mRNA_Ecto-sp6_S_contig89.17949.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17949.1
Unique NamemRNA_Ecto-sp6_S_contig89.17949.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17949.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 2.140e-104
Identity = 197/233 (84.55%), Postives = 205/233 (87.98%), Query Frame = 1 
Query:   22 MLGAPLIGGXXXXX--SGSAPYDALFQGLVGSGCVAGLALLDASRGRPLYENRLDGRLPRPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDNKDNEKELIGARGGGEGPGHRFGLVSPSEGQRLVAAVKSLTDDDDARCRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFLVVVFRRPHLPQQVVGEVEKFVDDFWAGTQGRAVGSPLP 714
            MLGAPL  G XXXX  SGSA YDALFQGLVGSGC+AGLALLDASRGRPLYENRLD RLPRPP              XXXXXXXXXXXXXXXXXXXXX +DNK++ KE++GARGGGEGPG R GLVS SEGQRLVAAVKSLTDDDDA CRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGL+VRALPRVGFLVVV+RRPHLPQQVVGEVEKFVDDFWAGTQGRAV SPLP
Sbjct:   65 MLGAPLTSGGXXXXAGSGSASYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPP--------------XXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLP 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE2.140e-10484.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:426825..431780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1589
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350510.833584-CDS-Ecto-sp6_S_contig89:426824..4268451682350510.833584-CDS-Ecto-sp6_S_contig89:426824..426845Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 426825..426845 +
1682350510.842104-CDS-Ecto-sp6_S_contig89:429049..4294421682350510.842104-CDS-Ecto-sp6_S_contig89:429049..429442Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 429050..429442 +
1682350510.8502202-CDS-Ecto-sp6_S_contig89:429877..4300771682350510.8502202-CDS-Ecto-sp6_S_contig89:429877..430077Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 429878..430077 +
1682350510.8594825-CDS-Ecto-sp6_S_contig89:430805..4309471682350510.8594825-CDS-Ecto-sp6_S_contig89:430805..430947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 430806..430947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350510.869456-UTR-Ecto-sp6_S_contig89:430947..4317801682350510.869456-UTR-Ecto-sp6_S_contig89:430947..431780Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 430948..431780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17949.1prot_Ecto-sp6_S_contig89.17949.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 426825..430947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17949.1

