mRNA_Ecto-sp6_S_contig83.17549.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17549.1
Unique NamemRNA_Ecto-sp6_S_contig83.17549.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI)

HSP 1 Score: 734 bits (1896), Expect = 1.590e-266
Identity = 362/373 (97.05%), Postives = 364/373 (97.59%), Query Frame = 1 
Query:  187 MAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPIREGSAAPFFVSHPEGDEEAAVYKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1305
            MAWKEEDERILFG +TRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPI EGSAAPFFVSHPEGDEEAAV KKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVR FPFNQDRAN EPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ VRPETQGRRGELIETASIYQLSNPG+ECATNRPSIS  AWQELVLDSKFTLCPAGRN ETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL
Sbjct:    1 MAWKEEDERILFGSKTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVDKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-VRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 372
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BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI)

HSP 1 Score: 538 bits (1387), Expect = 4.160e-188
Identity = 280/436 (64.22%), Postives = 327/436 (75.00%), Query Frame = 1 
Query:   16 WSVFVLGTIISLHHWNAAAGSDDPAAAVAAERTPQNVHS-----DRGLGRIDPLQLRQQHAAMAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPIREGSAAPFFVSHP-EGDEEAAVYKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1305
            WS  VL    S  HW A +  DD A         +   S     DRGL  +D  +L+ +H AMAWKEED  IL+ G+T YSVI+VE  HHTSNL R+KERVRAFED  NT VVS+QFA+    A   + SA PFFV HP EG     V K+VR+V+LK+    +   QASHLQASCEDPTETTVL+ISDETC    LP G+PPSCR+NVVRVFPFN+ R +G PR  +LPLGPRDTFPFVS+DRRPLASSRSL FNLQ VRP+T  RR EL++ AS Y+  NP +ECATNRP I+ K WQ+LVLDSKFT+CPAGRN  TFRLWEALE GSIPIVSKLDFT P +G  S  TCGDGD+AWN VAASPF + VSVN+W ELP LLDRL++EPD+YINKLQE+CVAW++ AMTQTYTS+LNFGEGHDLFPQ+GP+F S+
Sbjct:    8 WSAVVLAITSSSRHWVAVSCDDDLAPGRRLSSRTRYSRSELRKTDRGL--VDGHKLQLEHNAMAWKEEDPAILYSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDG-NTTVVSMQFADTLLRA--YDDSAPPFFVGHPAEG-----VDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ-VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQTYTSVLNFGEGHDLFPQDGPLFGSV 432
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BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 1.750e-97
Identity = 168/357 (47.06%), Postives = 227/357 (63.59%), Query Frame = 1 
Query:  238 YSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPIREGSAAPFFVSHPEGDEEAAVYKKVRVVHLKDIGTHVK---PYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1293
            YSVIVV      SNL R+++RV+A     +  V+SV+FA+P P   +R+ +   F V+H +  E     +++R++H  D+    +   P Q SHL+A+CEDPTE T+L+++DETC    LP  +P +C SNV R +P+N+  A  E R  Y+PLGPRD F FVS   R  AS+R +  N   V PET  RR  L E  S YQ  +  +E  A+  P ++   W++L+L S+FT+ P G N ETFR +EALEAGSIPI+SK D+T P    +     CG GD AWNTVAASPFA+ VSVN W ELP+LLDRL  E D ++++LQ +C  WY   M +TY SLL+FG+G DL+PQ GPI
