mRNA_Ecto-sp6_S_contig83.17538.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17538.1
Unique NamemRNA_Ecto-sp6_S_contig83.17538.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 546 bits (1408), Expect = 1.250e-189
Identity = 352/356 (98.88%), Postives = 353/356 (99.16%), Query Frame = 2 
Query:  128 MSTTYRQLVLRLPDGLKEAMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLEVTGTTEKPEAGAXXXXXXXXXXEGSTAPRLFGSELLYEHPEILLAVVMFPSVGVPAAMPSLGEGVGLDPDDASAVMEDMNDAEDVLGVEDIFLGM 1195
            MSTTYRQLVLRLPDGLKEAMRERVAAD GMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLE+TGTTEKPEAGA XXXXXXXXXEGSTAPRLFGSELLYEHPEILLAVVMFPSVGVPAAMPSLGEGVGLDPDDASAVMEDMNDAEDVLGVEDIFLGM
Sbjct:    1 MSTTYRQLVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTAPRLFGSELLYEHPEILLAVVMFPSVGVPAAMPSLGEGVGLDPDDASAVMEDMNDAEDVLGVEDIFLGM 355
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 188 bits (477), Expect = 6.520e-51
Identity = 123/328 (37.50%), Postives = 164/328 (50.00%), Query Frame = 2 
Query:  140 YRQLVLRLPDGLKEAMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLEVTGTTEKPEAGAXXXXXXXXXXEGSTAPRLFGSELLYEHPEILLA-----VVMFPSVGVPAAMPSLGEGVG 1108
            YRQL+LR+PD LK  +RERV A    + +DF  + +   ++ FT+DG++YPARLV++PC LET KT D   ++KS D+GQMLIVY+DE+A+  D  +AS +GP + Y DG+TPPT+NIVRR+FVKARP  GKF +A+V+ VESQ+  +                                                                           + VT  HEEIV FEPWM DP  A  GR+ G+TL++TG++   E  A          EG     LFG E+L  HPE LLA     +   P    PAA   +   VG
Sbjct:    9 YRQLILRVPDKLKGRVRERVQAGQS-DNMDFVQDGENPLKYVFTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYEDEDAFNADAEDAS-IGPAQYYADGITPPTRNIVRRKFVKARPVLGKFPKAQVMTVESQLEML---------------------------------------------------------------------INATAAEPVTEVHEEIVDFEPWMLDPSAAITGRVAGVTLQITGSSNVTEMRAAG--------EGGA---LFGHEVLAYHPEALLARGELPIEEPPKQAAPAAPAVVAVSVG 254
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.450e-21
Identity = 65/175 (37.14%), Postives = 98/175 (56.00%), Query Frame = 2 
Query:  107 ARHTHHTMSTTYRQLVLR-LPDGLKEAMRERVAADAGMEGVDF---------TPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPE 601
            A  +H   +   RQ++LR LP+ L EA+RE++  +  +  V F         T +   S++  F +    YP  LV++PC +E+ KT D+ T FKS D+GQMLIV+++E   +K +    GV  QR +  GLTPPT  + RRRF + + +   F R EV  VE ++LK+    PE
Sbjct:    2 AAMSHDEATHVQRQVILRILPESLLEAIREKLV-EGSLSDVQFFFEDPPALSTLQVSPSQKMVFQLGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFENEGEREKAE-KECGV-EQRFFHSGLTPPTSYVTRRRFAQTKSELRSFTRKEVSEVEDELLKLMSSTPE 173
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A397DDH0_9STRA (TAFII55_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DDH0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-17
