGGCTGCGGACGCACTG
GTCGTGGTACAGAATGAGGCTGCGGAAGCGCTTGTCGTGGTACAGAACGA
GGCTGCGGAAGCGGCCCGGGAGGCCAACGCGACCGAGTACCAGCGGCAGC
GGAGACAAATTCGCCACTTGGCCACGGAGCTCGAGGCCAAGCAGAAGCAG
GCGGGTCACGAACGCAGTTTGGCCTGCACAAATTCATTTGTGGTCGCTGG
TGTGTCTGGTCACATTGACAGTGTGACTTCAGTTCATGTCTGCTACCCTC
GCGTGTATCGATCATGGTGAACCAAGCTTGTCTCTGATATCTGCCTGTCT
CGTTGGCAGGTAGAGGCAACGTCACGGGCGCTAGCGGAGGCGCAGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1524739..1529385+

>mRNA_Ecto-sp6_S_contig9.18167.1 ID=mRNA_Ecto-sp6_S_contig9.18167.1|Name=mRNA_Ecto-sp6_S_contig9.18167.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1524739..1529385+ (Ectocarpus species6 EcLAC_371)
ATGGCAGTCCGCGTGGCGTTGGCTGCGGCGAATATTGCGGGAATCAGCTT
CGCGGGTAAATCGCCCCGCTGGATGCCCAACTGGCCTTCTCTTTCGGGCA
TAGACCAGAAGACTCTCGAAGATGTATTCGACCCTCGCCACGTGGAAGAG
TACGTCCGTGGGGATTTGCCGCCCAGTATCGTGCGGAAATTTGGCCGCAG
GAAGAGGCGTGTCGACGACCTTGTTGGCCTCCTCCGCTACGCGTGGGCTC
GGAAGCTTGAGCACGTCAGTGAGCTCGCCCGCCTTACACACGAGAAAGAG
CTCCATTCGGCGGTGTCGGCAGCACTGAGCGTGTCCACCGATGTGGCCGA
GGGGGCGGAGGGGGAGCCTGGACTCCTGGGTCCGACGCCGGCGGAGGAGT
TTTTTTCTTTCTCCACCGGGCGCCGTCAACGCTGCCCCCCTCACGGAGGT
CATCATCGCTGCTCCCGTCACGGGCATCACGGGCACGGCAGGCCCATCCT
CGGATGTCCAAGAAGGACCAACAGCCATCCACGGCACAAGGCCGCATCCG
GCCGTCGCGGGCGCGGTCATCGTCTCGCTGGTGCTCTGCGGACAAGGCCC
GAAAGGCCACCGCGACCGAGCACCAGCGGCAGAGGAGGCAGGTTCGCCAC
CTCGCGAAGGAGGTAG
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