mRNA_Ecto-sp6_S_contig83.17548.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17548.1
Unique NamemRNA_Ecto-sp6_S_contig83.17548.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: D7G272_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G272_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 1.170e-268
Identity = 364/373 (97.59%), Postives = 366/373 (98.12%), Query Frame = 1
Query:  187 MAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVYKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1305
            MAWKEEDERILFG +TRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAV KKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVR FPFNQDRAN EPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ VRPETQGRRGELIETASIYQLSNPG+ECATNRPSIS  AWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL
Sbjct:    1 MAWKEEDERILFGSKTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVDKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRAFPFNQDRANEEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-VRPETQGRRGELIETASIYQLSNPGLECATNRPSISKTAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 372          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: D7G273_ECTSI (Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G273_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 1.260e-189
Identity = 281/436 (64.45%), Postives = 328/436 (75.23%), Query Frame = 1
Query:   16 WSVFVLGTIISLHHWNAAAGSDDPAAAVAAERTPQNVHS-----DRGLGRIDSLQLRQQHAAMAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHP-EGDEEAAVYKKVRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL 1305
            WS  VL    S  HW A +  DD A         +   S     DRGL  +D  +L+ +H AMAWKEED  IL+ G+T YSVI+VE  HHTSNL R+KERVRAFED  NT VVS+QFA+    A   + SA PFFV HP EG     V K+VR+V+LK+    +   QASHLQASCEDPTETTVL+ISDETC    LP G+PPSCR+NVVRVFPFN+ R +G PR  +LPLGPRDTFPFVS+DRRPLASSRSL FNLQ VRP+T  RR EL++ AS Y+  NP +ECATNRP I+ K WQ+LVLDSKFT+CPAGRNP TFRLWEALE GSIPIVSKLDFT P +G  S  TCGDGD+AWN VAASPF + VSVN+W ELP LLDRL++EPD+YINKLQE+CVAW++ AMTQTYTS+LNFGEGHDLFPQ+GP+F S+
Sbjct:    8 WSAVVLAITSSSRHWVAVSCDDDLAPGRRLSSRTRYSRSELRKTDRGL--VDGHKLQLEHNAMAWKEEDPAILYSGKTTYSVIIVERLHHTSNLIRDKERVRAFEDG-NTTVVSMQFADTLLRA--YDDSAPPFFVGHPAEG-----VDKRVRLVYLKEFWNKINDNQASHLQASCEDPTETTVLVISDETCELPELPPGLPPSCRANVVRVFPFNKPRTDGLPRNAFLPLGPRDTFPFVSEDRRPLASSRSLLFNLQ-VRPDTSDRRAELVDIASQYESDNPDLECATNRPHINPKEWQDLVLDSKFTICPAGRNPGTFRLWEALEGGSIPIVSKLDFTQPALGALSTQTCGDGDVAWNIVAASPFVEAVSVNDWHELPALLDRLRQEPDDYINKLQEDCVAWHASAMTQTYTSVLNFGEGHDLFPQDGPLFGSV 432          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A6H5K309_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K309_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 6.190e-98
