mRNA_Ecto-sp6_S_contig84.17618.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17618.1
Unique NamemRNA_Ecto-sp6_S_contig84.17618.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 709 bits (1829), Expect = 1.650e-256
Identity = 343/354 (96.89%), Postives = 347/354 (98.02%), Query Frame = 2 
Query:  263 MVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAPPAPPSLTGRDPAELTVEARERSRLAHSSATRRPGAHACWVTPCLPAPLLVLCGMLVSRAVVGALL 1324
            MVGDSTMSHQYG ICGFMGEREGRRYDPEKAQHGSPGCCMDT+PKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDA+YFGSGLHLLHMYP WPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNV+VVFMTNHAIADERF GEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASV DAHGDFSYSDW G PDIAEYMVYPEGQGLFTVDTYCEEA+LDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAPPAPPSLTGRDPAELTVEARERSRLAHSSATRRPGAHACWVTP LPAPLLVLCGMLVSRAVVGALL
Sbjct:    1 MVGDSTMSHQYGAICGFMGEREGRRYDPEKAQHGSPGCCMDTLPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAYYFGSGLHLLHMYPHWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAPDIAEYMVYPEGQGLFTVDTYCEEAILDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAPPAPPSLTGRDPAELTVEARERSRLAHSSATRRPGAHACWVTPILPAPLLVLCGMLVSRAVVGALL 354
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 526 bits (1356), Expect = 1.810e-184
Identity = 252/335 (75.22%), Postives = 287/335 (85.67%), Query Frame = 2 
Query:   92 MITGGHWKEYLTSEKGNAWFEPWNHVMQAKLDVLASIVEGQQGSSSSSSSEKPFRVLMVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIE 1096
            ++ G  WK YL+ E GNAWF+ WN  MQAKLD+LASI E ++ + +     +PFRVLM+GDSTMSHQ+G ICGFMGEREGRR+DPE  Q  +PGCCMDT+PKED GEGGGGRGLCF++DQFRFLDPKR  RTSVDA+YFGSGLHLLHMYP WPEM+PMEPLRVQSWLNYESLLEGVV+ VR K+G +VKV FMTNHAIADE F GEYK+IRAAYREG GN TIRAECQ ++N QV+ AASV +  GDF YSDW G PDIAEY+ +PEGQGLFTVDTYCEEA+LDRRGSL +SRRARPVMSRLGVP+VDAA+IVEGQGWAS  +DGRHFHK+VPIE
Sbjct:   30 VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTET-----EPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQRSAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRAKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVR-AASVGNP-GDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLHMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.400e-81
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 2 
Query:   92 MITGGHWKEYLTSEKGNAWFEPWNHVMQAKLDVLASIVEGQQGSSSSSSSEKPFRVLMVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQS 586
            ++ G  WK YL+ E GNAWF+ WN  MQAKLD+LASI E ++ + +     +PFRVLM+GDSTMSHQ+G ICGFMGEREGRR+DPE  Q  +PGCCMDT+PKED GEGGGGRGLCF++D FRFLDPKR  RTSVDA+YFGSGLHLLHMYP WPEM+PMEPLRVQS