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2 
Query:  146 QLVLRLPDGLKEAMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 583
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 94.0 bits (232), Expect = 4.120e-17
Identity = 57/150 (38.00%), Postives = 79/150 (52.67%), Query Frame = 2 
Query:  146 QLVLRLPDGLKEAMRERVAADAGMEGVD-------FTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 574
            Q +LRLP  L E MR  ++++   EG         F  + K  R   FT+DGK YPA L+D+PC++ET KT DKRTF+KSGD+ Q+L+V   +    K              PDG+TP TK   +R     +P    F R EV  +E ++
Sbjct:    5 QFILRLPQPLVEPMRFALSSNKKREGAGDDRQASKFEIDFKDERNAIFTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDEPVPK----------HTQLPDGITPATKGAAKR----MKPPERFFTRDEVELIERRI 140
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A8J2T034_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T034_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.540e-17
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 2 
Query:  185 MRERVAADAGMEGVDFTPEKKGSRR--------FTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNAS---GVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL 577
            + ++VA D   EGV+FTPE   S +        F   +D    PARLV++P ++ET KT D+ T+ K GDVGQ+L+V+KDE++  +D    +   G     ++PDGLTPP ++++RRRF KAR    K    E +R    +L
Sbjct:   67 LEQKVAKDK-TEGVEFTPEGDTSVKQDDFHSLDFRCKIDDLDLPARLVNLPTIVETHKTWDRETYVKCGDVGQILLVFKDESSRTQDKARQAAHAGSAWSLVHPDGLTPPLQDVIRRRFSKARKRSRKDVTVEEVRRAEDLL 207
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A1V9ZGC5_9STRA (TAFII55_N domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGC5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.010e-16
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 2 
Query:  146 QLVLRLPDGLKEAMRERVAADAGMEGVDFTP------------EKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKAR--PDRGKFDRAEVIRVESQVLKM 583
            Q +LR+P  +   +R+++  +  + GVD               +   ++ F F +DG++YP  L  +PC++ET KT D   F+KSG++GQ+ +V+  EN  KK      G       P GLTPPT NIV+R++ K +  PD   F +A+V RVE  ++K+
Sbjct:    3 QYLLRVPRKIGNELRKKIQ-EKDINGVDLVAGGMSIRVYESNDDVADNKYFKFHIDGQEYPVTLNQLPCIMETHKTYDDNLFYKSGEIGQIFMVH--ENFEKK-----KGYEDVTELPSGLTPPTTNIVKRKYAKTKKYPD---FPKADVARVEDGLIKI 151
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A7S3JUW2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.930e-16
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 
Query:  128 MSTTYR-QLVLRL--PDGLKEAMRERVAADAGMEGVDFTPEKKG-----SRRFTFTMDGKKYPARLVDMPCVLETQKTLDK-RTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKF--DRAEVIRVESQVLKM 583
            MSTT + QL+L    PD L +      AA+ G E      E++      SRR    + G  YP RLV++P ++ET KT D  +  +K GDVGQ++IVY++E A + D+G       Q +Y DG++PP KN V RRF KAR  R K   +  E+  VE+++  +