Identity = 168/357 (47.06%), Postives = 227/357 (63.59%), Query Frame = 1
Query:  238 YSVIVVEVEHHTSNLAREKERVRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVYKKVRVVHLKDIGTHVK---PYQASHLQASCEDPTETTVLIISDETCRTSGLPVGIPPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1293
            YSVIVV      SNL R+++RV+A     +  V+SV+FA+P P   + + +   F V+H +  E     +++R++H  D+    +   P Q SHL+A+CEDPTE T+L+++DETC    LP  +P +C SNV R +P+N+  A  E R  Y+PLGPRD F FVS   R  AS+R +  N   V PET  RR  L E  S YQ  +  +E  A+  P ++   W++L+L S+FT+ P G NPETFR +EALEAGSIPI+SK D+T P    +     CG GD AWNTVAASPFA+ VSVN W ELP+LLDRL  E D ++++LQ +C  WY   M +TY SLL+FG+G DL+PQ GPI
Sbjct:   65 YSVIVVASNPRPSNLFRDRKRVKAH----SRGVISVRFADPVPRDVVRDYA---FGVAHDKRAE-----RRLRMIHTADLVDKDQAPDPNQMSHLKAACEDPTERTLLLVTDETCLNLYLPTKLPGACWSNVARNYPYNRPSAEQEQRNAYIPLGPRDNFAFVSASERSPASTRPVLLNFV-VDPETSSRRAHLAEVVSDYQALHTDLEIYASTTPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEAGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFAQAVSVNTWDELPELLDRLDAETDSFLDRLQADCGEWYDALMNRTYASLLHFGDGLDLWPQAGPI 408          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: D7FHD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.680e-54
Identity = 93/176 (52.84%), Postives = 121/176 (68.75%), Query Frame = 1
Query:  772 QVRPETQGRRGELIETASIYQLSNPGIEC-ATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNT-TCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNFGEGHDLFPQEGPI 1293
            +V PET  RR  L E  S YQ  +  +E  A+  P ++   W++L+L S+FT+ P G NPETFR +EALE GSIPI+SK D+T P    +     CG GD AWNTVAASPFA+ VSV+ W +LP+LLDRL  EPD ++++LQ +C AWY   M +TY SLL+FG+G DL+PQ GPI
Sbjct:  167 EVDPETSSRRARLAEVVSDYQALHADLEIYASTAPDLNASQWRDLLLRSRFTVSPGGHNPETFRTFEALEGGSIPIISKSDYTDPAFHKEIRVEACGTGDAAWNTVAASPFARAVSVDTWEDLPELLDRLHAEPDSFLDRLQADCGAWYDALMNRTYASLLDFGDGLDLWPQAGPI 342          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A7S2SIR8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIR8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.620e-14
Identity = 68/220 (30.91%), Postives = 97/220 (44.09%), Query Frame = 1
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIE----CATNRPSIST------KAW-------------------QELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSL 1245
            YLPLGPR  F  V          R   FN+  V  ET   R  L       + ++PGIE     ++  P I+       K W                   +E++LDS FTLCP G NPET+RL+EA EAGSIPIV +              + GD    W     + +PF   + V +W  + ++L  L+ +P   + +LQ +  +WY   MT   T++
