mRNA_Ecto-sp6_S_contig9.18147.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18147.1
Unique NamemRNA_Ecto-sp6_S_contig9.18147.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1372842..1373351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001820.1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350531.0024571-CDS-Ecto-sp6_S_contig9:1372841..13728831682350531.0024571-CDS-Ecto-sp6_S_contig9:1372841..1372883Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1372842..1372883 +
1682350531.0143774-CDS-Ecto-sp6_S_contig9:1373255..13733511682350531.0143774-CDS-Ecto-sp6_S_contig9:1373255..1373351Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1373256..1373351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18147.1prot_Ecto-sp6_S_contig9.18147.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1372842..1373351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18147.1

>prot_Ecto-sp6_S_contig9.18147.1 ID=prot_Ecto-sp6_S_contig9.18147.1|Name=mRNA_Ecto-sp6_S_contig9.18147.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=46bp
MMNAYHGGQHAINAVGYTWSVIKRYAARVSDRPETRLCDATRMTK*
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mRNA from alignment at Ecto-sp6_S_contig9:1372842..1373351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18147.1 ID=mRNA_Ecto-sp6_S_contig9.18147.1|Name=mRNA_Ecto-sp6_S_contig9.18147.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1372842..1373351+ (Ectocarpus species6 EcLAC_371)
ATGATGAACGCGTACCACGGCGGCCAGCACGCGATCAACGCGGTGAGCAT
TAACATTCTGCTGTGTGACCATGTGATGATAGACGCCAGGCCTGGCCTAC
GGGTGGAACGTGTGTGTAACCCATAATTGAGTGGTGACTCCTTCAGCCGA
AGGAAAGAGGGCCGAAGGCTGAGCCTAACCTGATTCTGGTGCTGAGACAC
TGATGAAATCAACTTTCCTTAAATAACGAAACGCACGACAGCATGTACCG
CCAGCGGTGGGTATTCGTTAACCGTATCGTAAGCAAAGTGCCGTGAGGTA
GCGTTTACCCGTGGTGAACGAACGGCTCACGTGCCTCCTGTATGTGGTCG
CCTTAGAATATGACGGCATTCCACATATACCGCACACGTACGACCCCTTC
CCACTGTTTACGAGGTGGGCTACACCTGGTCCGTCATCAAGAGGTACGCC
GCTCGGGTGTCTGACCGTCCCGAGACCCGATTGTGCGATGCGACGCGGAT
GACGAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1372842..1373351+

>mRNA_Ecto-sp6_S_contig9.18147.1 ID=mRNA_Ecto-sp6_S_contig9.18147.1|Name=mRNA_Ecto-sp6_S_contig9.18147.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1372842..1373351+ (Ectocarpus species6 EcLAC_371)
ATGATGAACGCGTACCACGGCGGCCAGCACGCGATCAACGCGGTGGGCTA
CACCTGGTCCGTCATCAAGAGGTACGCCGCTCGGGTGTCTGACCGTCCCG
AGACCCGATTGTGCGATGCGACGCGGATGACGAAATGA
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