>prot_Ecto-sp6_S_contig89.17949.1 ID=prot_Ecto-sp6_S_contig89.17949.1|Name=mRNA_Ecto-sp6_S_contig89.17949.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=252bp
MESCQHQMLGAPLIGGGGGGGSGSAPYDALFQGLVGSGCVAGLALLDASR
GRPLYENRLDGRLPRPPPAAGTAAAAAAAAAAAASAAAAATAAAAATATA
AARKDNKDNEKELIGARGGGEGPGHRFGLVSPSEGQRLVAAVKSLTDDDD
ARCRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLIVRALPRVGFL
VVVFRRPHLPQQVVGEVEKFVDDFWAGTQGRAVGSPLPPPPPPPPRSSTR
R*
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mRNA from alignment at Ecto-sp6_S_contig89:426825..431780+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17949.1 ID=mRNA_Ecto-sp6_S_contig89.17949.1|Name=mRNA_Ecto-sp6_S_contig89.17949.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4956bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:426825..431780+ (Ectocarpus species6 EcLAC_371)
ATGGAGTCTTGTCAGCATCAGGTGTGCGCTGATCTGTGCATGCTCACAAC
CGTTTGCCGCCCCCTGCACCCACTCCTCCATTGTTTCAGCAACCGATCGC
AACAGACATTCAGACGATTGAAACATTGGAGGTTGACACATATTTTGAAT
TTCGATCCCACCATTGGGGCTCGAACGCGTAGCGGAACGATTTGTCCGCA
CGTCCACGCTGGGGTAGTAGTGTAGTAGTGAATTTTCCCCCGCTGATGGA
CACTTGATGCTACGCTTGGAGCATGCACGTACGTGGAGTACGCCAAGTAT
CACGTTGATGTTCGTGTACCAGAAGGCGGGAAGGGTCCGTAGAGAGAGGA
AGGGCCAAACGAAGACACCAAAACCCAATATTCGCACATCGCACGGTCAC
TACTGACGTGTGTATTGCATGTACCGAAGGTGCGGAAGATGGGTGACAAT
GTGCCACTCTGCTCTATCTATCGCTCTGCCTGACCCCAACTGTCTCATTT
GCACGAATATGCCCTACAATGTATACGGCTGTAGAGACGCCTCGGCGGGG
GAATACGCCTTTCACATTTCAAACAGGACGACTGCTGTATCACTGCTAGT
ATAGCTGCTGTAGCGAAAAGAACCAGCATAAAGGGGTTATCATGTCAAAA
AGGCGGAGGGGAGGAACAAAAACAAACGCCAAAAAAATCTCACGCCGTGA
CGAAGAGTGTGCGCCTGTCCGGAGTGGCGCATTCTTCGCCGCCCATCGTC
TCCCGGGACACTTCTCATCACACTCATCACGCAAGCACGAGTGCGGCAGT
ATCACGGCAGGAGCGAGCGCTGTTCTTTCAACGATCAACGATAACTACTC
GCGGCCGATGTCGCTTCGCTTTCGAACTGCTGTTGTGGTGCCGCTGCACG
TTCGGAGTTCGTTCGCGAATCAGCGGCCAATTAATACTATGTGTGCGCAC
GGCAAGAGGAAACAAACATGCATCCATGGCTTGATGCTGCTGCTTGAGGT
GGCGATGACAGTAAGGCCGGAGGAGTTGGTGATGCTGAACGTACAACGAG
CACACAACCATACAGCAAACCGCGTTATCTTCAAGCGGCGGCAGCCGCAG
ATGGACACTACTGTAGTAGAACATTACTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCAATTTGCGCTATGCTGTATCCCGCTGGTGCAGG
GTATGCCTCGCTTCAAACAGAACAGTACCAACCCACCGAGAATCGTTCCA
ACTGTAATAACACTCTCCTTCTCGGCACAGCTATATAATACAGTACTTTT
TCAGCTACAAGTACTATCTCATCATTGGCCTTTTTCCATGATCCTACGGC
CCCGACCGCAAGACAGCAGCTACACGAGGAAGCGAGCGCGGCCCCAGAGC