Sbjct:   65 YSVIVVASNPRPSNLFRDRKRVKAH----SRGVISVRFADPVPRDVVRDYA---FGVAHDKRAE-----RRLRMIHTADLVDKDQAPDPNQMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFV-VDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQADCGEWYDALMNRTYASLLHFGDGLDLWPQAGPI 408
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BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.550e-53
Identity = 92/176 (52.27%), Postives = 120/176 (68.18%), Query Frame = 1 
Query:  772 QVRPETQGRRGELIETASIYQLSNPGIEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1293
            +V PET  RR  L E  S YQ  +  +E  A+  P ++   W++L+L S+FT+ P G N ETFR +EALE GSIPI+SK D+T P    +     CG GD AWNTVAASPFA+ VSV+ W +LP+LLDRL  EPD ++++LQ +C AWY   M +TY SLL+FG+G DL+PQ GPI
Sbjct:  167 EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQADCGAWYDALMNRTYASLLDFGDGLDLWPQAGPI 342
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BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.290e-12
Identity = 67/220 (30.45%), Postives = 96/220 (43.64%), Query Frame = 1 
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIE----CATNRPSIST------KAW-------------------QELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSL 1245
            YLPLGPR  F  V          R   FN+  V  ET   R  L       + ++PGIE     ++  P I+       K W                   +E++LDS FTLCP G N ET+RL+EA EAGSIPIV +              + GD    W     + +PF   + V +W  + ++L  L+ +P   + +LQ +  +WY   MT   T++
Sbjct:  296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMM-VTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEVSKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE------------TLSSGDCLNPWRPFKDSGAPF---IWVTDWSTIGEVLKELRADPSR-VQRLQSDLRSWYVSFMTTAITNV 498
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BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-11
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 1 
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNL--------QQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYT 1239
            YLPLGPR+ F  V  +   L   R   FN         ++V  +  G   E   +  ++ +S    +       I+   ++++++DS FTLCP G N E +R++EA EAGSIPIV   ++         +  C    +   T  A PF   V +N+W ELP  L+ + + P E I ++Q + + WYS  MT+  T
Sbjct:  371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSLTSLSRKVLVKELGPSSEKYPSF-VWVVSKWKKQLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEYYR-------SHECEGAFLPLITQGA-PF---VFLNSWTELPAYLEYILQHP-ERIQQMQMDTMEWYSKFMTKVAT 552
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.290e-11
Identity = 69/235 (29.36%), Postives = 108/235 (45.96%), Query Frame = 1 
Query:  619 NVVRVFPFNQDRANGEPRRP-YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-------------------QVRPETQGRRGELIETASIYQLSNPGIECA----TNRP-------SISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNT--VAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAM 1224