Sbjct:    1 MSTTVQTQLLLHAESPDVLAKLSELVDAAEGGGELEIVAEEREANENESSRRMKLVIMGHTYPTRLVNLPTLVETHKTFDNGKNVYKCGDVGQVVIVYQNEAARRADEGRTIHKAWQHVYQDGISPPLKNCVERRFAKARRRRAKVQANARELHAVEARIASL 163
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BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: W4GBL9_9STRA (TAFII55_N domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBL9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.160e-16
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2 
Query:  146 QLVLRLPDGLKEAMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 583
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Match: A0A397VEC4_9GLOM (TAFII55 protein conserved region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VEC4_9GLOM)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-15
Identity = 60/160 (37.50%), Postives = 84/160 (52.50%), Query Frame = 2 
Query:  146 QLVLRL--PDGLKEAMRERVAADAGMEGVDFTPEK-----KGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYK----DENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQD 592
            Q +LRL  P+ +K+  RE+V          F PE      K SRR  FT + +KY ARLVD+PC++E QKT + + F+K  D+ QMLIV       E  +   +  AS    Q  +PDGLTPP KN+  RRF      R +    ++  +E +V K+  D
Sbjct:   91 QFILRLMVPEDVKQRFREKVRRQK------FAPEDVEIMFKDSRRAIFTFENQKYSARLVDLPCIIEAQKTFNNKQFYKVADICQMLIVESPIDTQEEVHMFTENMASSSIDQFEWPDGLTPPLKNVRNRRF------RKRISNKKIEDIEKEVEKLLHD 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI1.250e-18998.88TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA6.520e-5137.50TAFII55 protein conserved region-domain-containing... [more]
A0A7S2RHU4_9STRA1.450e-2137.14Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A397DDH0_9STRA1.020e-1736.18TAFII55_N domain-containing protein n=2 Tax=Aphano... [more]
A0A2V3IJD7_9FLOR4.120e-1738.00Transcription initiation factor TFIID subunit 7 n=... [more]
A0A8J2T034_9STRA6.540e-1739.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9ZGC5_9STRA2.010e-1634.38TAFII55_N domain-containing protein (Fragment) n=1... [more]
A0A7S3JUW2_9STRA2.930e-1638.65Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4GBL9_9STRA5.160e-1636.18TAFII55_N domain-containing protein n=5 Tax=Aphano... [more]
A0A397VEC4_9GLOM1.120e-1537.50TAFII55 protein conserved region-domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:502024..508267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score550.8
Seed ortholog evalue4.6e-154
Seed eggNOG ortholog2880.D7G280
Preferred nameTAF7
Model size1855
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Exons7
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5414@1,KOG4011@2759
Ec32 ortholog descriptionTAFII55 protein, conserved region
