prot_Ecto-sp6_S_contig83.17490.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig83.17490.1
Unique Nameprot_Ecto-sp6_S_contig83.17490.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length907
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17490.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 1495 bits (3871), Expect = 0.000e+0
Identity = 792/930 (85.16%), Postives = 817/930 (87.85%), Query Frame = 0
Query:    1 MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQANLGEAFFKIWELLQSQATATETPLPPPLAATTMTTSTNAPATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQPVQPVPQNKKRQRAVEPIAGALQELAGTPEEVQKFLRLSTEASPQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSKTMPPRVRELSRTFLDLTCTLLINRFPNVHALMVLSFGEVCDQGAARHGVVWSGRDDKVGMFASHHICTIPGGLPAATSNFAGLCLLHHAARDREGCRTLEDLGGERRRSAVAEAVDALVGAQDFVAPQKGAAAFDGEKEALRAGVEENDEVFEEAFNAIRTRLGPALFTTQQRSDGGAAKYTAEERGAEKSTVELKAEGGEGCFCRCHFARKQDPKRFKDDCAAGARTATVNGQKVTVREGVWQGREAATPAEEAAMRRRSADSASGGELCFVFCGPPCTRAMSSPYKIRLCLTMQLACLSCSSH------------------SERETGKANQGRKITSSGGKRGXXXAARKGNPVISSVRTPIGFHR-RAYVTTTGKVKIGGK----STFYHYRDVRTPGSQKRILGLIQHDSHGSDKTLSYPVDDKGEMVTG 907
            MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQ +LGEAFFKIWELLQSQATATETPLPPPLAATTMTTSTNAPATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQPVQPVPQNKKRQRAVEPIAGALQELAGTPEEVQKFLRLSTEASPQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSKTMPPRVRELSRTFLDLTCTLLINRFPNVHALMVLSFGEVCDQGAARHGVVWSGRDDKVGMFASHHICTIPGGLPAATSNFAGLCLLHHAARDREGCRTLEDLGGERRRSAVAEAVDALVGAQDFVAPQKGAAAFDGEKEALRAGVEENDEVFEEAFNAIRTRLGPALFTTQQRSDGGAAKYTAEERGAEKSTVELKAEGGE    +    RKQDPK+F+DDCAAGARTATVNGQKVTVREGVWQGREAATPAEEAAM              +V  G   +R  S   KI    T   A L   +                    +   GK  QG+K+ SSGG RG   AA K    I++ RT I   R R+YV   G V+   +    S ++ Y+DVR     K I GL Q D++G ++ LSYP D  G+ ++G
Sbjct:  189 MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQQDLGEAFFKIWELLQSQATATETPLPPPLAATTMTTSTNAPATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQPVQPVPQNKKRQRAVEPIAGALQELAGTPEEVQKFLRLSTEASPQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRNILAAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGVCGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLLTGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSKTMPPRVRELSRTFLDLTCTLLINRFPNVHALMVLSFGEVCDQGAARHGVVWSGRDDKVGMFASHHICTIPGGLPAATSNFAGLCLLHHAARDREGCRTLEDLGGERRRSAVAEAVDALVGAQDFVAPQKGAAAFDGEKEALRAGVEENDEVFEEAFNAIRTRLGPALFTTQQRSDGGAAKYTAEERGAEKSTVELKAEGGEASMKK----RKQDPKKFQDDCAAGARTATVNGQKVTVREGVWQGREAATPAEEAAMXXXXXXXXXXXXXAWVRDGKLVSRDTSGAVKI----TSGGASLKGKADYAEGAALPGGGTSKGTQKGKAAAGKKMQGKKMHSSGGSRGPGAAA-KTYVDINAYRTLIVSSRHRSYVKEDGTVRTSARRRSESKWFAYKDVRGINGGKDIFGLKQFDTNGKERNLSYPSDASGKDLSG 1109          
BLAST of mRNA_Ecto-sp6_S_contig83.17490.1 vs. uniprot
Match: A0A6H5KQA2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA2_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 1.750e-108
Identity = 204/331 (61.63%), Postives = 219/331 (66.16%), Query Frame = 0
Query:    1 MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQAN---LGEAFFKIWELLQSQATAT-----------------------------------ETPLPPPL------------------------------AATTMTTS------TNAPATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQ 257
            MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEP TPSIHAGFVGANG+LKPAGF  W+QA+   + EAF KIWELLQSQATA                                    ET L   L                              + T +T+S        APATLVV++NRTGWIDG GG+GGKD R VQFD+ ASLL+RSASGTT+ Q YDVRGIGVHIGPSLNAGHYKAFVAGR+DTWVCADDADTTEVSW DV KVNPTIMVLER  GGG AATHGTDV AFWSAAVAAAR QASG  GQ   +    GP  Q
Sbjct:  189 MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQASRQDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 519          
BLAST of mRNA_Ecto-sp6_S_contig83.17490.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.190e-6
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 0
Query:  102 APATLVVMINRTGWIDGTGGHGG-KDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLER 209
            APA L + + R  +  G G  GG K  R + +  V ++ +          RY ++G+ VH+G S+N GHY A+V G N+ W   DD+ T +V  ++       I+   R
Sbjct:  258 APAVLCIQLKRFSFGFGGGFFGGGKITRFIPYPEVLTVDITGGRARREAVRYRLQGVVVHVGQSVNVGHYFAYVRGANNLWYLKDDSSTQQVPRKEALSQKAYILFYVR 366          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFQ3_ECTSI0.000e+085.16Ubiquitin carboxyl-terminal hydrolase family prote... [more]
A0A6H5KQA2_9PHAE1.750e-10861.63USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1U5Y3_9STRA4.190e-631.19Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 96..202
e-value: 1.2E-7
score: 31.5
NoneNo IPR availableGENE3D3.90.70.10coord: 78..210
e-value: 4.2E-13
score: 51.3
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 1..210
score: 10.076
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 93..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:118201..125796 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17490.1mRNA_Ecto-sp6_S_contig83.17490.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig83 116290..125796 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig83.17490.1 ID=prot_Ecto-sp6_S_contig83.17490.1|Name=mRNA_Ecto-sp6_S_contig83.17490.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=907bp
MLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANG
ILKPAGFKAWEQANLGEAFFKIWELLQSQATATETPLPPPLAATTMTTST
NAPATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQ
RYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKV
NPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSND
ALGPPNQPVQPVPQNKKRQRAVEPIAGALQELAGTPEEVQKFLRLSTEAS
PQQLGLCRALLKDGGAGLLSAKHASNGCRIYRGGATSGSDLGPATIRNIL
AAASQTRGPVGDMAAVLDGPESTERRRAEEGLRRLRVAAKAGDVVAFLGV
CGEIDVSIHIDTTHPAFANNAGRTEPLLVGWGACPKYAESPFYDPDCPLL
TGKLWRAAVKASPFGGDAGGAIAALNKNNSCSRSVHDRGGNCFDSKTMPP
RVRELSRTFLDLTCTLLINRFPNVHALMVLSFGEVCDQGAARHGVVWSGR
DDKVGMFASHHICTIPGGLPAATSNFAGLCLLHHAARDREGCRTLEDLGG
ERRRSAVAEAVDALVGAQDFVAPQKGAAAFDGEKEALRAGVEENDEVFEE
AFNAIRTRLGPALFTTQQRSDGGAAKYTAEERGAEKSTVELKAEGGEGCF
CRCHFARKQDPKRFKDDCAAGARTATVNGQKVTVREGVWQGREAATPAEE
AAMRRRSADSASGGELCFVFCGPPCTRAMSSPYKIRLCLTMQLACLSCSS
HSERETGKANQGRKITSSGGKRGGGGAARKGNPVISSVRTPIGFHRRAYV
TTTGKVKIGGKSTFYHYRDVRTPGSQKRILGLIQHDSHGSDKTLSYPVDD
KGEMVTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf