mRNA_Ecto-sp6_S_contig8.16961.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.16961.1
Unique NamemRNA_Ecto-sp6_S_contig8.16961.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.16961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:20433..20764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size332
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350401.9931066-UTR-Ecto-sp6_S_contig8:20432..204551682350401.9931066-UTR-Ecto-sp6_S_contig8:20432..20455Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 20433..20455 +
1682350402.0138996-UTR-Ecto-sp6_S_contig8:20665..207641682350402.0138996-UTR-Ecto-sp6_S_contig8:20665..20764Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 20666..20764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350402.0034275-CDS-Ecto-sp6_S_contig8:20455..206651682350402.0034275-CDS-Ecto-sp6_S_contig8:20455..20665Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 20456..20665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.16961.1prot_Ecto-sp6_S_contig8.16961.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 20456..20665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.16961.1

>prot_Ecto-sp6_S_contig8.16961.1 ID=prot_Ecto-sp6_S_contig8.16961.1|Name=mRNA_Ecto-sp6_S_contig8.16961.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp
MASRTDRTRGTLCVLLKTPIIVMMPCHERRPSHANTRVRGRWTSHAGNTL
RQNAKDKSAPREASREARS*
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mRNA from alignment at Ecto-sp6_S_contig8:20433..20764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.16961.1 ID=mRNA_Ecto-sp6_S_contig8.16961.1|Name=mRNA_Ecto-sp6_S_contig8.16961.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=332bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:20433..20764+ (Ectocarpus species6 EcLAC_371)
TCTGCATTAAGATCCGCGGTACGATGGCGTCACGAACGGATAGAACGAGG
GGCACGCTGTGTGTATTGCTGAAGACTCCAATCATCGTAATGATGCCGTG
CCACGAACGGAGGCCAAGCCACGCGAACACTAGGGTGAGAGGGAGATGGA
CATCACACGCAGGAAACACGCTGCGGCAAAATGCGAAGGACAAATCGGCA
CCCAGAGAGGCATCCAGAGAGGCAAGGAGCTAGGCAACTCAACCCGCTTT
TGACACAAGCACTCCTCCCCTCTCCGCTCGCCCTGCACCGAGAGGCCGAC
GATATCCCAAGCAGCGCAGGGCGGAACCCAAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:20433..20764+

>mRNA_Ecto-sp6_S_contig8.16961.1 ID=mRNA_Ecto-sp6_S_contig8.16961.1|Name=mRNA_Ecto-sp6_S_contig8.16961.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:20433..20764+ (Ectocarpus species6 EcLAC_371)
ATGGCGTCACGAACGGATAGAACGAGGGGCACGCTGTGTGTATTGCTGAA
GACTCCAATCATCGTAATGATGCCGTGCCACGAACGGAGGCCAAGCCACG
CGAACACTAGGGTGAGAGGGAGATGGACATCACACGCAGGAAACACGCTG
CGGCAAAATGCGAAGGACAAATCGGCACCCAGAGAGGCATCCAGAGAGGC
AAGGAGCTAG
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