Ec32 orthologEc-16_002140.1
Cds size1071
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17538.1prot_Ecto-sp6_S_contig83.17538.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 502151..507610 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350466.488605-UTR-Ecto-sp6_S_contig83:502023..5021501682350466.488605-UTR-Ecto-sp6_S_contig83:502023..502150Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 502024..502150 +
1682350466.5988953-UTR-Ecto-sp6_S_contig83:507610..5082671682350466.5988953-UTR-Ecto-sp6_S_contig83:507610..508267Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 507611..508267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350466.504121-CDS-Ecto-sp6_S_contig83:502150..5022811682350466.504121-CDS-Ecto-sp6_S_contig83:502150..502281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 502151..502281 +
1682350466.5187187-CDS-Ecto-sp6_S_contig83:502729..5028681682350466.5187187-CDS-Ecto-sp6_S_contig83:502729..502868Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 502730..502868 +
1682350466.541023-CDS-Ecto-sp6_S_contig83:503279..5034321682350466.541023-CDS-Ecto-sp6_S_contig83:503279..503432Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 503280..503432 +
1682350466.5576537-CDS-Ecto-sp6_S_contig83:504033..5043931682350466.5576537-CDS-Ecto-sp6_S_contig83:504033..504393Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 504034..504393 +
1682350466.5679896-CDS-Ecto-sp6_S_contig83:505157..5052951682350466.5679896-CDS-Ecto-sp6_S_contig83:505157..505295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 505158..505295 +
1682350466.5779946-CDS-Ecto-sp6_S_contig83:506570..5066871682350466.5779946-CDS-Ecto-sp6_S_contig83:506570..506687Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 506571..506687 +
1682350466.588211-CDS-Ecto-sp6_S_contig83:507577..5076101682350466.588211-CDS-Ecto-sp6_S_contig83:507577..507610Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 507578..507610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17538.1

>prot_Ecto-sp6_S_contig83.17538.1 ID=prot_Ecto-sp6_S_contig83.17538.1|Name=mRNA_Ecto-sp6_S_contig83.17538.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=357bp
MSTTYRQLVLRLPDGLKEAMRERVAADAGMEGVDFTPEKKGSRRFTFTMD
GKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDG
NASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL
KMQQDVPEGPDRSRKAGSSGGGGITAGGGMSGSSSRGGSADASGGGSSSS
RSRTSRSSGGGGGSSGGGGGGGGEVGGDGVTFEHEEIVPFEPWMADPKFA
ALGRLEGITLEVTGTTEKPEAGAAGAAGGAGGGEGSTAPRLFGSELLYEH
PEILLAVVMFPSVGVPAAMPSLGEGVGLDPDDASAVMEDMNDAEDVLGVE
DIFLGM*