            N++ +    Q  +  E +R  YLPL PR  F  V+D+ R   +SR   FN+                    QV+    G   +     S+  L    I  A    TN P       ++    +++++LDS FTL P+G N ETFRL+EA EAGSIPIV   D++         T  G+    W    ++ +PF   V V++W ++  +L+ L  +P   I ++Q++ + WY   M
Sbjct:  181 NIINMTDSKQWSSVVESKRVRYLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDLDKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIV---DYS---------TRSGNCKNPWRPFKMSQAPF---VWVDDWTDIQHILEDLISDPARVI-QMQKDLMEWYHSFM 399
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-8
Identity = 57/200 (28.50%), Postives = 98/200 (49.00%), Query Frame = 1 
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGEL-----IETASIYQLSNPGIECATN---------RPSISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQ 1230
            Y PLGPR  F  V D    + ++R   + +  V   T   R +L      ET ++  L+       T+         +  I+ K ++E++LDSKFTLCP G N E +R++EA EAGS+P++   +  +       N  C +   A+  +  + +PF   V +++W +LP LL+ +      ++ + Q    AWY+  M++
Sbjct:  300 YFPLGPRAEFERV-DQTTGVPAARKRQYAINFVGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEYV------NHKCSN---AFQPLLDSGAPF---VILDSWNDLPQLLEIIHSN-QTFVEEKQRAVRAWYAEYMSK 485
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A7S2KHJ8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHJ8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.340e-8
Identity = 64/209 (30.62%), Postives = 95/209 (45.45%), Query Frame = 1 
Query:  679 YLPLGPR----DTFPFVSDDRRPL---ASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECAT-------NRPS---ISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNF 1254
            YLPLGPR    D +  + +    +   +S R   FN    +  T   R  L +   +   S    E  T       N+ S   + +K++ +++L+S FTL PAG N E FRL+EA+EAGSIP++S LD  +          C D    W     SP    V V +W E    + +L  EP E ++K Q +   WY+  M+       +F
Sbjct:  842 YLPLGPRKDSWDAYQMLMNQNGSVIAASSQRKYAFNAIFTK-STHAGRSILADVLQMDGNSLSSFEQITDTWQPDPNKNSNDLLDSKSYMKVLLESTFTLAPAGHNPECFRLYEAVEAGSIPVIS-LDKDY------KQHKCKDSLSHW---LDSPI---VIVESWNEAIPTMQKLLEEP-EALDKRQADLHVWYNQYMSSAVHDFESF 1035
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Match: A0A7S1IMT8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IMT8_9EUGL)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-8
Identity = 60/207 (28.99%), Postives = 93/207 (44.93%), Query Frame = 1 
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNL--QQVRPETQGRRGELIETASIYQL-SNPGIECATNRPS---------ISTKAWQELVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPF-----AKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLL 1248
            YLP G    FP ++      AS+R   FNL    V  + + +   +IET    QL + P  E      S         +S + ++E++LDS FTL P+G N E +R++E+LEAGSIP+V+                         T  A PF     A  V ++ W +LP L+    R+P +Y  +      AWY+    + Y +++