Sbjct:  296 YLPLGPRSEFQAVKAQDVKQPPKRQYLFNMM-VTLETNHNRTRLHWAVMRLKWADPGIEEVKSSSSTLPPITACFIHNAKRWSGSLPSEVSKDKAMPAGHYREVLLDSVFTLCPNGHNPETYRLFEAAEAGSIPIVEE------------TLSSGDCLNPWRPFKDSGAPF---IWVTDWSTIGEVLKELRADPSR-VQRLQSDLRSWYVSFMTTAITNV 498          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A2R5GRG6_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRG6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.630e-13
Identity = 62/195 (31.79%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNL--------QQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYT 1239
            YLPLGPR+ F  V  +   L   R   FN         ++V  +  G   E   +  ++ +S    +       I+   ++++++DS FTLCP G NPE +R++EA EAGSIPIV   ++         +  C    +   T  A PF   V +N+W ELP  L+ + + P E I ++Q + + WYS  MT+  T
Sbjct:  371 YLPLGPREEFKRVYANDVRLVRERKYKFNFMGSLTSLSRKVLVKELGPSSEKYPSF-VWVVSKWKKQLTRANGYITPVEYKQILVDSVFTLCPQGHNPEAYRIYEACEAGSIPIVVLDEYYR-------SHECEGAFLPLITQGA-PF---VFLNSWTELPAYLEYILQHP-ERIQQMQMDTMEWYSKFMTKVAT 552          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A7S2SHX6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHX6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.960e-13
Identity = 70/235 (29.79%), Postives = 109/235 (46.38%), Query Frame = 1
Query:  619 NVVRVFPFNQDRANGEPRRP-YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQ-------------------QVRPETQGRRGELIETASIYQLSNPGIECA----TNRP-------SISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNT--VAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAM 1224
            N++ +    Q  +  E +R  YLPL PR  F  V+D+ R   +SR   FN+                    QV+    G   +     S+  L    I  A    TN P       ++    +++++LDS FTL P+G NPETFRL+EA EAGSIPIV   D++         T  G+    W    ++ +PF   V V++W ++  +L+ L  +P   I ++Q++ + WY   M
Sbjct:  181 NIINMTDSKQWSSVVESKRVRYLPLSPRFEFEMVTDEERKPVTSRKYLFNMMMSLSTNQIRIDLDKKVKELQVQYPGGGTNADSASGGSLPGLGQSFIHNAMTWQTNLPKEVIDGQAMPADEYRQVLLDSVFTLSPSGHNPETFRLFEAAEAGSIPIV---DYS---------TRSGNCKNPWRPFKMSQAPF---VWVDDWTDIQHILEDLISDPARVI-QMQKDLMEWYHSFM 399          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A2R5G5S0_9STRA (UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.250e-10
Identity = 58/200 (29.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNLQQVRPETQGRRGEL-----IETASIYQLSNPGIECATN---------RPSISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTV--AASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQ 1230
            Y PLGPR  F  V D    + ++R   + +  V   T   R +L      ET ++  L+       T+         +  I+ K ++E++LDSKFTLCP G NPE +R++EA EAGS+P++   +  +       N  C +   A+  +  + +PF   V +++W +LP LL+ +      ++ + Q    AWY+  M++
Sbjct:  300 YFPLGPRAEFERV-DQTTGVPAARKRQYAINFVGSPTSIPRRKLRDYFQSETWTMNPLAKSSYIHVTDTWTQTVSVEKGYITPKQYREVLLDSKFTLCPMGHNPEAYRIYEACEAGSVPVLVTKEEEYV------NHKCSN---AFQPLLDSGAPF---VILDSWNDLPQLLEIIHSN-QTFVEEKQRAVRAWYAEYMSK 485          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A7S1IMT8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IMT8_9EUGL)