GCCAAAATCTACAAGTTTTGTTTTTGTCCGTTGGCCCCGCCGGTAAAAAG
TAACGGGGGGGGGGCGGGCGGTCTCAAAAGAATGGAACATCGTGGTACGC
GTCCATCCACAcagCAGTAGTTGCATGCCAGTTAGAAAGTGGCCGGTCGG
AGTGTCACCGGTAGACCACACTCACCCACGTCATTATTAATCTTCCCCCC
TGTCGCACGATTGAGCACCATCGCCTGTAAGGGTACGCGGGTCGCCGGTT
GGGGGTACGGAAGGGTCTCACCATCAGTGCTCTTCTCGGCGGTTTCAATC
AAGAAGAAGTTATGCATACCGCAATTTATTCTGTGCGCGAGTTCTAGCGG
CGGGGCCCTGTGGATATTCGATGAGCAAATTAGATCCAAATCTATTTTAT
AATGTGCACTCCTGAGTTATCACGCTGAATTTTCGATTTTTCGACGTGAA
CGTAGTGGGACGATAGTATGGGTGCTTGTGGGCAAAAATTGCACCATAGG
ACGTGACTCCGTGTTATCATTTATTTATATCGCGCCAAGAAGCTCTGTTG
ATGTTTCTTTGGTGCAAGCGTAAATAGGAGATGCCCTCGCTCCGCACATG
CATGCCGTGGGGCAAGCTTGTTGTTGTGTCGTCCGTCGAATAAATACTTG
TGCTGACTACAGTATACGTGAAGCCTCTAACATGTAATAACATCGCGGCT
CTCTCGTCACCGAACACGCGATTGGACCCAGACGTAGATACTGCAAGGAA
GGATCCATCACAGGGTAAATAAGCCTTCTTGCCCCCCCGGACCTATTCTT
GCGCCAAAACATGAACAAAATGCAGATGCTTGGAGCCCCTCTGATCGGCG
GCGGCGGCGGCGGCGGGAGCGGCAGTGCGCCTTACGATGCGCTGTTCCAG
GGACTTGTCGGCAGCGGCTGCGTCGCGGGGCTGGCCCTGCTGGATGCCTC
GCGAGGACGGCCGCTGTATGAGAACCGACTTGACGGCCGGTTGCCCCGCC
CTCCTCCGGCCGCCGGCACAGCTGCAGCAGCAGCGGCAGCAGCAGCAGCA
GCGGCATCAGCAGCAGCAGCGGCAACAGCAGCTGCAGCAGCAACAGCAAC
AGCAGCTGCACGGAAGGATAACAAGGATAACGAGAAGGAACTAATAGGTG
CAAGAGGTGGAGGAGAAGGGCCCGGCCACCGGTTCGGGTTGGTGTCTCCT
TCCGAAGGACAGCGGCTGGTAAGCAACCAAGGCGCGTCCAGTCATTCACT
GCCTCCCTGCTGTTCGGCACCCTTCTCTACCTCGAGGCGTGGCCGCCCTT
TCGATGGTGACCCTCGGTAGAGGGGAGTAGTACACCGACAGATTGCTTGA
ATGATTTGAAACTGAGATATGTCTGTCTATTGGCGACCGCACAAAGTGCT
TCACCATCATCGCCACAACGGAAACCTACCCCCACCTCTGGCAAAGCAGG
AAGGAACCATTGGCCGTCGGTGAAAATCGGTCCTCCTGTGGGAACAACGG
CCTAACAGCTAGTAAGGCACATGACGCGTGGTCAATGGTCTAATAGCCAA
GGCAAGCAAAACATGAGTACGACCCCCCCCTCCGCCCCACGCCACCACCA
CCTCCCTGCCACCGCTGCTTTCATCCTCGTTGACCCGACCTTTGGCGCGC
AAGGTGGCGGCCGTGAAAAGTTTGACGGATGACGATGACGCCCGCTGCCG
CAAGCAAGAAGAGCAGCCCCTGACGTGCATGGGGGTACCGTTCCGGGTAT
TCGGCGGGACCCCCCTCGGCATCTACGCGGTCGGTCCCGGCAGGAGGGTC
GGGTTGATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTGGTTGTAGTCTT
CCGGTATGTCTACGGCGGGCGGTGTTTTTTTTTGTTTTTTGTATTTTATA
TTTACAGAAGGCGCCCGCCACGTTAGAACTTGGCAATTGATACACTCCGG
AGTATATAGCCTATGAACTCTCCAAATGTAAGAACTTGAGCACCGTTCAT
TTGTGAGCTCGGGTTAAGAACCCTAACCCCTACACTATCCCTACCTACAC
TAACATCTTATAGTGACCGTTCGTAGCATGACCCCAGGGATACGGTAAAG
AACCCCAGCCTCGACGAAAAGTAAAATAGAGGTTCGGAAGTGCGGTCGCG
TTCTGTACTGCTGTGGTACATGTGTACGGAAGAAGGGCGGCGGACCGTTT
GCATGCATGATATGTGCAGATAGATTGGTGTGTTGTCGGATCTCTGTTCA
TCGAGGTATCTGTGTGTGCCGTGACTAGGGTACACTGACATTCACGCCGC