Sbjct:   30 VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTET-----EPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQGRAPGCCMDTLPKEDGGEGGGGRGLCFQYDHFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS 189
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 7.210e-74
Identity = 122/173 (70.52%), Postives = 131/173 (75.72%), Query Frame = 2 
Query:  176 AKLDVLASIVEGQQGSSSSSSSEKPFRVLMVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVKVVFMTNHAIADE 694
            AKLDVLA++VE QQG       E+PFRVLMVGDSTM HQYG +CGFMGER GRRY+P                     E GGGRGLCFE DQ RFLDPKRA  TSVDA+YFGSGLHLLHM P WPEM PMEPLRVQSWLNYESLLEGVVQAVR KSG NVK++FMTNHAIAD+
Sbjct:   63 AKLDVLAALVENQQGGRR----EQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPR--------------------EEGGGRGLCFELDQLRFLDPKRAGETSVDAYYFGSGLHLLHMLPHWPEMNPMEPLRVQSWLNYESLLEGVVQAVRKKSGQNVKLIFMTNHAIADQ 211
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.860e-71
Identity = 114/143 (79.72%), Postives = 127/143 (88.81%), Query Frame = 2 
Query:  668 MTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIE 1096
            MTNHAIADE F GEYK+IRAAYREG GN TIRAECQ ++N QV+ AASV +  GDF YSDW G PDIAEY+ +PEGQGLFTVDTYCEEA+LDRRGSLQ+SRRARPVMSRLGVP+VDAA+IVEGQGWAS  +DGRHFHK+VPIE
Sbjct:    1 MTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVR-AASVGNP-GDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 2.080e-63
Identity = 137/377 (36.34%), Postives = 197/377 (52.25%), Query Frame = 2 
Query:   77 SRDDAMITGGHWKEYLTSE-KGNAWFEPWNHVMQAKLDVLASIVEGQQGSSSSSS-----SEKPFRVLMVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGG-------------------GGRGLCFEFDQFRFLDPKR-AARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAP 1129
            ++ +  ++G  WK +L+S   G+ WF  WN + Q ++D +A++ E ++    +S      +++PFRV MVGDSTM  Q+GVIC F+ ER G  +D    Q     CC+DT+P+E   EGG                   GGRG+CF     +FL+P + A+  S DA YFG GLHLL        M  ME  R Q+WL YE  LE  V+  R   G   ++VF T+H I D  + G ++++  AYR+G  +  + ++C+ Q          V   +G                           VD YC   ++DR GS  L+RR+RPVMSRLGVP V+   IV+ Q WA+  SDGRH+H +VP+EV + L VL +P
Sbjct:  168 AQPEKYMSGARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAAGHQDE---CCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLL-------PMDNMEGERAQAWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDG--DMGVISKCEGQ----------VRRGYG---------------------------VDAYCRLGLMDRNGSEVLNRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVEVWEFLGVLISP 495
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.640e-38
Identity = 111/348 (31.90%), Postives = 157/348 (45.11%), Query Frame = 2 
Query:   77 SRDDAMITGGHWKEYLTSEKG-NAWFEPWNHVMQAKLDVLASIVE-----GQQGSSSSSSSEKPFRVLMVGDSTMSHQYGVICGFMGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEG------------------GGGRGLCFEFDQFRFLDPKR-AARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSG-------------------------PNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSR 970