HSP 1 Score: 70.9 bits (172), Expect = 1.020e-9
Identity = 61/207 (29.47%), Postives = 94/207 (45.41%), Query Frame = 1
Query:  679 YLPLGPRDTFPFVSDDRRPLASSRSLFFNL--QQVRPETQGRRGELIETASIYQL-SNPGIECATNRPS---------ISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPF-----AKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLL 1248
            YLP G    FP ++      AS+R   FNL    V  + + +   +IET    QL + P  E      S         +S + ++E++LDS FTL P+G NPE +R++E+LEAGSIP+V+                         T  A PF     A  V ++ W +LP L+    R+P +Y  +      AWY+    + Y +++
Sbjct:  179 YLPTGISYKFPLITLAEHIPASARKYVFNLVCSIVTNKVRQKLKNIIETKLKPQLPALPVFEHYVYAWSGNYDNKSGYVSQQRFKEVLLDSVFTLMPSGHNPECYRMYESLEAGSIPVVAMEGL--------------------ETHCAHPFTHFMDAPMVWLDTWDQLPTLMQNYTRDPGKYWAQTAA-VTAWYARFKERIYGTIV 364          
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Match: A0A7S2KHJ8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHJ8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-9
Identity = 65/209 (31.10%), Postives = 96/209 (45.93%), Query Frame = 1
Query:  679 YLPLGPR----DTFPFVSDDRRPL---ASSRSLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECAT-------NRPS---ISTKAWQELVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTTCGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEECVAWYSMAMTQTYTSLLNF 1254
            YLPLGPR    D +  + +    +   +S R   FN    +  T   R  L +   +   S    E  T       N+ S   + +K++ +++L+S FTL PAG NPE FRL+EA+EAGSIP++S LD  +          C D    W     SP    V V +W E    + +L  EP E ++K Q +   WY+  M+       +F
Sbjct:  842 YLPLGPRKDSWDAYQMLMNQNGSVIAASSQRKYAFNAIFTK-STHAGRSILADVLQMDGNSLSSFEQITDTWQPDPNKNSNDLLDSKSYMKVLLESTFTLAPAGHNPECFRLYEAVEAGSIPVIS-LDKDY------KQHKCKDSLSHW---LDSPI---VIVESWNEAIPTMQKLLEEP-EALDKRQADLHVWYNQYMSSAVHDFESF 1035          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G272_ECTSI1.170e-26897.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G273_ECTSI1.260e-18964.45Transmembrane protein 5 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K309_9PHAE6.190e-9847.06Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
D7FHD8_ECTSI1.680e-5452.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SIR8_9STRA9.620e-1430.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GRG6_9STRA8.630e-1331.79UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltr... [more]
A0A7S2SHX6_9STRA9.960e-1329.79Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A2R5G5S0_9STRA9.250e-1029.00UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltr... [more]