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mRNA from alignment at Ecto-sp6_S_contig83:502024..508267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17538.1 ID=mRNA_Ecto-sp6_S_contig83.17538.1|Name=mRNA_Ecto-sp6_S_contig83.17538.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6244bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:502024..508267+ (Ectocarpus species6 EcLAC_371)
CGGCGTCTACGTAAGACGGACCTCTGCTGTTGCTTGGGCGTCTACTTAAG
GCGGACTGGTGCTGTTGTTTGGGCGTCTACGTTAGACGGACAAGTGCTGC
CGTTCTGCGCGTCATACCCACCACACAATGTCCACGACGTACCGCCAGCT
GGTGCTGCGCCTACCGGACGGCCTGAAGGAGGCGATGAGAGAAAGGGTGG
CCGCGGACGCGGGGATGGAAGGGGTCGACTTCACGCCAGAGAAGAAAGGG
AGCAGAAGGTGGGGCGAGGGGGTGGGGCTGTTAGGCCCGCAGGTTGTTTC
CAACGGACGACCCCACGGCAGGGTATGGGAGGGTAGGGTAGGACAGGGCA
GGGAGGGGTATACTCATAGCCGTGCATGCCGTCGTCGTTAGACCATTGGC
CTCGCAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTGAC
AGGTAGGGCGTGGAAGAAAGCGGGTGCTCACCTTTTGCTTCTCTCGCGTT
TATCGTGCTGTTGGTGGAGCTCCAGTCGACGCCATTTCAGCCAAACAACA
ACTGCTGTGACAACTTCAATGCATCCTATTTGATGATGCGGGAGGTTTTG
TTAGCGCGGGCGGTCTGTTTGCCCACTCTGTACAACAACAAGAGTATTTT
GGATTTTCGAAACCGAAGGGTAACCCAGTCGAGCGTCGTGGTGACCGTTT
CGACAGGTTCACGTTCACGATGGATGGGAAGAAGTACCCGGCCCGCTTGG
TGGACATGCCGTGCGTGCTGGAAACCCAGAAGACCCTGGACAAGAGGACC
TTCTTCAAGAGCGGGGACGTCGGCCAGATGCTCATCGTCTACAAGGTGTT
GTCTCCCGTTTCTGGTTGGAGATCTCTCTGGTGCCCTCGCTGTTCACTGC
TGTTGGTACGACCGTAAAACCTTAGTAGCCAAAAGAGGACATTATACAAT
GGGGTTGTTTTTGTACGTGCTCAGAATGGCTGGGGGCAATGTTTCCCGAC
CCCCCTCCGTTCATGGTGCTACTCGCCGGACACCTCACGGCCCTCAACGC
TTGGCGCAATCCGTCCTTGCCTGATCGCGAAACCACGCCTCGCGATACAC
GTCCCTTAGAGTTTCCCACGAAAGCCCACAAGCGCCACCAACAATGGGTT
GCCCCCCCCTCCTTCCTCCACATTCGAGTACCCCCGCCTCACCCCTCAGC
CGCAGTTTTTATAATCCCCCCCGTCCTCTCTCGTTTATTTTCCTTCCCCC
CCCCAGGACGAGAACGCCTACAAGAAGGACGACGGGAACGCTTCCGGGGT
CGGCCCGCAGCGCCTGTACCCGGATGGCCTGACCCCTCCCACCAAGAACA
TCGTAAGGAGGCGTTTCGTCAAAGCCCGGCCGGACAGGGGGAAGTTCGAC
CGAGCGGAGGTGCGAGCTGGGTTAGTGTTGGTGAAGATGACCACAACAAC
GATGATGATGATGGTGGTGGTGATTGCGATTTGTTTGTACAGTCGACCCT
GCTCTACGGACACCCATGCTTTTTTTCTTTTTCAAAATGTCCTTAGCGGA
AGCGTCTTTAAGGCCGGTACCCCCCCCCTCTATACGTACATCTGGGGGGC
ACCCTGCTTCTGAGTTTTTTTTTGTCCTTGAAGCTGGGAGTTGACTTAAG
ACGAGCATCCTTAAAGCGCGGACGACTGTAGCAACGAATGAAGCGCGCAC
CGTGAGACGCGAGAATATCCCAAGGGAAAGAAGACAGTGTCTTGCACTTG
GTTCCCACACCACAGGGGGGGGTGTGCATTGGCCGCGTGAAATAGTTCCT
GTCCTGACATGAAGAGGTGGTGATTGGCTGCGTAGTTTGGTGCGCGAGGA
GATTGTGGGCCCGTTACACACGACAGTCAACCTAGGACGTTCCACACGAG
AAGGAGCAGCACGGGGGAGGGTCGGCAGGCGTTATTCCGTGATCGACACA
CGCACCGGCAGCTCTGAGAGACCCCCCACCGCGACCCTCCCCTGCTTTCC
GACAAAACAGGTAATTCGGGTCGAAAGCCAGGTACTAAAGATGCAGCAGG
ACGTCCCCGAAGGCCCCGACAGGAGCAGGAAGGCAGGCTCTAGCGGAGGC
GGCGGAATCACGGCGGGAGGGGGAATGTCGGGGAGCTCTTCGCGAGGAGG
CTCCGCGGACGCGAGCGGGGGGGGTAGCAGCTCTTCGCGGAGTCGCACCT
CGAGAAGTAGCGGGGGTGGTGGCGGCAGCAGCGGCGGCGGCGGGGGAGGG
GGTGGCGAGGTCGGCGGCGATGGTGTTACCTTCGAGCACGAAGAGATCGT
CCCTTTCGAACCGTGGATGGCCGACCCGAAGTTCGCCGCCCTAGGGCGCC
