mRNA_Ecto-sp6_S_contig9.18051.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18051.1
Unique NamemRNA_Ecto-sp6_S_contig9.18051.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:610489..610978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size491
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.7833812-UTR-Ecto-sp6_S_contig9:610488..6105521682350514.7833812-UTR-Ecto-sp6_S_contig9:610488..610552Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 610489..610552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.7916818-CDS-Ecto-sp6_S_contig9:610552..6109781682350514.7916818-CDS-Ecto-sp6_S_contig9:610552..610978Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 610553..610978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18051.1prot_Ecto-sp6_S_contig9.18051.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 610553..610978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18051.1

>prot_Ecto-sp6_S_contig9.18051.1 ID=prot_Ecto-sp6_S_contig9.18051.1|Name=mRNA_Ecto-sp6_S_contig9.18051.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=142bp
MDRQTVVREHKPQTLPFPGKAPRNVFSCCAHVRNVEHCYWLLVHACIPLA
NPELAASRGLETNCTFMFSRTNTNAPCVFRLSGELSCPILHMHPSLTTPC
NFVCQFLTRHFLVFLPSCGVFLVGVPLRHVNLRLNAMPIPML
back to top

mRNA from alignment at Ecto-sp6_S_contig9:610489..610978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18051.1 ID=mRNA_Ecto-sp6_S_contig9.18051.1|Name=mRNA_Ecto-sp6_S_contig9.18051.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=490bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:610489..610978+ (Ectocarpus species6 EcLAC_371)
TGAGGGTATATTGTTAGTATTTCCTACGGTTCGCAGCCGTTCTTCAAAGT
GTTGTTTGACGTAAATGGACCGACAGACGGTAGTAAGAGAACACAAACCT
CAGACCTTGCCTTTTCCTGGGAAAGCACCTCGTAACGTTTTCTCATGTTG
TGCGCACGTGCGAAATGTAGAGCATTGTTACTGGTTGCTTGTGCATGCGT
GTATACCGTTGGCGAACCCGGAGCTAGCCGCAAGCAGGGGGCTAGAGACG
AACTGTACTTTCATGTTCTCGCGTACAAACACAAATGCCCCGTGTGTTTT
CCGCCTCTCCGGCGAGCTCTCCTGTCCTATTCTTCACATGCATCCCTCTC
TCACAACTCCCTGCAATTTTGTATGTCAATTTCTCACCAGACATTTTCTT
GTCTTTCTCCCAAGCTGCGGAGTTTTTCTTGTTGGGGTTCCATTGCGTCA
CGTCAACCTGCGCCTAAACGCAATGCCCATCCCAATGCTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:610489..610978+

>mRNA_Ecto-sp6_S_contig9.18051.1 ID=mRNA_Ecto-sp6_S_contig9.18051.1|Name=mRNA_Ecto-sp6_S_contig9.18051.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:610489..610978+ (Ectocarpus species6 EcLAC_371)
ATGGACCGACAGACGGTAGTAAGAGAACACAAACCTCAGACCTTGCCTTT
TCCTGGGAAAGCACCTCGTAACGTTTTCTCATGTTGTGCGCACGTGCGAA
ATGTAGAGCATTGTTACTGGTTGCTTGTGCATGCGTGTATACCGTTGGCG
AACCCGGAGCTAGCCGCAAGCAGGGGGCTAGAGACGAACTGTACTTTCAT
GTTCTCGCGTACAAACACAAATGCCCCGTGTGTTTTCCGCCTCTCCGGCG
AGCTCTCCTGTCCTATTCTTCACATGCATCCCTCTCTCACAACTCCCTGC
AATTTTGTATGTCAATTTCTCACCAGACATTTTCTTGTCTTTCTCCCAAG
CTGCGGAGTTTTTCTTGTTGGGGTTCCATTGCGTCACGTCAACCTGCGCC
TAAACGCAATGCCCATCCCAATGCTA
back to top