GTTCCATCCACGCGTCATTAACCCCCCCCATGGGACAGTCAGGAGAAGAT
GGTAGCCTTGCAGGGGTATACGAAGTTGCCTGAGCAGGCGAGAAGTGATA
TGGACAGGATCAGGAAAGAAATCTTCAAACTTTGGGCTACCTTTGGCAAA
GTAGGAAGGGCCATCGGTGATCGGTCCTGCGGGAAGAAACCCTCCGTCCT
CTCGAGTACGCGCCCCTCCCCCCTTGACCCCCTTCGTATTCCGTCCAACG
CGTTTGGCGCACGCGTGCGTTGCCGAGACAGGCGGCCTCATCTGCCTCAA
CAGGTGGTGGGGGAAGTAGAGAAGTTCGTGGACGACTTCTGGGCAGGCAC
CCAAGGCCGCGCGGTGGGATCGCCACTCCCACCACCACCACCACCACCAC
CCCGATCATCAACACGGCGGTGATGATCACCACTATCATCGTCATCGCTG
AGGGGCGGAACGACTGGCGCTGCTGCTACCGGTGCCTCCGTTGCTGCCGA
TGGAAAAGGCAGTGCCGACTTCTCACGACCGGAGAGGGATCTGCTGCTTC
TGCTGTTTCTGCTGCTTCTGCGGCAGCGACGTCTCGAGGAGATGACGTTC
GCTCGTGCCTAGACGTGAAGGCATTGGGTTGGTTTCCCCCAGGAGCGATG
ATTTGCCGTCGTTTTGCGGGTCTAGTAGCGATCTCGAGGCAGCGGAAGAC
GTGTAGCTCCCCCCCCGTGTGTGTGAAACGTTTGGTAAGCCGGGATGCCA
ATTCAACCCATGGCATATCGACTATATCTGGCATATAGAACACCTGGGTT
GGCACAGCACACGTAGGGATGATGATCCGCTTCTGGTTCGGCCCTGTGAG
ATGTAGACCGGGCCGGGGGATACCCGGCACATCGCTTCGTCCTGGCATTG
CATTGTAGGGATGCGAGGTCTATGGTCTAACGACTTAGGCATGCGTTTTT
ATCCTGAGTACGCCCCCCGGTTTTTTCTTGTTGCCGTCAGAAGGATTTGA
GATTGTTTGGCATGTGGTGGATTCGAGACAGTCGGTGCCAACAAACTGTT
GGCTGGGTGTTGTGTGCCGTGCGCTGTGTAATTAGTCTTGTTGTGCGGTT
TGTTTGTAGTTGTTGTTGTTGTGAGTTGTTTGCTGTAGAATGAGTGGTGA
GTGTTGGGACCCACCGTCGTGATGGTGGTAGCATACTCCGTACGCCCTCT
GCTCGTGTGGGTGTGCGGTAGAGGGGTGACGCAGTAGAGGGTGTGGCCGA
GGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:426825..431780+

>mRNA_Ecto-sp6_S_contig89.17949.1 ID=mRNA_Ecto-sp6_S_contig89.17949.1|Name=mRNA_Ecto-sp6_S_contig89.17949.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:426825..431780+ (Ectocarpus species6 EcLAC_371)
ATGGAGTCTTGTCAGCATCAGATGCTTGGAGCCCCTCTGATCGGCGGCGG
CGGCGGCGGCGGGAGCGGCAGTGCGCCTTACGATGCGCTGTTCCAGGGAC
TTGTCGGCAGCGGCTGCGTCGCGGGGCTGGCCCTGCTGGATGCCTCGCGA
GGACGGCCGCTGTATGAGAACCGACTTGACGGCCGGTTGCCCCGCCCTCC
TCCGGCCGCCGGCACAGCTGCAGCAGCAGCGGCAGCAGCAGCAGCAGCGG
CATCAGCAGCAGCAGCGGCAACAGCAGCTGCAGCAGCAACAGCAACAGCA
GCTGCACGGAAGGATAACAAGGATAACGAGAAGGAACTAATAGGTGCAAG
AGGTGGAGGAGAAGGGCCCGGCCACCGGTTCGGGTTGGTGTCTCCTTCCG
AAGGACAGCGGCTGGTGGCGGCCGTGAAAAGTTTGACGGATGACGATGAC
GCCCGCTGCCGCAAGCAAGAAGAGCAGCCCCTGACGTGCATGGGGGTACC
GTTCCGGGTATTCGGCGGGACCCCCCTCGGCATCTACGCGGTCGGTCCCG
GCAGGAGGGTCGGGTTGATCGTGCGAGCCCTCCCTCGCGTCGGCTTCCTG
GTTGTAGTCTTCCGGCGGCCTCATCTGCCTCAACAGGTGGTGGGGGAAGT
AGAGAAGTTCGTGGACGACTTCTGGGCAGGCACCCAAGGCCGCGCGGTGG
GATCGCCACTCCCACCACCACCACCACCACCACCCCGATCATCAACACGG
CGGTGA
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