A0A7S1IMT8_9EUGL1.020e-929.47Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2KHJ8_9STRA1.060e-931.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:620918..626521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Stop1
Start1
Seed ortholog score71.2
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog81824.XP_001744677.1
Preferred nameTMEM5
Model size1308
KEGG koko:K21052
KEGG Pathwayko00515,ko01100,map00515,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005886,GO:0005887,GO:0006464,GO:0006486,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0031224,GO:0031226,GO:0031974,GO:0031981,GO:0034645,GO:0035252,GO:0035268,GO:0035269,GO:0036211,GO:0042285,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0070013,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0120053,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons6
EggNOG free text desc.Transmembrane protein 5
EggNOG OGs28KM0@1,2QT2E@2759,39073@33154
Cds size1308
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17548.1prot_Ecto-sp6_S_contig83.17548.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 620918..626521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350467.6802309-CDS-Ecto-sp6_S_contig83:620917..6214181682350467.6802309-CDS-Ecto-sp6_S_contig83:620917..621418Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 620918..621418 +
1682350467.6924088-CDS-Ecto-sp6_S_contig83:623023..6231751682350467.6924088-CDS-Ecto-sp6_S_contig83:623023..623175Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 623024..623175 +
1682350467.7025006-CDS-Ecto-sp6_S_contig83:624171..6242891682350467.7025006-CDS-Ecto-sp6_S_contig83:624171..624289Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 624172..624289 +
1682350467.7143998-CDS-Ecto-sp6_S_contig83:624735..6249471682350467.7143998-CDS-Ecto-sp6_S_contig83:624735..624947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 624736..624947 +
1682350467.7229223-CDS-Ecto-sp6_S_contig83:625461..6256691682350467.7229223-CDS-Ecto-sp6_S_contig83:625461..625669Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 625462..625669 +
1682350467.7328892-CDS-Ecto-sp6_S_contig83:626404..6265211682350467.7328892-CDS-Ecto-sp6_S_contig83:626404..626521Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 626405..626521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17548.1

>prot_Ecto-sp6_S_contig83.17548.1 ID=prot_Ecto-sp6_S_contig83.17548.1|Name=mRNA_Ecto-sp6_S_contig83.17548.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=436bp
MRARLWSVFVLGTIISLHHWNAAAGSDDPAAAVAAERTPQNVHSDRGLGR
IDSLQLRQQHAAMAWKEEDERILFGGRTRYSVIVVEVEHHTSNLAREKER
VRAFEDSTNTAVVSVQFANPCPHAPITEGSAAPFFVSHPEGDEEAAVYKK
VRVVHLKDIGTHVKPYQASHLQASCEDPTETTVLIISDETCRTSGLPVGI