Sbjct:  179 YLPTGISYKFPLITLAEHIPASARKYVFNLVCSIVTNKVRQKLKNIIETKLKPQLPALPVFEHYVYAWSGNYDNKSGYVSQQRFKEVLLDSVFTLMPSGHNPECYRMYESLEAGSIPVVAMEGL--------------------ETHCAHPFTHFMDAPMVWLDTWDQLPTLMQNYTRDPGKYWAQTAA-VTAWYARFKERIYGTIV 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G272_ECTSI1.590e-26697.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G273_ECTSI4.160e-18864.22Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K309_9PHAE1.750e-9747.06Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
D7FHD8_ECTSI3.550e-5352.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SIR8_9STRA1.290e-1230.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GRG6_9STRA1.130e-1131.28UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltr... [more]
A0A7S2SHX6_9STRA1.290e-1129.36Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2R5G5S0_9STRA1.190e-828.50UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltr... [more]
A0A7S2KHJ8_9STRA1.340e-830.62Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1IMT8_9EUGL1.380e-828.99Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:633680..639348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Stop1
Start1
Seed ortholog score71.6
Seed ortholog evalue1e-09
Seed eggNOG ortholog81824.XP_001744677.1
Preferred nameTMEM5
Model size1308
KEGG koko:K21052
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005886,GO:0005887,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0031224,GO:0031226,GO:0031974,GO:0031981,GO:0034645,GO:0035252,GO:0035268,GO:0035269,GO:0036211,GO:0042285,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0070013,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0120053,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons6
EggNOG free text desc.Transmembrane protein 5
EggNOG OGs28KM0@1,2QT2E@2759,39073@33154
Cds size1308
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17549.1prot_Ecto-sp6_S_contig83.17549.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 633680..639348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350467.764145-CDS-Ecto-sp6_S_contig83:633679..6341801682350467.764145-CDS-Ecto-sp6_S_contig83:633679..634180Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 633680..634180 +
1682350467.7768226-CDS-Ecto-sp6_S_contig83:635815..6359671682350467.7768226-CDS-Ecto-sp6_S_contig83:635815..635967Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 635816..635967 +
1682350467.78667-CDS-Ecto-sp6_S_contig83:636962..6370801682350467.78667-CDS-Ecto-sp6_S_contig83:636962..637080Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 636963..637080 +
1682350467.7963612-CDS-Ecto-sp6_S_contig83:637526..6377381682350467.7963612-CDS-Ecto-sp6_S_contig83:637526..637738Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 637527..637738 +
1682350467.8069434-CDS-Ecto-sp6_S_contig83:638269..6384771682350467.8069434-CDS-Ecto-sp6_S_contig83:638269..638477Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 638270..638477 +
1682350467.8172128-CDS-Ecto-sp6_S_contig83:639231..6393481682350467.8172128-CDS-Ecto-sp6_S_contig83:639231..639348Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 639232..639348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17549.1

