mRNA_Ecto-sp6_S_contig9.18164.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18164.1
Unique NamemRNA_Ecto-sp6_S_contig9.18164.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1507794..1508138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categorymitochondrion
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350515.0428114-UTR-Ecto-sp6_S_contig9:1507793..15077971682350515.0428114-UTR-Ecto-sp6_S_contig9:1507793..1507797Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1507794..1507797 +
1682350515.0651844-UTR-Ecto-sp6_S_contig9:1508124..15081381682350515.0651844-UTR-Ecto-sp6_S_contig9:1508124..1508138Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1508125..1508138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350515.0550065-CDS-Ecto-sp6_S_contig9:1507797..15081241682350515.0550065-CDS-Ecto-sp6_S_contig9:1507797..1508124Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1507798..1508124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18164.1prot_Ecto-sp6_S_contig9.18164.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1507798..1508124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18164.1

>prot_Ecto-sp6_S_contig9.18164.1 ID=prot_Ecto-sp6_S_contig9.18164.1|Name=mRNA_Ecto-sp6_S_contig9.18164.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=109bp
MLFLTSSRKLGIPATNMQVTFCGIHRAHLSVPMAELNTKVFFLFRTLILA
ATSGFASGGGAYCIPSVKLLTDAYCSLLCSRHRVSQRLFCSTCRFACALS
ESTQQHPF*
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mRNA from alignment at Ecto-sp6_S_contig9:1507794..1508138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18164.1 ID=mRNA_Ecto-sp6_S_contig9.18164.1|Name=mRNA_Ecto-sp6_S_contig9.18164.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1507794..1508138+ (Ectocarpus species6 EcLAC_371)
CCGAATGTTATTTCTTACTTCCTCTCGCAAGTTGGGTATCCCAGCAACGA
ATATGCAAGTTACATTCTGCGGCATTCATCGCGCACACCTGTCTGTTCCA
ATGGCCGAACTAAATACGAAAGTTTTTTTTTTGTTTCGAACCTTAATTCT
TGCTGCAACTTCCGGGTTTGCAAGTGGTGGCGGTGCGTACTGCATTCCTT
CCGTGAAGCTATTAACAGATGCATACTGTAGTCTACTCTGCTCTCGACAC
CGCGTGTCCCAACGCTTATTCTGCAGCACTTGCCGGTTCGCGTGTGCTCT
CTCGGAATCAACCCAGCAGCACCCTTTCTAGCGATCAAACAGCCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1507794..1508138+

>mRNA_Ecto-sp6_S_contig9.18164.1 ID=mRNA_Ecto-sp6_S_contig9.18164.1|Name=mRNA_Ecto-sp6_S_contig9.18164.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1507794..1508138+ (Ectocarpus species6 EcLAC_371)
ATGTTATTTCTTACTTCCTCTCGCAAGTTGGGTATCCCAGCAACGAATAT
GCAAGTTACATTCTGCGGCATTCATCGCGCACACCTGTCTGTTCCAATGG
CCGAACTAAATACGAAAGTTTTTTTTTTGTTTCGAACCTTAATTCTTGCT
GCAACTTCCGGGTTTGCAAGTGGTGGCGGTGCGTACTGCATTCCTTCCGT
GAAGCTATTAACAGATGCATACTGTAGTCTACTCTGCTCTCGACACCGCG
TGTCCCAACGCTTATTCTGCAGCACTTGCCGGTTCGCGTGTGCTCTCTCG
GAATCAACCCAGCAGCACCCTTTCTAG
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