PPSCRSNVVRVFPFNQDRANGEPRRPYLPLGPRDTFPFVSDDRRPLASSR
SLFFNLQQVRPETQGRRGELIETASIYQLSNPGIECATNRPSISTKAWQE
LVLDSKFTLCPAGRNPETFRLWEALEAGSIPIVSKLDFTHPVVGTKSNTT
CGDGDIAWNTVAASPFAKQVSVNNWLELPDLLDRLQREPDEYINKLQEEC
VAWYSMAMTQTYTSLLNFGEGHDLFPQEGPIFDSL*
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mRNA from alignment at Ecto-sp6_S_contig83:620918..626521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17548.1 ID=mRNA_Ecto-sp6_S_contig83.17548.1|Name=mRNA_Ecto-sp6_S_contig83.17548.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5604bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:620918..626521+ (Ectocarpus species6 EcLAC_371)
ATGAGAGCGCGATTGTGGTCCGTTTTTGTTCTTGGGACTATCATCTCCCT CCACCATTGGAACGCTGCTGCGGGTTCGGACGACCCTGCTGCTGCTGTTG CCGCTGAACGGACCCCCCAGAATGTCCATTCCGATCGGGGCTTGGGACGC ATTGATTCGCTCCAGCTGCGGCAGCAGCACGCGGCCATGGCGTGGAAGGA GGAGGACGAACGCATCCTCTTCGGCGGCAGGACTAGGTACTCCGTCATCG TGGTCGAGGTGGAGCATCACACGTCGAACCTGGCTCGAGAGAAGGAGAGA GTGAGAGCGTTCGAGGACAGCACCAACACCGCGGTGGTGTCGGTGCAGTT TGCAAATCCCTGCCCGCACGCACCGATAACGGAGGGCTCGGCCGCTCCTT TCTTCGTGAGTCACCCGGAGGGAGACGAAGAAGCGGCAGTGTACAAGAAA GTGCGGGTGGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTATCA GGTGTGGGCAGTCAAGGAAGGCAATTTGTACAGGCTGCTGACCGAGACAC CACACATACATGTGCCATGTACAATCTGCACGCTTTGTGTCGTCTAGCGA ACGCGCCCCGTTGCCCATCGACTTAAGGTTAACATCTACTATCTTCCCCA AACATAGTGCGTACCATGCGTATGTACAATGCATGCCCAATATTTATGCA TACTTGGGGTTGCATACTTTGTTGGAGATTGCTTTTCGAAATACAAAAGC CTCCCCCCCCCGCCTTCAGGGGGTTAGGGTTGAGGCTTCCATCCTGtTTT TTTTTTTCATGCCTTGGTCCTCCACACCGTTGGAAAGACACTCCACGTGG TCGTTTTCTATGATAACATGCTTTCTGTGGCAGATACCAACAATAGATTC GACAGAGGTAGGAGTAAACCGAGTTCTGGGCGTATTCTGCCTTCCGCACA CGGTGTGTGAGGTTACCCACCAGGAGTCTGTCCGATGCAATATTCTCAAC TATTTTCCACCAACAGCAGGACCCGTCATCGAAGGATTAGCCCGATTAGT AAGTCCGATCAGGCATGCTGCCGAAGGCGACACACCTCAGGCTTGTGGAC AAGTTGAGGCAAAAACTGAGGCATTGCCTGAGACATCAAATTCCATGCCT GTGAGGTGTCTGTAATGCTACAGCAGTAAAAAGACAAGGCGGGTGCACCG AGTCCGCGATCAAGTTTTGGCCGGCCGAGGTTGGGTTCTTGGTTCCTACG GACATGTGCGAATGGCCGCTATGTTGTACTTCAAGCAGGCTGTAGTTTTG GGGTCTTAACCGAGCTCACAAGTGGTGCTCAAGTTTTTAGGTTTTGAAGT TTTCGAGGCTAAATCATTTTTTTTTCATGAACTGCCAAAGTTCAGTGCGG GCGCTACCTGTCTGTGGTTCTACTGGGAAATTTCCAAATGCACATTTGAT GATATTTTGTGTGGTTGGCCCCTTTCGTCAATGGTCTACGCAAAGCCGTA CACACTTTTGTACGAGAGAGGGGCGGCTATATGGGTACACCCGCTCTTGT CTGTTTCCCCATGAACAGCTTGTTCGAACTTGAAAACAACGACGCCGTCG ATGTTCGGTTTGGACAATCTCCTTACCGACGGGTTGGCTCACTCTTAGCC TGTCCATGGGTACGTATTGTTGTACCTGAGTATGGACTGTAACTCGACAC AGTAGCAGAGGGTAGAGAGAAAACATTTTGTGGCACGTTTTCAATTTGAA GGCAATCAATATATCCCTCATGCAACGGAAGGTGCACCAATTTCTTCTCA AGTCTCTCAAAGCGAAAAGATCGATATATTTCAGCCTGAAGTGGACACTG ACACAAATGAACGTACGACGCGATAAGTAATCCGACGAGCTAGCTGGATG AGCCACAACTAAAATTCGAAATCGACATTTGACGGTAGAAAAATATGGGT TGGTTTCTCATCTGAGGAACCCGAATAAGAGAAGATTCGGGGCCCTGGTT