>prot_Ecto-sp6_S_contig83.17549.1 ID=prot_Ecto-sp6_S_contig83.17549.1|Name=mRNA_Ecto-sp6_S_contig83.17549.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=436bp
MRARLWSVFVLGTIISLHHWNAAAGSDDPAAAVAAERTPQNVHSDRGLGR
IDPLQLRQQHAAMAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKER
VRAFEDSTNTAVVSVQFANPCPHAPIREGSAAPFFVSHPEGDEEAAVYKK
VRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGI
PPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSR
SLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQE
LVLDSKFTLCPAGRNSETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTT
CGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEEC
VAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL*
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mRNA from alignment at Ecto-sp6_S_contig83:633680..639348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17549.1 ID=mRNA_Ecto-sp6_S_contig83.17549.1|Name=mRNA_Ecto-sp6_S_contig83.17549.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5669bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:633680..639348+ (Ectocarpus species6 EcLAC_371)
ATGAGAGCGCGATTGTGGTCCGTTTTTGTTCTTGGGACTATCATCTCCCT
CCACCATTGGAACGCTGCTGCGGGTTCGGACGACCCTGCTGCTGCTGTTG
CCGCTGAACGGACCCCCCAGAATGTCCATTCCGATCGGGGCTTGGGACGC
ATTGATCCGCTCCAGCTGCGGCAGCAGCACGCGGCCATGGCGTGGAAGGA
GGAGGACGAACGCATCCTCTTCGGCGGCAGGACTAGGTACTCCGTCATCG
TGGTCGAGGTGGAGCATCACACGTCGAACCTGGCTCGAGAGAAGGAGAGA
GTGAGAGCCTTCGAGGACAGCACCAACACCGCGGTGGTGTCGGTGCAGTT
TGCAAATCCCTGCCCGCACGCACCGATAAGGGAGGGCTCGGCCGCTCCTT
TCTTCGTGAGTCACCCGGAGGGAGACGAAGAAGCGGCAGTGTACAAGAAA
GTGCGGGTGGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTATCA
GGTGTGGGCAGTCAAGGAAGGCAATTTGTACAGGCTGCTGACCGAGACAC
CACACATACATGTATGTGCCACGCTGTGGCCTGACTAATAATGTACAATC
TACACGCTTTGTGTCGTCTAGCGAACGCGCCCCGTTGCCCATCGACTTAA
GGTTAACATCTACTATCTTCCCCAAACATGGTGCGTACCATGCGTATGTA
CAATGCATGCCCAATATTTATGCATACTTGGGGTTGCATACTTTGTTGGA
GATTGCTTTTCGAAATACAAAAGCCTCCCCCCCCCGCCTTCAGGGGGTTA
GGGTTGAGGCTTCCATCCTGTTTTTTTTTTTCATGCCTTGGTCCTCCACA
CCGTTGGAAAGACACTCCACGTGGTCGTTTTCTATGATAACATGCTTTCT
GTGGCAGATACCAACAATAGATTCGACAGAGGTAGGAGTAAACCGAGTTC
TGGGCGTATTCTGCCTTCCGCACACGGTGTGTGAGGTTACCCACCAGGAG
TCTGTCCGATGCAATATTCTCAACTATTTTCCACCAACAGCAGGACCCGT
CATCGAAGGATTAGCCCGATTAGTTAGTCCGATCAGGCATGCTGCCGAAG
GCGACACACCTCAGGCTTGTGGACAAGTTGAGGCAAAAACTGAGGCATTG
CCTGAGACATCAAATTCCATGCCTGTGAGGTGTCTGAAATGCTACAGCAG
TAAAAAGACAAGGCGGGTGCACCGAGTCCGCGATCAAGTTTTGGCCGGCC
GAGGTTGGGTTCTTGGTTCCTACGGACATGCTACTAAGCAGAGTACGAAT
GGCCGCTATGTTGTACTTCAAGCAGGCTGTAGTTTTGGGGTCTTAACCGA
GCTCACAAGTGGTGCTCAAGTTTTTAGGTTTTGAAGTTTTCGAGGCTAAA
TCATTTTTTTTTCATGAACTGCCAAAGTTCAGTGCGGGCGCTAGCTGTCT
GTGGTTCTAATGGGAATTTGCACATTTGATGATATTTTGTGTGGTTGGCC
CCTTTCATCAGTGGTCCACGCAAGACCGTACACAGTTTTGTCCCAGAGAG
GGGTGGCTATATGGGTACACCCGCTCTTGTCTGTTTCCCCATGAACAGCT
