mRNA_Ecto-sp6_S_contig89.17917.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17917.1
Unique NamemRNA_Ecto-sp6_S_contig89.17917.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig89.17917.1 vs. uniprot
Match: A0A6H5JLE3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.510e-43
Identity = 90/102 (88.24%), Postives = 91/102 (89.22%), Query Frame = -1 
Query:    1 QMHKAC--DLMTRGTRHRCVHHSHESPYAALIVAMAMTVTATSAGAAGSCVSGAATCTPPFYSSSSRGINTNSLLAFGAVAKPTSRFGSGGGRAVAAKHRVQ 300
            Q+H A   DLMTRGTRHRCVH SHESPYAALIVAMAMTVTATSAG AGSCV GAATCTPP YSSSSR INTNSLLAFGAVAKPTSRF SGGGR VAAKHRVQ
Sbjct:   17 QIHTALHHDLMTRGTRHRCVHQSHESPYAALIVAMAMTVTATSAGPAGSCVRGAATCTPPLYSSSSR-INTNSLLAFGAVAKPTSRFVSGGGREVAAKHRVQ 117
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BLAST of mRNA_Ecto-sp6_S_contig89.17917.1 vs. uniprot
Match: D8LKG7_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.910e-29
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = -1 
Query:    1 MAMTVTATSAGAAGSCVSGAATCTPPFYSSSSRGINTNSLLAFGAVAKPTSRFGSGGGRAVAAKHRVQ 204
            MAMTVTATSAGAAGSCV+GAATCTPPFYSSSSRGINTN LLAFGAVAKPTSRFG+GGGR VAAKHRVQ
Sbjct:    1 MAMTVTATSAGAAGSCVTGAATCTPPFYSSSSRGINTNCLLAFGAVAKPTSRFGAGGGREVAAKHRVQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLE3_9PHAE3.510e-4388.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LKG7_ECTSI6.910e-2994.12Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:122069..122374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350506.8588724-CDS-Ecto-sp6_S_contig89:122068..1223741682350506.8588724-CDS-Ecto-sp6_S_contig89:122068..122374Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 122069..122374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17917.1prot_Ecto-sp6_S_contig89.17917.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 122069..122374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17917.1

>prot_Ecto-sp6_S_contig89.17917.1 ID=prot_Ecto-sp6_S_contig89.17917.1|Name=mRNA_Ecto-sp6_S_contig89.17917.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
LNPVLRCNCTASPGAKPTRRLRDRSKRQQGIRVDAPAAAAVEGRSASCSS
TDTAPCCTSRCCRHRHRHGHYQCGIRRFVAMMHASMSRTTCHQVASFVHL
C*
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mRNA from alignment at Ecto-sp6_S_contig89:122069..122374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17917.1 ID=mRNA_Ecto-sp6_S_contig89.17917.1|Name=mRNA_Ecto-sp6_S_contig89.17917.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:122069..122374+ (Ectocarpus species6 EcLAC_371)
CTGAACCCGGTGCTTCGCTGCAACTGCACGGCCTCCCCCGGAGCCAAACC
TACTCGTCGGCTTCGCGACCGCTCCAAACGCCAGCAAGGAATTCGTGTTG
ATGCCCCTGCTGCTGCTGCTGTAGAAGGGCGGAGTGCAAGTTGCAGCTCC
ACTGACACAGCTCCCTGCTGCACCAGCAGATGTTGCCGTCACCGTCATCG
CCATGGCCACTATCAGTGCGGCATACGGCGATTCGTGGCTATGATGCACG
CATCTATGTCTCGTACCACGTGTCATCAGGTCGCAAGCTTTGTGCATCTG
TGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:122069..122374+

>mRNA_Ecto-sp6_S_contig89.17917.1 ID=mRNA_Ecto-sp6_S_contig89.17917.1|Name=mRNA_Ecto-sp6_S_contig89.17917.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:122069..122374+ (Ectocarpus species6 EcLAC_371)
CTGAACCCGGTGCTTCGCTGCAACTGCACGGCCTCCCCCGGAGCCAAACC
TACTCGTCGGCTTCGCGACCGCTCCAAACGCCAGCAAGGAATTCGTGTTG
ATGCCCCTGCTGCTGCTGCTGTAGAAGGGCGGAGTGCAAGTTGCAGCTCC
ACTGACACAGCTCCCTGCTGCACCAGCAGATGTTGCCGTCACCGTCATCG
CCATGGCCACTATCAGTGCGGCATACGGCGATTCGTGGCTATGATGCACG
CATCTATGTCTCGTACCACGTGTCATCAGGTCGCAAGCTTTGTGCATCTG
TGCTGA
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