            ++ D  ++G  WK +L S  G + WF  WN ++Q ++D LA++ E     G   SS    +++PFRV M+GDSTM  Q+GVIC F+ ER G  +D    Q     CC+DT+P+E   EG                   GGRG+CF     +FL+P    +  S DA YFGSGLHLLHM+        ME  R Q WL YE  LE  V+  R   G                         P    V++      D  + G ++++  AYR+G  +  + ++C+ +     + AA VT                       PEG G   VD YC   ++DR GS  L+R
Sbjct:   90 AQSDKYMSGAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLFDAAGHQDE---CCIDTLPREPAEEGEDANDHGTPALDLHNHTVNGGRGVCFRRSFQKFLEPPEWESLGSPDAVYFGSGLHLLHMHV-------MEAERAQGWLTYERDLESAVETYRAAGGAGFRGQLQESLTIHAHFFSRMHAVSPRSTSVWVATGGSVDSVYQGLFREMVDAYRDG--DVEVISKCEGK---MSQLAAGVTG----------------------PEGYG---VDAYCRLGLMDRNGSEVLNR 397
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Match: D7FP29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.400e-15
Identity = 57/208 (27.40%), Postives = 95/208 (45.67%), Query Frame = 2 
Query:  497 AFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTVDTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVL 1120
            A YFG G+HLLH++P   +     P  + SW NY++LL   +   R +  P++K+V+MT H I + +++GE+K     Y+                    +    +      F            E ++  E      ++  C + +    G   L+ +   VM  +GVP+V A  +VEGQ WA+   DGRHF  + P+E+  L ++L
Sbjct:   75 AMYFGCGMHLLHLFP--VQESADVPRAMLSWENYDTLLSERIGGWR-EVNPDIKLVYMTTHTIDESKYYGEWKTALEGYK-------------------ARDPVFLEPCKLKF------------EEILPSESPLRDDLEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLELFWLFNIL 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJP0_ECTSI1.650e-25696.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI1.810e-18475.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK9_ECTSI1.400e-8171.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI7.210e-7470.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK8_ECTSI1.860e-7179.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U4_ECTSI2.080e-6336.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE6.640e-3831.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP29_ECTSI2.400e-1527.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:746741..755496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1327
Hectar predicted targeting categorysignal peptide
Exons9
Cds size1314
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17618.1prot_Ecto-sp6_S_contig84.17618.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 746741..755483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.3089466-CDS-Ecto-sp6_S_contig84:746740..7469711682350476.3089466-CDS-Ecto-sp6_S_contig84:746740..746971Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 746741..746971 -