TGTTCGAACTTGAAAACAACGACGCCGTCGATGTTCAGTTTGGACAATCT
CTTTACCGACGGGTTGGCTCATTCTTAGCCTGTCCATGGGTACGTATTGT
TGTACCTGAGCATGGACTGTAACTCGATACAGTAGCAGAGGGTAGAGAGA
AAACATTTTGTGGCACGTTTTCAATTTGAAGGCAATCAATATATCCCTCA
TGCAACGGAAGGTGCCCCAATTTCTTCTCAAGTCTCTCAACGCGAAAAGA
TCGATATATTTCAGCCTGAAGTGGACACTGACACAAATGAACGTACGACG
CGATAAGTAATCCGACGAGCTAGCTGGATGAGCCACAACTAAAATTCGAA
ATCGACATTTGACGGTAGAAAAATATGGGTTGGTTTCTCATCTGAGGAAC
CCGAATAAGAGAAGATTCGGGGCCCTGGTTGCGTGTCATCCCTACCGTTG
TGTACAACGGCAACAGCAGCAGCGACATCTGTCAACGTTTCGCGCTTGTG
TCTTTTGCGATTGGGCGTCGTCGTGTGTTGTTCCAGGCGTCTCACCTGCA
GGCCTCTTGCGAGGACCCGACTGAGACGACAGTGCTCATCATCTCCGACG
AGACTTGCAGGACGTCCGGTCTCCCGGTGGGGATACCGCCCTCGTGCCGG
TCCAACGTCGTTCGGGTGTTTCCCTTCAACCAGGACAGGTTAGGTTGTCC
TGCTGCGTAGCGCATCTCTATGCCAGACGAGTAAGCCTTTTGTGTATCGC
GGTGCGTGTACTGTACTGACGCCACAAGAAACGGGTGCAGAAAGGTAAAA
GCCACAAGTCTTCTTGCTTGCTCCCCACTTCTCTGGCCCTCGTGCTCTAG
TTGGTTTCACGCAGCGCAACGGAGGAGTACGTCTCTCTCCCTCCCACCCA
CCCCTTTCCCCCTTTTTTCTCGCCCTACCCGGCCCTTCCTGTCGCTTTCT
CTTAGAGACCAAATGTTCTTGGTGAGTGGCGGAGACGCTGCCGTTTGTTT
CTTGTTTTGCATGCGGTGCACTTGCACTGGGATCCCAGAGCAGTGAAGAG
TACGTGTGTGCCCTGTTTCGGGGTATGACTTCCTTGTCACCGATTCAAGT
GTCATATTTACCGATAGGGGGATGGTGGATAGGTAGCACACCTATGGTTC
ATGTGAAGTGTGAATTGAACTGTGTACAGGACAATAGCAACATTTACGCT
ATTGTCAAGAGAACGGTTGTGTACCAGAATTCGAGAGGTAAGGGTATGGA
CTCGTGGTCTCCGATCGATGGCCGTTACTGTCGCGAGTTTTGCTGAGCCG
TCGCTTGAACTATAGTGCCGCAAGCGCCGACCATTTTCACACATGAAGGA
TGAGATGAACTCATTGAACTCATGAGTCCATCGTCGTCAACCCCAAGGCA
AGCTGATGGTTGAAGGCACCCACCCACCCACCCACCAACTGCCAATCGAC
CAATCTACGCAAAGCGTATGAGCCAATGGCGCCGCTTGTTACCCTCTTAA
CTAACGAGTCCAAAATGTTCCAACGTGTCAACCGAGTTCCCTCTTGGAAC
GAGTGCAATGTATGCCATCCACTTCAACTAAGCCGCAGGTTGCAGCAGAC
ATGTTTTGTACGCAAAATGGTCAACAAATAGCACTCCCTGTTGTTCCTTT
TCCCCCTCAACCACGGTTGTTTTTGCCGTGAAGAGCGAACGGAGAGCCGA
GGAGGCCGTACTTGCCACTGGGGCCGCGGGACACGTTCCCCTTCGTCAGC
GACGACCGTCGACCTCTCGCTTCAAGCAGATCGTTGTTTTTCAACCTACA
GGTGTGGTGTGGGTGTAAAATACAGTAACTGATGTGTGTCGCGGCTTGCT
TTCGCTTCGGAGAGAGCGAGCGCAAGCGTTGTTCAACGTGCAGGGATCGT
ATGCCGCATTGTTCAGCGTCGGGTGGTGTTGTTGCATTGCACTTTCAACA
CTTCCGGTGTAGTTTTGACGCGTTTTTTCCGCTTCGGAGAGAGACCACCA
GGAGCAAGCTTGCAGAGAACATACAAATCCCGGTCCCTGCACAGCAGTAA
GGCCCTGAAGAGTGCGCGGGGCTGACATCGTGCGGTCAGGTTCTCTGGGT
GATATTGCGGGGGCCCCTAGCAGTAGTAGTGCGGTTTGGCCGTGTTGTCA
GCGATTCCTTCGACAAAGGAAACCATCGCGGGCCCACCTACCATCGCCCG
TAACAGACGAAGCAGCTCCGCGCGCGCCCGAATACCGCTTCGCCAAGCAG
GTCAGACCTGAAACGCAGGGCAGGAGGGGGGAGCTCATAGAGACCGCCAG
CATCTACCAGTTGAGCAACCCAGGCATCGAGTGCGCCACCAACAGGCCGA
GCATCAGCACGAAAGCGTGGCAGGAGCTGGTGCTCGACTCGAAGTTCACC
CTTTGTCCCGCGGGGCGCAACTCCGAGACGTTTCGCCTGTGGGAGGCCCT
GGAGGCCGGGTAAGCATGCCGTGCCGCTTGATGTGAACTGGTCTCCGTTC
TTGTCCGTCACGTGTTTCGTCAAGCTTTTACGGCGTCCGTCGCTCGCAGG
TGCTGCCTACGTATTCAGATCGCAGCACCACTTATGCAGTGATGAACGTG
AGCCTGCAAAATCCAAATCTAAGAGCTTGACATGTGTGCTCAGTCAAGAA
TCCTATAATAAAACCTATATATTCGCCGTGGGGGTACATGTAGTCTACAG
TACCCCACGGAAGAAAATGAGAAACGAGTCTCGGCAATAATGAGAGGTTC
TGGAGAGTGAGCGCGTTCTGTACACCTGCCGTTCCCTCCTCGCCTGATGA
GAGGTCCAATCACGCTCCGCGCGGGTTTCGGTTTTGAACCAGATGGTGCT
