mRNA_Ecto-sp6_S_contig9.18137.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE) HSP 1 Score: 769 bits (1985), Expect = 1.150e-278 Identity = 401/447 (89.71%), Postives = 413/447 (92.39%), Query Frame = 1
Query: 1 MIIIAALAVSAFSVSSPSHEVPSSTAPGRNDSFVDKVFLFATTVGFGDTSPTPPLSRLPSAEEGHDDFPLTIIPPLWRLEDAAAGAAEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRFLRSARNKIKNTKDRLLAMFDISAARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVRSFKDILEHAPVSLEHFLTGYRAAMVGVPACDGWVEPV 1341
MIIIAALAVSAFSVSSPSHEV S TAPGRNDSF DKVFLFATTVG GD SPTPPLSRLPSAEE P TIIPPLWR+EDA QRPRE+WLKSIVATIMVAVRFL+GPNGQR RQGCRGD XXXXX APAQRATWRERAAAAARRFLRSARNKIKN KDRLLAMFDIS A+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSV+SF+DILEHAPVSLEHFLTGYRAAMVGVPAC+ VEPV
Sbjct: 1 MIIIAALAVSAFSVSSPSHEVSSGTAPGRNDSFADKVFLFATTVGTGDPSPTPPLSRLPSAEENPPVLPPTIIPPLWRVEDAXXXXXXXXQRPRESWLKSIVATIMVAVRFLVGPNGQRTRQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 446
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE) HSP 1 Score: 729 bits (1882), Expect = 1.400e-260 Identity = 377/418 (90.19%), Postives = 391/418 (93.54%), Query Frame = 1
Query: 85 RNDSFVDKVFLFATTVGFGDTSPTPPLSRLPSAEEGHDDFPLTIIPPLWRLEDAAAGAAEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRFLRSARNKIKNTKDRLLAMFDISAARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVRSFKDILEHAPVSLEHFLTGYRAAMVGVPACDGWVEP 1338
RNDSFVDKVFLFATTVG GD SPTPPLSR+PSAE+ TIIP LWR+EDAA AAEEQQRPRE+WLKSIVATIMVAVRFL+GPNGQRARQGCRGD XXXXX APAQRATWRERAAAAARRFLRSARNKIKN KDRLLAMFDIS A+RTARLLDLARKINVQDMPRRAGFRRQGSDELFEVD SRLGVS+ VAAAVKEICTKLAA FPVIGYNQGFDA+CKA+FICVGGNLG AAAVFTKWAVPLAWMMMNPYR GQLGINTAMRYTWSVIKMHA PVSGWL RDPIVGCDEDN+MADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAG+HGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSV+SF+DILEHAPVSLEHFLTG RAAMVGVPAC+ VEP
Sbjct: 34 RNDSFVDKVFLFATTVGTGDPSPTPPLSRIPSAEDYPPVLRPTIIPHLWRVEDAATAAAEEQQRPRESWLKSIVATIMVAVRFLVGPNGQRARQGCRGDDXXXXXH-APAQRATWRERAAAAARRFLRSARNKIKNAKDRLLAMFDISVAKRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTKLAAVFPVIGYNQGFDASCKAIFICVGGNLGVAAAVFTKWAVPLAWMMMNPYRHGQLGINTAMRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGCRAAMVGVPACNDCVEP 450
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE) HSP 1 Score: 410 bits (1054), Expect = 3.590e-139 Identity = 250/421 (59.38%), Postives = 263/421 (62.47%), Query Frame = 1
Query: 79 PGRNDSFVDKVFLFATTVGFGDTSPTPPLSRLPSAEEGHDDFPLTIIPPLWRLEDAAAGAAEEQQRPRENWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRFLRSARNKIKNTKDRLLAMFDISAARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQGFDAACKAVFICVGGNLGAAAAVFTKWAVPLAWMMMNPYRDGQLGINTAMRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVRSFKDILEHAPVSLEHFLTGYRAAMVGVPACDGWVEPV 1341
P RNDSFVDKVFLFATTVG D SPTPPLSRLPSAE+ FP TIIPPLWR+EDA QRPRENWLKSIVA IMVAVRFL+GPNGQRARQGCRGDXXXXXXXX ARRFLRSARNKIKN +DRL AMFDIS A+RTARLLDLARKI VQDMPRRAGFRRQGSDELFE+D SRLGVS+ VAAAVK+ICTKLAA FPVIGYNQ TMRAG+HGP VTIFV+MSLLCLAEKQGAEDADVVVMVKVPLMAAASSV+SF+DILEHAPVSLEHFLTGYRAAMVGVPAC+ VEPV