1682350476.3183432-CDS-Ecto-sp6_S_contig84:748065..7481921682350476.3183432-CDS-Ecto-sp6_S_contig84:748065..748192Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 748066..748192 -
1682350476.3278089-CDS-Ecto-sp6_S_contig84:749064..7492521682350476.3278089-CDS-Ecto-sp6_S_contig84:749064..749252Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 749065..749252 -
1682350476.338773-CDS-Ecto-sp6_S_contig84:749986..7501101682350476.338773-CDS-Ecto-sp6_S_contig84:749986..750110Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 749987..750110 -
1682350476.3468559-CDS-Ecto-sp6_S_contig84:751262..7513341682350476.3468559-CDS-Ecto-sp6_S_contig84:751262..751334Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 751263..751334 -
1682350476.354847-CDS-Ecto-sp6_S_contig84:752173..7524091682350476.354847-CDS-Ecto-sp6_S_contig84:752173..752409Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 752174..752409 -
1682350476.3626657-CDS-Ecto-sp6_S_contig84:753153..7533431682350476.3626657-CDS-Ecto-sp6_S_contig84:753153..753343Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 753154..753343 -
1682350476.3704786-CDS-Ecto-sp6_S_contig84:754219..7543051682350476.3704786-CDS-Ecto-sp6_S_contig84:754219..754305Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 754220..754305 -
1682350476.3783658-CDS-Ecto-sp6_S_contig84:755423..7554831682350476.3783658-CDS-Ecto-sp6_S_contig84:755423..755483Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 755424..755483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.388976-UTR-Ecto-sp6_S_contig84:755483..7554961682350476.388976-UTR-Ecto-sp6_S_contig84:755483..755496Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 755484..755496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17618.1

>prot_Ecto-sp6_S_contig84.17618.1 ID=prot_Ecto-sp6_S_contig84.17618.1|Name=mRNA_Ecto-sp6_S_contig84.17618.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=438bp
MRPLAGFAPLLLVLGLLKCAVSRDDAMITGGHWKEYLTSEKGNAWFEPWN
HVMQAKLDVLASIVEGQQGSSSSSSSEKPFRVLMVGDSTMSHQYGVICGF
MGEREGRRYDPEKAQHGSPGCCMDTVPKEDEGEGGGGRGLCFEFDQFRFL
DPKRAARTSVDAFYFGSGLHLLHMYPRWPEMYPMEPLRVQSWLNYESLLE
GVVQAVRYKSGPNVKVVFMTNHAIADERFHGEYKDIRAAYREGPGNTTIR
AECQDQNNTQVKQAASVTDAHGDFSYSDWRGTPDIAEYMVYPEGQGLFTV
DTYCEEAMLDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSD
GRHFHKIVPIEVVDLLSVLGAPPAPPSLTGRDPAELTVEARERSRLAHSS
ATRRPGAHACWVTPCLPAPLLVLCGMLVSRAVVGALL*
back to top

mRNA from alignment at Ecto-sp6_S_contig84:746741..755496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17618.1 ID=mRNA_Ecto-sp6_S_contig84.17618.1|Name=mRNA_Ecto-sp6_S_contig84.17618.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8756bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:746741..755496- (Ectocarpus species6 EcLAC_371)
GTGCGAGGGAGGCATGCGGCCGCTGGCTGGGTTTGCGCCACTGCTGCTGG
TTCTGGGCCTGCTGAAATGCGCGGTGAGATGGGGCGATGCGGGGCAATCG
GTTCGGCGGTGATGCAAGGGTGCGGCCGGTGATGTCCACGTCTGTTATTA
CGTAGTAGTTCGATCCATGTTGGTGGTTACAACAGGGTTAGGGTGAGAAC
CTATGTAGTTTGTTTCTTTCTTGGATGATCTACCGTATACGACACAAGAT
AACACACCCCCTGGACCAATTTTCAAAGCTTCATTACTCCATGACGAAGA
TAATGCATAAACGAAACGATACGTTTTCGGAGAGCTCTCGACCAGACGGC
TTCAACGCCGCCGTTTTCGGCGCCGTGACACTTTCTGCTGTTGATAAATC
CAGCTTTGAAAATCAGTCCAAGGGGTGTGTTATCTTGTGTTGTATGCGGT
ATCTCCGTGGAGAGTGCCACACGCCGGAACCTGTCGCTCCCAGGGCTTTT
GGTCACACGTCTAGCCAATAAGAGGGAAGACTCTCTGTCAAACTCTTACT
TCTCGCGGTAATATATTCATAGGCAAGCACCGCAGGGGGGAGGGGGTAGA
ACAAGGGCAATTGTTCCTGTGCTGCCATTCTCTTGTCTGTGTGTCCCGGG
CTACATCGTGTACACACTTCAAGTTTGGTTTGCCGAAACGAGTATAGTGG
GGGGCCCGCTTTTGCGACCCTTACTGTCACAGCGAAACGTGGCCGCTGTT
TAGGGCAGGTCGCTAAACCGAACTACCAATTATGTAGCAGTTATTGTGCA
TGTACCGGGGTGCGGCGGTGCGACGTGATTTTCTGGTCGATAATGCCGAC
TCCCTACTGAAGTAGATGTACTGGCACCCGGAGTTAATGGGACGACAAAG
CAACACACACGCGCGCGCGTGCGGATCTCGTCGTGGGCTACCGTTAGCCT
CTCTCCCATGACACACCCTCATGGAGTCCGGGATCATGGACTTCAGAAGC
GCTTCAGCCGCACGGAGACTGACTGGCGTATTTTCATTGGTCAGCCGGTT
AGCGCTGTCGATGCTAATAACAGAGACGCTCGCGTTTCCTTCTTCGGGAA
GATACCGTGGGCGCTACATGCACGATATCGCTCTGGTTGAATGCACTTGC
CGTGTCATCTAATCCGCCTTTGTGGGCGGCGATCGTGGCAGGTGTCTCGA
GATGACGCGATGATTACGGGGGGGCATTGGAAGGAGTACCTCACAAGCGA
GAAGGGAAATGCCTGGTTCGAACCTTGGTGGGCAAACTGCCAGCTAGCGC
GGCCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGTCA
TGACTGTCGAAATTCGTGCCGATGATAGCCATGAGGATGGTGTTGGAGGG
AGTGATAACAACGATGTTGGTGGTGGCTTGTAGCGGTGTGTTGTTGTTTG
TCTTTTACGTTGTTTTCGGAATTCACGCCAATGATGATGATGATGTTGGG
AGAGGCGAAAACGATGGTGGTGATGAGGACGGTTTTTGGATGAGGTGATT
CTGATGGCCTTGTTTTCGTGTTTGTCGCCGCTGAAACCCGCACCAATGGT
GATATTTGATAGTGTCACTCCTACGGTGGTCGTTGGAGGAAGAGGCGATA
CCGATGACGATGCTGTTGTTGTGGTCGTCTGTCGTTGTTGAAGCTCGAAC
CGGTGATTATGCCTCTACGCCTTCTGCTGTCGTTAGAGGAGACATCGAAA
ACGATGTCCTGTTGAGGTGATGGCGATGCCGATGGTGCTGTTGCTGGAGA
TGATCGCGATGACGAAAAAGGGGCTCGGAATCAATAGCCTCCGTTTCCAG
TACCACAACCAACCGCAGGAACATCCGTTTTGCAACACATGTGTCTGGCG
GAAGTGGACTTGCCATGATTGCCGCTTGCCAAAACCCTTGTATGTTGGTA
TGCACGTACAGTGTGTGGTTGACTAGTACGCAGTAAAAGGCTCCCCTTCA
ATGTGTAAGGTGGCTTGCCTCGCGGGCGCGGCGCAAGATGGCATGGTCAA
GGTTTTTTCACAGGATGTTGTCCTCTGAACTTTCCTAGGAATGAATCGTT
CACATAATGCCAAATGCTTAGCGTTCACACACACACAACATGTCCGTTTC
CAGGAACCACGTGATGCAGGCCAAGCTCGACGTGCTCGCCTCCATCGTGG
AGGGCCAACAGGGGAGCAGCAGCAGCAGCAGTAGCGAGAAGCCCTTCCGT
GTCCTGATGGTCGGGGATAGCACGATGAGCCACCAATACGGTGTGATCTG
CGGCTTCATGGGCGAGAGAGAGGGGCGACGATATGACCCCGAGGTGTGTG
TGTGTTTTTCATTTTTTTTTTTTTTTTAGCGTCGACCGCGCTGACAAATG
AAAAGACGTCAGCGCCAGCGGATGAAATCAAGGTCCCTGGGAGGGGGCCG
GAATTCGAATAATGTGCAATGTTGCGCTGAATGCGAACGCCCAAATGAAT