GCGGCTTTTACGTGCGTTTAGAGTGGAAGTAGCTCTGCGCAAACTGCTGT
CCCAGAGGACGCGCTCGCTGCCACACTCAAATCGCTTAGTAAGTACCGAT
CGGGTCTGCATGCGCCCTCTCTATCGTGTTCGCTGGTCAGGTCGATACCC
ATCGTTTCGAAGCTTGACTTCACGCATCCGGTGGTGGGCACCAAGTCCAA
CACCACCTGCGGGGACGGGGACATCGCCTGGAACACCGTGGCCGCTTCTC
CCTTCGCGAAGCAGGTCTCGGTGAATAACTGGCTCGAGCTGCCCGACCTT
CTAGACCGACTGCAGCGGGAGCCCGACGAGTACATCAACAAGCTCCAGGT
ACTTACCGCCCCCCAGATCAACAGCAAGTACGTTCATGACGCAAAAACGA
TGTACCTGAGGTGCAGAATCACACACAGACACAGGCTGGGCCTTTGTGTC
CAGCCTCTCAGCCTCTTCCATCACAGGCATACAGAGGTTGGACCGCATGG
AAGTCATGGAGAATACGGAGGAGATGGTGTGAAAGAAAGCAAAAGTTCTA
TCCCAGATGATGGTCTTCCACACAGACCAAACGCCGGAGGTACAGTGAAC
TGCCCGTAATATAGCAATGGTATTAGCTATGGGGGTAGCGAACACCAAGA
GAAAAGAACAAACAACGATACGCCGAGGGAGCCAGAAAATACCACAACAA
GTAGAAACCTTTGTACAGCAGTAGACACGTGCGTTGCCCTTCATCTTGGA
CCGCGTCTGTTCTTTCAACCGGAGCGCTACTTAGCCTCCCACCTGACCCC
TCCCAGATCATGGCCTTTCCCGTTGTTAGCTTCACCGAGGCGGACGTTGT
TTGATTGGTCGACCTGTTGGGGCGGTGGATGCTAGATACTGAAACATCAA
CGTACACACGTTGGGCGAACCAGACGTTCCTTTCAGCACTTCCTTCCCCA
ACAAGACGTCGCCAAAGCGTCGTCCAAATCAACCCTGTATTTTACTTCTA
TATCTGTATTTTGGACGTTGTGACACACACACCTAGTCTTTAGGTGTATG
GCGTAGTAAATGTGCTGGTTGCGTTTCCGGTCAAACCTCTCCCCTCTCGC
AGGAGGAGTGTGTGGCGTGGTACTCTATGGCGATGACGCAGACGTACACA
AGCCTGCTCAACTTCGGGGAAGGGCACGACCTGTTCCCCCAGGAAGGACC
AATCTTCGACAGCCTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:633680..639348+

>mRNA_Ecto-sp6_S_contig83.17549.1 ID=mRNA_Ecto-sp6_S_contig83.17549.1|Name=mRNA_Ecto-sp6_S_contig83.17549.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:633680..639348+ (Ectocarpus species6 EcLAC_371)
ATGAGAGCGCGATTGTGGTCCGTTTTTGTTCTTGGGACTATCATCTCCCT
CCACCATTGGAACGCTGCTGCGGGTTCGGACGACCCTGCTGCTGCTGTTG
CCGCTGAACGGACCCCCCAGAATGTCCATTCCGATCGGGGCTTGGGACGC
ATTGATCCGCTCCAGCTGCGGCAGCAGCACGCGGCCATGGCGTGGAAGGA
GGAGGACGAACGCATCCTCTTCGGCGGCAGGACTAGGTACTCCGTCATCG
TGGTCGAGGTGGAGCATCACACGTCGAACCTGGCTCGAGAGAAGGAGAGA
GTGAGAGCCTTCGAGGACAGCACCAACACCGCGGTGGTGTCGGTGCAGTT
TGCAAATCCCTGCCCGCACGCACCGATAAGGGAGGGCTCGGCCGCTCCTT
TCTTCGTGAGTCACCCGGAGGGAGACGAAGAAGCGGCAGTGTACAAGAAA
GTGCGGGTGGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTATCA
GGCGTCTCACCTGCAGGCCTCTTGCGAGGACCCGACTGAGACGACAGTGC
TCATCATCTCCGACGAGACTTGCAGGACGTCCGGTCTCCCGGTGGGGATA
CCGCCCTCGTGCCGGTCCAACGTCGTTCGGGTGTTTCCCTTCAACCAGGA
CAGAGCGAACGGAGAGCCGAGGAGGCCGTACTTGCCACTGGGGCCGCGGG
ACACGTTCCCCTTCGTCAGCGACGACCGTCGACCTCTCGCTTCAAGCAGA
TCGTTGTTTTTCAACCTACAGCAGGTCAGACCTGAAACGCAGGGCAGGAG
GGGGGAGCTCATAGAGACCGCCAGCATCTACCAGTTGAGCAACCCAGGCA
TCGAGTGCGCCACCAACAGGCCGAGCATCAGCACGAAAGCGTGGCAGGAG
CTGGTGCTCGACTCGAAGTTCACCCTTTGTCCCGCGGGGCGCAACTCCGA
GACGTTTCGCCTGTGGGAGGCCCTGGAGGCCGGGTCGATACCCATCGTTT
CGAAGCTTGACTTCACGCATCCGGTGGTGGGCACCAAGTCCAACACCACC
TGCGGGGACGGGGACATCGCCTGGAACACCGTGGCCGCTTCTCCCTTCGC
GAAGCAGGTCTCGGTGAATAACTGGCTCGAGCTGCCCGACCTTCTAGACC
GACTGCAGCGGGAGCCCGACGAGTACATCAACAAGCTCCAGGAGGAGTGT
GTGGCGTGGTACTCTATGGCGATGACGCAGACGTACACAAGCCTGCTCAA
CTTCGGGGAAGGGCACGACCTGTTCCCCCAGGAAGGACCAATCTTCGACA
GCCTTTAA
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