GCGTGTCATCCCTACCGTTGTGTACAACGGCAACAGCAGCAGCGACATCT GTCAACGTTTCGCGCTTGTGTCTTTTGCGATTGGGCGTCGTCGTGTGTTG TTCCAGGCGTCTCACCTGCAGGCCTCTTGCGAGGACCCGACTGAGACGAC AGTGCTCATCATCTCCGACGAGACTTGCAGGACGTCCGGTCTCCCGGTGG GGATACCGCCCTCGTGCCGGTCCAACGTCGTTCGGGTGTTTCCCTTCAAC CAGGACAGGTTAGGTTGTCCTGCTGCGTAGCGCATCTCTATGCCAGACGA GTAAGCCTTTTGTGTATCGCGGTGCGTGTACTGTACTGACGCCACAAGAA ACGGGTGCAGAAAGGTAAAAGCCACAAGTCTTCTTGCTTGCTCCCCACTT CTCTGGCCCTCGTGCTCTAGTTGGTTTCACGCAGCGCAACGGAGGAGTAC GTCTCTCTCTCCCTCCCACCCACCCCTTTCCCCCTTTTTTCTCGCCCTAC CCGGCCCTTCCTGTCGCTTTCTCTTAGAGACCAAATGTTCTTGGTGAGTG GCGGAGACGCTGCCGTTTGTTTCTTGTTTTGCATGCGGTGCACTTGCACT GGGATCCCAGAGCAGTGAAGAGTACGTGTGTGCCCTGTTTCGGGGTATGA CTTCCTTGTCACCGATTCAAGTGTCATATTTACCGATAGGGGATGGTGGA TAGGTAGCACACCTATGGTTCATGTGAAGTGTGAATTGAACTGTGTACAG GACAATAGCAACGTTTACGCTATTGTCAAGAGAACGGTTGTGTACCAGAA TTCGAGAGGTAAGGGTATGGACTCGTGGTCTCCGATCGATGGCCGTTACT GTCGCGAGTTTTGCTGAGCCGTCGCTTGAACTATAGTGCCGCAAGCGCCG ACCATTTTCACACATGAAGGATGAGATGAACTCATTGAACTCATGAGTCC ATCGTCGTCAACCCCAAGGCAAGCTGATGGTTGAAGGCACCCACCCACCC ACCCACCAACTGCCAATCGACCAATCTACGCAAAGCGTATGAGCCAATGG CGCCGCTTGTTACCCTCTTAACTAACGAGTCCAAAATGTTCCAACGTGTC AACCGAGTTCCCTCTTGGAACGAGTGCAATGTATGCCATCCACTTCAACT AAGCCGCAGGTTGCAGCAGACATGTTTTGTACGCAAAATGGTCAACAAAT AGCACTCCCTGTTGTTTCTTTTCCCCCTCAACCACGGTTGTTTTTGCCGC GAAGAGCGAACGGAGAGCCGAGGAGGCCGTACTTGCCACTGGGGCCGCGG GACACGTTCCCCTTCGTCAGCGACGACCGTCGACCTCTCGCTTCAAGCAG ATCGTTGTTTTTCAACCTACAGGTGTGGTGTGGGTGTAAAATACAGTAAC TGATGTGTGTCGCGGCTTGCTTTCGCTTCGGAGAGAGCGAGCGCAAGCAT TGTTCAACGTGCAGGGATCGTGTGCCGCATTGTTCAGCGTCGGGCGGTGT TGTTGCATTGCACTTTCAACACTTCCGGTGTAGTTTTGACGCGTTTTTTC TGCTTCGGAGAGAGACCACCAGGAGCAAGCTTGCAGAGAACATACAAATC CCGGTCCCTGCACAGCAGTAAGGCCCTGAAGAGTGCGGGGGACTGGCATC GTGCGGTCAGGTTCTCTGGGTGATATTGCGGGCCCCCCTAGCAGTAGTAG TGCGGTTTGGCCGTGTTGTCAGCGATTCCTTCGACAAATGAAACCATCGC GGGCCCACCTACCATCGCCCGTAACAGACGAAGCAGCTCCGCGCGCGCCC GAATACCGCTTGGCCAAGCAGGTCAGACCTGAAACGCAGGGCAGGAGGGG GGAGCTCATAGAGACCGCCAGCATCTACCAGTTGAGCAACCCAGGCATCG AGTGCGCCACCAACAGGCCGAGCATCAGCACGAAAGCGTGGCAGGAGCTG GTGCTCGACTCGAAGTTCACCCTTTGTCCCGCGGGGCGCAACCCCGAGAC GTTTCGCCTGTGGGAGGCCCTGGAGGCCGGGTAAGCATGCCGTGCCGCTT GATGTGAACTGGTCTCCGTTCTTGTCCGTCACGTGTTTCGTCGCTCGCAG GTGCTGCCTCCGTATTCAGATCGCAGCACCACTTATGCAGTGATGAACGT GAGCCTGCAAAGTCCAAATCTAAGAACTTGGCCTCAAGAACATGTGTGCT CAGTCAAGAATCCTATAATAAAACCTATATATTCGCCGTGGGGGTAGTCT ACAGTACCCCACGGATGAAAATAAGAAACGAGTCTCGGCAATAATGAGAG GTTCTGGAGAGTGAGCGCGTCCTGTACACCTGCCGTTCCCTCCTCGCCTG ATGAGAGGTCCAATCACGCTCCGCGCGGGTTTCGGTTTTGAAGCAGATGG TGCTGCAGCTTTTACGTGCGTTTAGAGTGGAAGTAGCTCTGCGCAAACTG CTGTCCCAGAGGACGCTCTCGCTGCCACACACAAATCGCTTAGTAAGTAC CGATCGGGTCTGCATGCGCCCTCTCTATCGTGTTCGCTGGTCAGGTCGAT ACCCATCGTTTCGAAGCTTGACTTTACGCATCCGGTGGTGGGCACCAAGT