CTCTCTGCAATTCCTTGCACAGACACACGTGTGTGTTGTGCGTGCACGGC
TTTTGTTATTGGCATTGACCGCGCTACCCGGCCGATCAATCAAGGGATGA
CAAAGCGCTTCCAATGGCCATGATCTGGGACACCGTGAGGGGGCGCAGTC
AACATCTCATCTACCGAGATTGCCGCCCAGTCGAACGTAGTGTCTCTCGT
TCAGGCGTTTCGTGGTCATGCCGGGGGTACGCAGAACGCTCTTTCTCTCC
CTGGGGAAGGCGCCCTCACTTCAACGTCGGCGGTGGATGCCTTCGACATT
TTTTCTCAATTTCGATGTCGTATTGCCATATTGTCGTATTGCAGGCGCAG
GTCAGCTAGATTTGACCTACGTTAGTAAAGTGGTCTTGAGTAGTTCTTGA
GAGCCCGGGCATCGCGTGTTGCGTGTGTTTGCTGCACTCTTAAAATACGC
TGTTGTTTCTCTTTTTCGCGTTTGTCTGCTGCACTCTCAAGAAAGCGCTT
TGTTTCGTGTGTTCAGTTCACGTCATCCTTAGAAACCGCTCTAGTACAAT
CCTTGTTGCGTGTGTCCACTTCACCCTCTTTATCCAGAAAGCGCAACACG
GATCCCCCGGTTGCTGCATGGACACGGTGCCCAAAGAGGACGAGGGAGAA
GGAGGAGGAGGGCGGGGGCTCTGCTTCGAGTTCGACCAGTTCCGCTTCCT
TGACCCCAAGCGAGCGGCCAGGACGTCGGTGGACGCCTTCTACTTCGGCA
GCGGTCTCCACCTGCTGCACATGTACCCCCGCTGGCCGGAAATGTACCCC
ATGGAACCGCTGCGAGTGCAATCGTGAGACATTCGGGTCATACGGTTAGG
GTTTGGTAGGGCTGGGGTTGTTAGGGTTAGGGACAGACCGCATTCTTTCG
GAAGCAAGCTCGTGTAGTATGTTGCGATGAGTGTGTTGTCACAAGGAATC
GTCTGGGAGCTGGAGTATTCCGTTCTCTATGCGAACCGTTCTCTCGACCG
TTCTTTGTTACCTAGAGAGTTGCCTATTTTGGTGCCTCCGCGCCGCGAGC
CCCCGTTGTTTTGTGTTTTTGCACGAAGCCCCTTGGAATGTTGATGATTG
AATGAGGAGTTGTTGGCGGGATGAAAGACGTGAGGCGCAGTGAACGCATG
CACATCGGGGGGCGTAAATCTATCTATCCCATGTCAGTCCCGGATAGACC
TTTAGAAGAGAAGGGAGGCTCGCGGGGGTGGGAAGACGCTAGAGTACGAC
TGACGGTAATCGTTCGGCTGGGGCTGATTTATGCAGATGCCAGTACGGGG
ATGTCTGTGCGGGATGATGGCTGACTCGTTTCGCTAGAGGAGGTGTGTTG
GCATGAGCCACACACGTGCGCAATGCGATTCCGTTCGGCGGAACCGTAAA
AAAAACACACACAACTGTGGCAGTGATTCTACCTGAAGAGGGGGATACCG
CTGTTATTGAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGGCAAA
GGAGTAGGTCCACTGCTCCTGGCTTGGAGATACTCCGGTGCGATATTTAT
TTTGTACGGGATGCCTGGTGAACGAAACTGATGAATTTGAACACTTCGTG
TACCCCCCCCCCTGGCCTCCATGACCGTGCGTTTGTTGCTCCGTGTTTCT
GTTTGCCCGCAGGTGGTTGAACTACGAAAGTCTCCTCGAGGGAGTAGTCC
AAGCTGTCCGGTACAAAAGCGGACCAAACGTGAAGTGAGTCAATCAACCT
CCTAGAAGACTGCCGTAGGTTGCATAAGATATCACACCCCCTGGCCCGAT
TTCCAAACCTCTACTTCTCGGCAGGAAAAGCAGTGACGGAGGCGAAAATG
GCGTCGTTGGAACCGTCTTGTCGAGAGCTTTTCCGACAACGTATCCTTTG
TAATCATCATCCTCTTCACCGTGGAGTGATTAAGCTTTGATAATCGTTCC
GGGGGGTGTGGTATCTTATGCAACACGGTAGCCTTGTCTCGACAGAACAG
GCTGCATTTTGCATGCACACAACGTACTATGAGAATGCGGGCGATCGCAC
ATGTAGCATCGACTCCTGTTGCTCCATTGCTCCACAACCAAAAGTGTAGG
TGCCATTCAATGCCGAAAAGCGTGTGGTCGTTAGAAGGAATTAGTAGTCG
TCGAGAGCTGTCCTTGGACGTGCCTGCGGCAAAGTCAAGGCTTAAGACAA
GAACGAAGCAGTCTGCGATCAAGCTCATGCATTCACTCCTTGACCTTCTC
GTGTCGGAGACTTGTACTTGCTAACGATACCTATCACCCATGTCGGTGGC
AGCCCCCTCTCAAAGATGTGGCGCGGTATGTCGGTCGTGATCGCAACAAC
TCTGAACTGGTACCGTGAAGACCTCAGAATGGTTAGGAGAACAAACGGTG
CATTGCCGTGTTTGTCGCACATCTAGTCTACAATAATGAAGTCCCTACCG
TTTCAGCGTGACCCCGGTTGGTACGCCCGACATGGGCACCGAAAGGTTGG
TAGATTGGCGCCAGAACAGACGGGACAAAGGCACAGCGTCCGGCTCCCGT
TCGGTTTGCCTTTGTTGGTCCCGTACAAACCCGTATCCATCTGTCCTAGG