TGGAAGGCATCACGCTCGAGGTGCCTCATTTTCACGTGACGAAAAGGTTT
TGCCGCCACTCCGCTCGCCGGCCCCGTTTTGTGCTGTCTGCTGCTCGTTG
CTGTGAAATGACCAACTCTCGTTGCTAGCCGAGGTGTTTTTTATGGAGCT
TGGTAAGGCGGTTTGAGGTGTCTGCAGCGTCGTCCGCGCTTTGCCCTGTC
CGGTGGTTTGTTCGGCCCCAGCTACGTCTCATGGTGGCACGGGCTTGTTT
GTATCATCTCTCTCGCCCTCCCAGGCGACAATTTTTCTCCGACCGATGTT
GTGCCGCCTTACTCCCACCTTTGTCCCCGCTTTCTCTTCGACGGTTTCGT
GTTCTTGTTTCCGCCGCCGCCTCTTACTCCCCACCTACATTCCTACCGAC
CGATTTTTCTACGTGATTTTGAGGGGAGACACACGTACAGAACACCAAAA
CTTTTAAGCCGGTGTGACCCTGTTGAATTGTTTTTTTGGTATTGGGGGAT
TCTCCCTCCGGATGTTTTTATGTCAAAAAAGGGACGATCAATCAATACTC
CAAGAACTCTGGGGCGATCAAATGAAGTAAACGCCTCAGTCGAGGTCGGC
CAAATCAACCCCCCCCCCGGATGCAGCAACGTCAACCGAACACTGCCCCC
CGTCCCCATCCCGCCAATTGTATCAACCCTCTCCCACTTCGTCCTCTCGA
GGACGCGTGGTCAATGGTCTCACCGCTTAGGCATGCTAAACATGAGTACC
CCCCCACCACCGCCACCGCCACCCGGGTTGTTAGGTCACCGGAACGACGG
AGAAGCCCGAGGCAGGCGCGGCCGGGGCGGCCGGCGGCGCCGGCGGCGGG
GAGGGGTCGACGGCACCGCGGCTCTTCGGCTCCGAGCTTCTCTACGAACA
CCCGGAGATTCTCCTCGCTGTGGTACGTGTGCGCGTACGAGAGGGGGGGG
GCAGCGGTGCATGCCATGCCCGAGTGGAACGAGGAGTTTTTTGTGACCGG
GGTGGGGCTGTGAAACGGTTTCGCCAGAAAAGATAGTGGAGACTGGATTT
TTTCTGCACGGGATACATACGTAGAGGAAATATAGAGGCGCTAGCGAGGA
GGAAGGCTGTGGTTCGAGGGCTGATGCGGAGCGGTACGAGAGACGTGGTA
GCCGTTCCCCACTTGTTTCGGCCGCAAGAAGGTTTTGTACCTTTCCTTAT
TGGTCGGGCGTTTCCGACGCCGCTTGCTTCTTGTTGTCTGGAGGGGGTGT
GACAGAAGCAGTATCCATGACCACAGCAAGAACACAATACATGCCTGCAT
GCCACTTTAGGTGGCACGACTCGTGCCCCCCCGGCGCTAACCTGCATGCC
CCCTCCCCCCCCCCTCCTCTTCCACCCAACAAACCGACTCGCGCGTGGCG
CGCCTATTTGTACACTCAAAAATTGCGATGACGACGACGTTACGATAATG
ATGGAAGATCGATACCCCCGAGGACCCGACCTTACAGCTCCCCCGTCCCG
CGAAGCCGGCGACGCCGACGACGACGCCGGGGTCTTCGCCGGGGGGGTCG
GGGAAGAAGTCGTCGTCCGCGGCGGGGGGGGGGGCGAAAAAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGAAGCAGAAGCAGAAGCAGCAGGCTGCCCGGG
GGGGGGGGGGCAGCGTTGGAGGCGGGGGCGGGGGCGGCAGAGGGCAGCAG
CGGCAGCAGGTGCGGTTCGGTCCGGTGCGTTGCGTTGCAACACTCGCTGT
TCCATGATTCGACGGGGCACCGGAACACGCTTCAACGTCTGTTACTACAA
TATTCTGTTGGGAAACAACAGTGAATTTTTTAGCCATCCACGTTGTTGTC
GCCGCGTTCAAACACCCTGCGCAACCGGGCCGCCCCCCCCTCCGCTTCTT
ATATCCGTCGATTACGTTTGACCACAAGCCCGAGCGTTAAGAGGGAGCGC
CCTCCCCACTGTGGACCACGCCGCCCCCGTCCCCGCAATGGTTGGTGCGA
AGTCAAGTGTCTGAGGCAATTGGGAGGGGAGTAACCCCCCTCCCCCTGTG
GCATATCGCTCTGTCTCGGCATTCTAGGGGTGCGAGGTCAAAGGTCTAAC
GGCTATGGCATGCGTATGACTACACCCCCCCCCCTGCAATTTGCAACATG
GTTTTGCGTTGACCGTTGCTCACCCCGGGGTCGCTGCTGATGATCAGGTG
ATGTTTCCCAGCGTCGGGGTGCCGGCTGCGATGCCTTCCCTGGGAGAGGG
CGTCGGGCTAGACCCTGACGACGCTTCGGCGGTGATGGAAGACATGAACG
ACGCCGAGGATGTGGTGGGTTACGGGTACTCCTACATGCGTGTGATAAGA
CGTCTTTTTGTTTTTTCTCTGCGTCTTTGTATTAGCATCAACCGCGCTAT
CCGACTAACCAATGAAAAGACGCCAGTCTGGGGGGGTGTGTGTTCTTCTC
CTCACAAGTATGACAAACCAAGATCATCTCTATCCATTGATGGATACATT
GTTTTGTTTTTTCAGAACGTCGTCGACTGCAGCAGGCCGTGTGTGCCCCC
CCCCCCGCTTGTAACTGTAGCGAGAGCCGGGTGTAGGGGGGGAGAGCGTT
TTTGTCGACCCTCCACGCTTGTCAGGAGACAGACCCGGATGCAGTGTTTG