CCAACACCACCTGCGGGGATGGGGACATCGCCTGGAACACCGTGGCCGCT TCTCCCTTCGCGAAGCAGGTCTCGGTGAACAACTGGCTCGAGCTGCCCGA CCTTCTAGACCGACTGCAGCGGGAGCCCGACGAGTACATCAACAAGCTCC AGGTACTAACCGCCCCCCAGATCAACAGCAAGTACGTTCATGACGCAAAA ACGATGTACCTGAGGTGCAGAATCACACACAGACACAGGCTGGGCCTTTG TGTCCAGCCTCTCAGCCTCTTCCATCGCAGGCATACAGAGGTTGGAACGC ATGGAAGTCATGGAGAATACGGAGGAGATGGTGTGCAAGAAAGCAAAAGT TCTAACCCAGATAGTCTTCCACACAGACCAAACGCCGGAGGGACAGTGAA CTGCCCGTAATATAGCAATGGTATTAGCTATGGGGGTAGCGAACACCCAG AGAAAAGAACAAACAACGATACGCCGAGGGAGCCAGCAAATACCACAACA AGTAGAAACCTTTGTACAGCAGTAGACACGTGCGTTGCCCTTCATCTTGG ACCCACGTCTGTTCTTTCATCCGGACCGCTATCTAGCCTCCCACCTGACC CCTCCCAGATCATGGCCTTTCCCGTTGTCAGCTTCACCGAGGCAGACGTT GTTTGATTGGTCGACCTGTTGGGGCGGTGGATGCTAGATACTGAAACATC AACGTACACACGTTGGGCGAACCGGACGTTCCTTTCAGCACTTCCTTCCC CAACAAGACGTCGCCAAAGCGTCGTCCAAATCAACCCTGTATTATACTTC TATATCTGTATTTTGGACGTTGTGATAGGTGTATGGCGGAGTAAATGTGC TGGTTGCGTTTCCGGTCAAACCTCTCCCCTCTCGCAGGAGGAGTGTGTGG CGTGGTACTCTATGGCGATGACGCAGACGTACACAAGCCTGCTCAACTTC GGGGAAGGGCACGACCTGTTCCCCCAGGAAGGACCAATCTTCGACAGCCT TTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:620918..626521+

>mRNA_Ecto-sp6_S_contig83.17548.1 ID=mRNA_Ecto-sp6_S_contig83.17548.1|Name=mRNA_Ecto-sp6_S_contig83.17548.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:620918..626521+ (Ectocarpus species6 EcLAC_371)
ATGAGAGCGCGATTGTGGTCCGTTTTTGTTCTTGGGACTATCATCTCCCT
CCACCATTGGAACGCTGCTGCGGGTTCGGACGACCCTGCTGCTGCTGTTG
CCGCTGAACGGACCCCCCAGAATGTCCATTCCGATCGGGGCTTGGGACGC
ATTGATTCGCTCCAGCTGCGGCAGCAGCACGCGGCCATGGCGTGGAAGGA
GGAGGACGAACGCATCCTCTTCGGCGGCAGGACTAGGTACTCCGTCATCG
TGGTCGAGGTGGAGCATCACACGTCGAACCTGGCTCGAGAGAAGGAGAGA
GTGAGAGCGTTCGAGGACAGCACCAACACCGCGGTGGTGTCGGTGCAGTT
TGCAAATCCCTGCCCGCACGCACCGATAACGGAGGGCTCGGCCGCTCCTT
TCTTCGTGAGTCACCCGGAGGGAGACGAAGAAGCGGCAGTGTACAAGAAA
GTGCGGGTGGTGCATCTGAAGGACATCGGGACGCACGTCAAACCCTATCA
GGCGTCTCACCTGCAGGCCTCTTGCGAGGACCCGACTGAGACGACAGTGC
TCATCATCTCCGACGAGACTTGCAGGACGTCCGGTCTCCCGGTGGGGATA
CCGCCCTCGTGCCGGTCCAACGTCGTTCGGGTGTTTCCCTTCAACCAGGA
CAGAGCGAACGGAGAGCCGAGGAGGCCGTACTTGCCACTGGGGCCGCGGG
ACACGTTCCCCTTCGTCAGCGACGACCGTCGACCTCTCGCTTCAAGCAGA
TCGTTGTTTTTCAACCTACAGCAGGTCAGACCTGAAACGCAGGGCAGGAG
GGGGGAGCTCATAGAGACCGCCAGCATCTACCAGTTGAGCAACCCAGGCA
TCGAGTGCGCCACCAACAGGCCGAGCATCAGCACGAAAGCGTGGCAGGAG
CTGGTGCTCGACTCGAAGTTCACCCTTTGTCCCGCGGGGCGCAACCCCGA
GACGTTTCGCCTGTGGGAGGCCCTGGAGGCCGGGTCGATACCCATCGTTT
CGAAGCTTGACTTTACGCATCCGGTGGTGGGCACCAAGTCCAACACCACC
TGCGGGGATGGGGACATCGCCTGGAACACCGTGGCCGCTTCTCCCTTCGC
GAAGCAGGTCTCGGTGAACAACTGGCTCGAGCTGCCCGACCTTCTAGACC
GACTGCAGCGGGAGCCCGACGAGTACATCAACAAGCTCCAGGAGGAGTGT
GTGGCGTGGTACTCTATGGCGATGACGCAGACGTACACAAGCCTGCTCAA
CTTCGGGGAAGGGCACGACCTGTTCCCCCAGGAAGGACCAATCTTCGACA
GCCTTTAA
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