GCTTGTCCATTTCGATAGGTCGCAGAGTGCCACGGCTTCTTCCCCAGTGT
TTTTCTTTTACTCGAGTACAACACGTTTTCAATAGATTGCCGTGTGCCAC
GGCTTCTCCCGCAACTGTTTATTTGTTTTTACTCGATTACGTATTCAATA
GATTTCAGTGTGCCAAGGATTCTTCCCCAATTTAATTTTTCACTCGAATA
CAATTGAGAATTACGCGCCGTTTTTTTACCCGGTACGATGGCTCCACCCT
TTGCGTTTCGGCCTGGCCTGTCCCTCTCAATCGCAGGGTGGTTTTCATGA
CGAATCACGCCATCGCCGACGAGCGGTTCCACGGAGAATACAAAGACATT
CGCGCCGCCTACCGAGAGGGGCCGGGAAACACTACCATCCGGGCAGAGTG
CCAAGACCAGGTACAGGAGGGGGCCCTGTATAGTGTCGTTATGTGTCCGG
AGATTTTACCGGCGCTATACTGGACTCTGGCACTATTCAGAGTACAGGAG
AGCTTGGCATTTCAGTGTGTGCGAACCGAAAGCACCGGCGGTATACCGGC
ACCCGACACTATTTGACCGGCACTATACAGGGACCACTACTGTAGGTACT
GCATGTGTGGCAACTTGTGCGTTGTTCGATAAAAGGCTAGTCCATTAACT
ACTCAGCCAGCGCTGAATTCTTTATCTAACAGCGTGGGTGAACCCAAAGC
AAAGCAATCGATAGGGTGTGTCTAACGCTGAGCGGTATTTTTTTCTGACG
TCACCTACAACGGTAAAGTCATGCGTTGTTGGGTGGTGTTCACGGATGAC
GTACATAGGAATGGGCTGCGAGACTCGAAGCGTTGGCAGCACAAACCCAC
AGGACGAGTTCTCGTATTTACCCTAGTCAATCCTACGAGATGCAAGCACA
GGCAACACCAGCGGCCTACATCTCGCACACCAACACCAACAACACGGCCC
GAGAGCATCGACATGGCCACACGGCAGCAGCTAGACTACCACCGCCACCA
CCACCACCACTATCACAGCAAAACAGCTTCCACCGAGCAACCCCCAGCAT
AAGGAACATGGCGTTTCGGCACAGTTGAAGAACAAACACATCGTCGGTCT
TCTCCTGCTTGGGCATTCGCTCGCTTGATGCCTCCCCTGCGCAGAACAAC
ACGCAAGTGAAGCAGGCTGCCTCAGTCACAGATGCCCACGGGGACTTTAG
CTACTCCGATTGGCGCGGAACACCCGACATCGCCGAGTACATGGTCTACC
CCGAGGGACAGGGGCTGTTTACCGTGGACACCTACTGCGAGGAGGCCATG
TTGGATCGACGGGGCTCCCTGCAGCTTAGCAGGTTCGTTTGAGGCGGGAG
AAGAAAAAAATGTTTTTGGCTGAGCTTTGGTCGGGAAGATGGGACGGAAA
AATCGGTGGAGTTTGTAGATGTTTTGTGAAGCTTTTCCGTTCAGCCGACT
TACAGCTTGATAGCGCTCGGACCCTCCTTTGCGACCGCTCAGGTTCCTAT
CACGGGTTGATTGTGTCAATAGGGTCTCTCCCGCTTTCTTGGTTGAGTAG
ATAGATACTTTTTTTGCCGACTCTGATGCCAACAACAATTAAGCATGATG
TTGTATAATAGAAGAAGTACGTCACGACGATCGCTTGCTCACGGGCACAG
TCAAGGCACGGCCGTGGAGCCCAACCTCACAGAACGTATCGGGGTCTTCT
CACCCCCGTGCCAGGTGGACGATACCTGTGTCCTACAGAACGCGCCACCA
CGTTAGAGCCTCGTGTTTTGGTCGAGCCTCAGTTATTATCATATACTTGT
GTGAGGGGTACCCCAATGACGACTTCATATGTTTTTGTTGAAGGATTCTG
GGTTTTAGGAGGCTCAAGTTATCAGATTTTGGGTTTTAGGAGGCTCAAGT
TCCTCAAGTCGTGGCGCGTTCTGTCATCGACTAAATCGTTTTTTTGTTGC
ACCCTTGCTGTGCCATGCTGTGCCAAGAGCCCAGCCCGTGTGGAGACTCC
AACCTGTCCCGAGACCCGCGCCCTTACGGACGGTAATAACCGCTTCAAGA
TTTTTCCTGTCTTGGGAGCCCTCCATCCGTATTCGATAGCACACCCTCCT
TTCAGTCCCCCTTGACGCTCCCATGTCCTCAAGCTAGCCACCCACCTTAC
TGCTTGACGCCCACGCCCCTCACCCCACCTACGTCTTTTGCGTCGGAAAT
TCAGGAGAGCCCGGCCGGTGATGTCCCGTCTGGGGGTGCCCCTCGTGGAC
GCGGCTAGGATAGTGGAGGGGCAGGGGTGGGCGTCGAACCCGAGCGATGG
GAGACATTTCCACAAGATCGTGCCGATAGAGGTGCGTGTGTAGAGGCTGC
AGCAGTGGGGGTCCCCATACATATGGCGGTCTGAATAAGGCGGTCGCCCT
GCATGAGGAGGGTGAAATTGGCTGGCATAAGGTTAAAAATCATCGAGTTG
TTCTACGCGTTGAATAAGGCGGCCGCTCCACACAAAGGCGGTCACTATTG
GCTGCCCCGCCACCGCCTCATTCGGGGACCCCCACTGTACCCCCCACTGT
ATGTCAGTATTCATGCACGTCACCCCCTTCAAGGATAGATAGGCACGTGA
TTGTGCCCCCCGACCGACCGTGTTAGCTTTAGAGTGCCACCCTACTGGCG