Sbjct: 10 PRRNDSFVDKVFLFATTVGTWDPSPTPPLSRLPSAEDDPPGFPPTIIPPLWRVEDAXXXXXXXXQRPRENWLKSIVAAIMVAVRFLVGPNGQRARQGCRGDXXXXXXXXXXXXXXXXXXXXXXXARRFLRSARNKIKNAEDRLHAMFDISVAKRTARLLDLARKITVQDMPRRAGFRRQGSDELFEIDRSRLGVSDAVAAAVKDICTKLAAVFPVIGYNQ-------------------------------------------------------------------------------------------------------------------TMRAGIHGPTVTIFVIMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVEPV 315
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: D7FR87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR87_ECTSI) HSP 1 Score: 148 bits (373), Expect = 8.240e-38 Identity = 91/212 (42.92%), Postives = 124/212 (58.49%), Query Frame = 1
Query: 115 LFATTVGFGDTSPTPPLSRLPSAEEGHDDFPL---TIIPPLWRLEDAAAGAAEEQQRPRE-NWLKSIVATIMVAVRFLIGPNGQRARQGCRGDXXXXXXXXAPAQRATWRERAAAAARRFLRSARNKIKNTKDRLLAMFDISAARRTARLLDLARKINVQDMPRRAGFRRQGSDELFEVDSSRLGVSNTVAAAVKEICTKLAAAFPVIGYNQ 738
+ ATT DT PTPPL+R PS E D + + PLWR DA A +EQQ+P E NW K + AT+M+A+R + PN RARQ R D + + W +RA A+AR+ L + ++ K+R L +FD AR TARLL+L +++N +DMPR+ G RRQ S +LF D R + +AA++K+IC L A FP IGYNQ
Sbjct: 61 VLATTSTSIDTPPTPPLTRTPSVEHAGDGAGVLDRVVTVPLWRG-DAVAEQNQEQQQPGETNWPKRLAATVMIAIRLFVRPNDVRARQESRDDENGHDHRHHEPRPSPW-DRARASARKLLDRPGDTLRQAKNRFLGLFDNPIAR-TARLLELVKRLNFRDMPRQPGSRRQSSGDLFIADRCRRRTCSAIAASIKKICATLVAEFPQIGYNQ 269
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: A0A6H5K8H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.000e-20 Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1
Query: 1183 VVMVKVPLMAAASSVRSFKDILEHAPVSLEHFLTGYRAAMVGVPACDGWVEPV 1341
VVMVKVPLMAAASSV+SF+DILEHAPVSLEHFLTGYRAAMVGVPAC+ VE V
Sbjct: 9 VVMVKVPLMAAASSVKSFQDILEHAPVSLEHFLTGYRAAMVGVPACNDCVESV 61
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Match: D8LM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM24_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 9.190e-9 Identity = 43/131 (32.82%), Postives = 52/131 (39.69%), Query Frame = 1
Query: 886 MRYTWSVIKMHAGPVSGWLSRDPIVGCDEDNDMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGLHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVRSFKDILEHAPVSLEHF 1278
M YTWS IKMHA VSGWL RDPIVGC+ ++MA T+L + M+KVPLM AS+VR KD+ E AP + E F
Sbjct: 10 MGYTWSDIKMHAARVSGWLPRDPIVGCNTADEMAWTVLRGV------------------------------------------------------------MMKVPLMVTASTVRYLKDLEERAPAATEKF 80 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18137.1 >prot_Ecto-sp6_S_contig9.18137.1 ID=prot_Ecto-sp6_S_contig9.18137.1|Name=mRNA_Ecto-sp6_S_contig9.18137.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=448bp MIIIAALAVSAFSVSSPSHEVPSSTAPGRNDSFVDKVFLFATTVGFGDTSback to top mRNA from alignment at Ecto-sp6_S_contig9:1276982..1280430+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18137.1 ID=mRNA_Ecto-sp6_S_contig9.18137.1|Name=mRNA_Ecto-sp6_S_contig9.18137.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3449bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1276982..1280430+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1276982..1280430+ >mRNA_Ecto-sp6_S_contig9.18137.1 ID=mRNA_Ecto-sp6_S_contig9.18137.1|Name=mRNA_Ecto-sp6_S_contig9.18137.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1344bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1276982..1280430+ (Ectocarpus species6 EcLAC_371)back to top |