TTTTTTTCTCGACCGGCGCATGCACCGCATGTACGTACGAGATTGTAGAC
GTGGTTGGTTGTCGTTGTCCTCGCCGCTGTTTTTGCCCAGTTGTCAAGTA
TGGCCGTCAACCGTCTTGACCGTCTACAATGCCGTCGTCTAATTTCGAAA
TGACCTGGCACGGATGGTCAAGATGAAGACAAGGCAGGACTCTATTTGAT
GGCACGAATTGGTTGAACAATCTCTGGCCGCATGGATGAGCACTACAAGG
CAGAGCCAGCCAACCCACTTGCTTGTTGAGCGCTTGTTTGATCTGGTTCA
TGCTTCAAGCCCACGCCCCGTTTGGGGCGGAAATGCGGCCGCAACAGCCG
GCCGTTCTAAATACTTGCGTGTTTGTTGAGCACCCCGGCGGTGCACGCAC
CGTCTCCCCCCCTCCGTCCGCCTGCAATTCACTCGATCTTACGCTTCGTG
CCGTCTGCCTGTCTTCTCGACGGTGCCCTTCTGCTGCTGCTGctaCTACC
CTGCTTGGTGCGTATGTATCTGGTCGTTGCTGGGGGAAACAAAAACGGCG
TCAGCTGGGAGTCGAAGACATTTTCTTGGGCATGTAGGGGGAGCGAGCGA
GCGAACGAGCGGGGGAGTCTGGCGCATATCGATTCTGCTGCCGCCGCTGT
GTGGTGGTGTGGACCGATTGAGCCGAGCTGATGACGGACGTTCCGCGGTC
TACCTTCGACAACGGCTTGAAGCGAGTTCGTTGCTGACTTTGTTGACGCC
GTACAACTTGAAGAGAAACAAATCGTGTCAGAAGGGTCTTTTTGTGCATC
GGCGCTCGCGCGTGCACGATCGGGTCTCAACGTGTGTGTTTGTGTGTTTT
TGTTGTTGGCATCGACCGCACCAACCAGCTGACCAATGAAAATACGTCAG
TCTCAGTGCGGTTGAAAACACGAAAACACTTAAAAATGTCATTAACTGGG
ACCCCGTGAGTTGAACGTGCGTGCTTGTGTGTGTGCGTGTGTTTTTTTTT
AAATTGGCATCGACGGCGCCAACCGATTGACCAATGAAAATGCACCAGTC
TTGTAGCGGGATAAATCACGCGAACACGCTTTCAACAAAGGCTTCAACCG
ACAGAAGGGGGGGCGCAGGAATTTCACGTACGTGTGTGTTCTTGTTATTT
GCATCGACCGCGTTAACCGCGGCAGACGAACGAAAGGACGCCAGTCCTGT
GCGTGTGTGAGGGCTCAGCATGCGTTCAAAAAAACTCGATCCAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:502024..508267+

>mRNA_Ecto-sp6_S_contig83.17538.1 ID=mRNA_Ecto-sp6_S_contig83.17538.1|Name=mRNA_Ecto-sp6_S_contig83.17538.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:502024..508267+ (Ectocarpus species6 EcLAC_371)
ATGTCCACGACGTACCGCCAGCTGGTGCTGCGCCTACCGGACGGCCTGAA
GGAGGCGATGAGAGAAAGGGTGGCCGCGGACGCGGGGATGGAAGGGGTCG
ACTTCACGCCAGAGAAGAAAGGGAGCAGAAGGTTCACGTTCACGATGGAT
GGGAAGAAGTACCCGGCCCGCTTGGTGGACATGCCGTGCGTGCTGGAAAC
CCAGAAGACCCTGGACAAGAGGACCTTCTTCAAGAGCGGGGACGTCGGCC
AGATGCTCATCGTCTACAAGGACGAGAACGCCTACAAGAAGGACGACGGG
AACGCTTCCGGGGTCGGCCCGCAGCGCCTGTACCCGGATGGCCTGACCCC
TCCCACCAAGAACATCGTAAGGAGGCGTTTCGTCAAAGCCCGGCCGGACA
GGGGGAAGTTCGACCGAGCGGAGGTAATTCGGGTCGAAAGCCAGGTACTA
AAGATGCAGCAGGACGTCCCCGAAGGCCCCGACAGGAGCAGGAAGGCAGG
CTCTAGCGGAGGCGGCGGAATCACGGCGGGAGGGGGAATGTCGGGGAGCT
CTTCGCGAGGAGGCTCCGCGGACGCGAGCGGGGGGGGTAGCAGCTCTTCG
CGGAGTCGCACCTCGAGAAGTAGCGGGGGTGGTGGCGGCAGCAGCGGCGG
CGGCGGGGGAGGGGGTGGCGAGGTCGGCGGCGATGGTGTTACCTTCGAGC
ACGAAGAGATCGTCCCTTTCGAACCGTGGATGGCCGACCCGAAGTTCGCC
GCCCTAGGGCGCCTGGAAGGCATCACGCTCGAGGTCACCGGAACGACGGA
GAAGCCCGAGGCAGGCGCGGCCGGGGCGGCCGGCGGCGCCGGCGGCGGGG
AGGGGTCGACGGCACCGCGGCTCTTCGGCTCCGAGCTTCTCTACGAACAC
CCGGAGATTCTCCTCGCTGTGGTGATGTTTCCCAGCGTCGGGGTGCCGGC
TGCGATGCCTTCCCTGGGAGAGGGCGTCGGGCTAGACCCTGACGACGCTT
CGGCGGTGATGGAAGACATGAACGACGCCGAGGATGTGCTGGGAGTCGAA
GACATTTTCTTGGGCATGTAG
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