GTATTTTCTCACCATTTTGTCCTCTGGCGTACTATTCGCGTTGAGTATGG
TTGTTCCACGGAGACATGCTGACCCCACACAGCATGGTACTGCGGTTGTC
ATTGAACGGCCGGCCCAGACAAACTCCAACGACTCAGTATCACCGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCGGTGGTACTCCTCGCAATAGGGAGGAA
CCTATAACGGGTAAAAAAAGACGTGGAAATATGGCGGACTGCGTGTTGTT
TGCCGGAAAGCCGGGGGCTCGCGGAGAGGACTTTGATAAAATAACAATTT
GTCTACCCCGGACGGCAGTTAGTTGCGTTGTAGATCCCGAAAAAGTTGAC
GAGAAGACCCCGCGAGGGTCGTTTGGACGAGTTAGCGCGCGCAGCAGTCG
AGTGAGGTGCAGCAGTGAGATGCCCTACGATAACCGTGCCGGATGATGCT
GCTGTTTTCGTGTCGAAAATATTTAACTCTGGTTGGCAGCGGAATCGAAA
CGGGTTTTACGTTTGGATTTTTCGCCCATTGGTTCCACCGGTCCAGATGA
TGCCCGACACTAAACACGACCTAGAGACAAATTTGTTTCCACTGTTTGTC
GAGCACACACCACCTGCCACCACCGCCATGAACACCGACGTTTTTCTTCT
TGTGTTTTTTCAACAACACACAACCCAAGACCACGAATGAACGAACGCCG
AATGTCTTGTTCATCTGTTTATCAAGAACACACAACCAACTACCGCCACC
GCCGCCACCGCCACCGCCACCTCAGGTGGTCGACCTCCTGAGCGTGCTGG
GCGCGCCGCCGGCGCCGCCGAGCCTGACCGGGCGAGATCCGGCGGAACTT
ACCGTGGAGGCTCGAGAGCGCTCACGGCTGGCTCACTCCTCCGCCACCCG
GCGACCTGGCGCCCACGCGTGTTGGGTGACGCCTTGTTTGCCCGCGCCGC
TGTTGGTCTTGTGTGGTATGCTCGTGTCTCGGGCGGTCGTGGGGGCACTG
CTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:746741..755496-

>mRNA_Ecto-sp6_S_contig84.17618.1 ID=mRNA_Ecto-sp6_S_contig84.17618.1|Name=mRNA_Ecto-sp6_S_contig84.17618.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:746741..755496- (Ectocarpus species6 EcLAC_371)
ATGCGGCCGCTGGCTGGGTTTGCGCCACTGCTGCTGGTTCTGGGCCTGCT
GAAATGCGCGGTGTCTCGAGATGACGCGATGATTACGGGGGGGCATTGGA
AGGAGTACCTCACAAGCGAGAAGGGAAATGCCTGGTTCGAACCTTGGAAC
CACGTGATGCAGGCCAAGCTCGACGTGCTCGCCTCCATCGTGGAGGGCCA
ACAGGGGAGCAGCAGCAGCAGCAGTAGCGAGAAGCCCTTCCGTGTCCTGA
TGGTCGGGGATAGCACGATGAGCCACCAATACGGTGTGATCTGCGGCTTC
ATGGGCGAGAGAGAGGGGCGACGATATGACCCCGAGAAAGCGCAACACGG
ATCCCCCGGTTGCTGCATGGACACGGTGCCCAAAGAGGACGAGGGAGAAG
GAGGAGGAGGGCGGGGGCTCTGCTTCGAGTTCGACCAGTTCCGCTTCCTT
GACCCCAAGCGAGCGGCCAGGACGTCGGTGGACGCCTTCTACTTCGGCAG
CGGTCTCCACCTGCTGCACATGTACCCCCGCTGGCCGGAAATGTACCCCA
TGGAACCGCTGCGAGTGCAATCGTGGTTGAACTACGAAAGTCTCCTCGAG
GGAGTAGTCCAAGCTGTCCGGTACAAAAGCGGACCAAACGTGAAGGTGGT
TTTCATGACGAATCACGCCATCGCCGACGAGCGGTTCCACGGAGAATACA
AAGACATTCGCGCCGCCTACCGAGAGGGGCCGGGAAACACTACCATCCGG
GCAGAGTGCCAAGACCAGAACAACACGCAAGTGAAGCAGGCTGCCTCAGT
CACAGATGCCCACGGGGACTTTAGCTACTCCGATTGGCGCGGAACACCCG
ACATCGCCGAGTACATGGTCTACCCCGAGGGACAGGGGCTGTTTACCGTG
GACACCTACTGCGAGGAGGCCATGTTGGATCGACGGGGCTCCCTGCAGCT
TAGCAGGAGAGCCCGGCCGGTGATGTCCCGTCTGGGGGTGCCCCTCGTGG
ACGCGGCTAGGATAGTGGAGGGGCAGGGGTGGGCGTCGAACCCGAGCGAT
GGGAGACATTTCCACAAGATCGTGCCGATAGAGGTGGTCGACCTCCTGAG
CGTGCTGGGCGCGCCGCCGGCGCCGCCGAGCCTGACCGGGCGAGATCCGG
CGGAACTTACCGTGGAGGCTCGAGAGCGCTCACGGCTGGCTCACTCCTCC
GCCACCCGGCGACCTGGCGCCCACGCGTGTTGGGTGACGCCTTGTTTGCC
CGCGCCGCTGTTGGTCTTGTGTGGTATGCTCGTGTCTCGGGCGGTCGTGG
GGGCACTGCTGTAG
back to top