mRNA_Ecto-sp6_S_contig9.18089.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18089.1
Unique NamemRNA_Ecto-sp6_S_contig9.18089.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18089.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.030e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 2 
Query:   65 HPPAAGSXXXXXXXXXHPGMPPQGMAPSMGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGVNPYEGMSMNPYEGM 295
            HPPAAGS  XXXXXXX  GMPPQGMAP MGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGVNPYEGMSMNPYEGM
Sbjct:  561 HPPAAGSGAXXXXXXXXXGMPPQGMAPGMGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGVNPYEGMSMNPYEGM 637
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18089.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.530e-30
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2 
Query:  113 HPGMPPQGMAPSMGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGVNPYEGMSMNPYEGM 295
            HPGMPPQGMAP MGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQG+NPYEGMS+NPYEGM
Sbjct:  588 HPGMPPQGMAPGMGVPMAYHPQYGMYSPYPQSLYAAYLAQYQLQQGINPYEGMSINPYEGM 648
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM00_ECTSI1.030e-3293.51Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE1.530e-3095.08Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:921016..921340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categorymitochondrion
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.8456614-CDS-Ecto-sp6_S_contig9:921015..9213391682350514.8456614-CDS-Ecto-sp6_S_contig9:921015..921339Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 921016..921339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18089.1prot_Ecto-sp6_S_contig9.18089.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 921016..921339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18089.1

>prot_Ecto-sp6_S_contig9.18089.1 ID=prot_Ecto-sp6_S_contig9.18089.1|Name=mRNA_Ecto-sp6_S_contig9.18089.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
RRSAAAAAAAAAKGWRSSPSPAPASSRIRSWSPLAGASPGDAPPGHGAEH
GRADGLPPAVRHVLTVPAVAVRGVPRAVPAPAGGQPLRRDEHEPLRRHEP
LRRHEPLR
back to top

mRNA from alignment at Ecto-sp6_S_contig9:921016..921340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18089.1 ID=mRNA_Ecto-sp6_S_contig9.18089.1|Name=mRNA_Ecto-sp6_S_contig9.18089.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=325bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:921016..921340+ (Ectocarpus species6 EcLAC_371)
CGCAGATCAGCAGCAGCAGCAGCAGCAGCAGCTGCAAAAGGCTGGCGCTC
CAGCCCCAGCCCAGCACCCGCCAGCAGCAGGATCAGGAGCTGGAGCCCCC
TCGCCGGCGCCTCACCCGGGGATGCCCCCCCAGGGCATGGCGCCGAGCAT
GGGCGTGCCGATGGCCTACCACCCGCAGTACGGCATGTACTCACCGTACC
CGCAGTCGCTGTACGCGGCGTACCTCGCGCAGTACCAGCTCCAGCAGGGG
GTCAACCCTTACGAAGGGATGAGCATGAACCCTTACGAAGGCATGAACCC
TTACGCCGGCATGAACCCCTACGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:921016..921340+

>mRNA_Ecto-sp6_S_contig9.18089.1 ID=mRNA_Ecto-sp6_S_contig9.18089.1|Name=mRNA_Ecto-sp6_S_contig9.18089.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:921016..921340+ (Ectocarpus species6 EcLAC_371)
CGCAGATCAGCAGCAGCAGCAGCAGCAGCAGCTGCAAAAGGCTGGCGCTC
CAGCCCCAGCCCAGCACCCGCCAGCAGCAGGATCAGGAGCTGGAGCCCCC
TCGCCGGCGCCTCACCCGGGGATGCCCCCCCAGGGCATGGCGCCGAGCAT
GGGCGTGCCGATGGCCTACCACCCGCAGTACGGCATGTACTCACCGTACC
CGCAGTCGCTGTACGCGGCGTACCTCGCGCAGTACCAGCTCCAGCAGGGG
GTCAACCCTTACGAAGGGATGAGCATGAACCCTTACGAAGGCATGAACCC
TTACGCCGGCATGAACCCCTACGC
back to top