mRNA_Ecto-sp6_S_contig8.16960.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.16960.1
Unique NamemRNA_Ecto-sp6_S_contig8.16960.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 3.090e-97
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1
Query:   55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 483
            +ALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGF+KTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR
Sbjct:    2 TALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 144          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 4.460e-64
Identity = 114/143 (79.72%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   58 ALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            ALVDARKRT V KWANAYDDRTSEYGGCDPDGCKAS TRD+SW+DESRWSCSEKLEDAQC ITY FEEPQDIVRIKI                +  FKK ITSSGTSS YETWDINTDETKWLSMEALNLDDDEWISITEVR+
Sbjct:  607 ALVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.580e-19
Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQD-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            +A+V+A    TV   A+ YD   S   GCDP GC A LTRD      ESRWSC   L DA  +C+ITY       +  + I  YKGDER RTL +   +    T TSSGT++ YET +++T   +W+S+  + L+D EW+SI EV +
Sbjct:   23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDT-MAQWISVVGV-LEDSEWLSIMEVEI 167          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.320e-18
Identity = 61/147 (41.50%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   55 SALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRD-QSWQDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            +A V+A     V   A  YD R S   GCDP GC A LTRD  +   ESRW+C   L DA  +C+ITY       +  + I  YKGDER RTL++   +    T TSSGT++ +ET +++T   +W+S+  + L D EW+SI EV++
Sbjct:    5 AASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDT-MGRWISIVGV-LADSEWLSIMEVKI 149          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.360e-16
Identity = 58/161 (36.02%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   37 AVLGTSSALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDA-------QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDIN----TDETKWLSMEALNLDDDEWISITEVRM 486
            A   T    V+A + TTV    NA+D RT +  GC PDGC    TRD    D SRWSCS  L +A       +C++ ++  E Q +  + + F KGD R RTL +  +    + +TS GT+S  ET++++          L ME+  L  DE++SI EV +
Sbjct:  239 AAAPTXXXAVEAGEVTTVTVTTNAFDARTDD-DGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEI 398          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.810e-15
Identity = 63/163 (38.65%), Postives = 87/163 (53.37%), Query Frame = 1
Query:   13 GLFALAFAAVLGTSSALVDARKRTTVNKWANAYDDR-TSEYGGCDPDGCKASLTRD-QSWQDESRWSCSEKLEDAQ--CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTI-TSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            GL A          +A+V+A    TV   A  YD   T+  GGC P GC    TRD  +   ESRWSC   L DA   C+ITY       +  + I  YKGDER RTL++   D    T+ TSSGT++ +ET +++T   +W+ +  + L+D EW+SI EV +
Sbjct:    9 GLLAAGAGPSSSALAAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEI-NIDNLPYTVWTSSGTTTDFETIEVDT-MGRWIDIVGV-LEDSEWLSIMEVEI 168          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.010e-11
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   40 VLGTSSALVDARKRTTVNKWANAYDDRTSEYGG------CDPDGCKASLTRDQ-SWQDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEV 480
            +L   +  V+   +T V+  A AYD R     G         +GC  + TRD  S + ESRWSC+ K+      C+I Y F EPQDI  IK+ F+ GDERVRTL++   DG       S   S + +  ++      + +E+++L ++EWIS+ EV
Sbjct:  471 LLTVGTDAVEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVY-FDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625          
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Match: UPI0014728A14 (hypothetical protein n=1 Tax=Neobacillus soli TaxID=220688 RepID=UPI0014728A14)

HSP 1 Score: 55.8 bits (133), Expect = 1.820e-7
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  262 PQDIVRIKIKFYKGDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALN--LDDDEWISITEVRM 486
            PQDI +I I F+ G  R RTL +  +  +  TITSSG +  +ET+D+ TDETK L +   +   + D W+SITEV +
Sbjct:    1 PQDIEKIAIAFHLGTSRTRTLDVFNNHYYHSTITSSGKTDGFETFDLYTDETKELKLCVFDPKWNTDVWLSITEVEI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.16960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G122_ECTSI3.090e-9798.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE4.460e-6479.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI1.580e-1942.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE6.320e-1841.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G277_ECTSI8.360e-1636.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL74_9PHAE7.810e-1538.65F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JTT4_9PHAE4.010e-1135.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0014728A141.820e-744.16hypothetical protein n=1 Tax=Neobacillus soli TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:18338..19292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score99.0
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D7FL48
Model size492
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size492
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350401.9529984-CDS-Ecto-sp6_S_contig8:18337..187711682350401.9529984-CDS-Ecto-sp6_S_contig8:18337..18771Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 18338..18771 -
1682350401.9646077-CDS-Ecto-sp6_S_contig8:19234..192921682350401.9646077-CDS-Ecto-sp6_S_contig8:19234..19292Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 19235..19292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.16960.1prot_Ecto-sp6_S_contig8.16960.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 18338..19292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.16960.1

>prot_Ecto-sp6_S_contig8.16960.1 ID=prot_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=164bp
MHSFGLFALAFAAVLGTSSALVDARKRTTVNKWANAYDDRTSEYGGCDPD
GCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYK
GDERVRTLKLKGSDGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLD
DDEWISITEVRME*
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mRNA from alignment at Ecto-sp6_S_contig8:18338..19292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.16960.1 ID=mRNA_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=955bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:18338..19292- (Ectocarpus species6 EcLAC_371)
ATGCACTCCTTTGGTCTTTTTGCCCTGGCCTTCGCCGCTGTGCTTGGCAC CTCCTCTGGTAAGCGATGTGCAACAATATCTAACGGCTGTGCGGATTTGC GTTTTGTGTCCCTATCGAGGTCTTGTGAGAATGGCATCTGCGGATTCACG TTTCCCTGTCGAAGTCTTTTTGCTTCAAGACGCGACGACCATGGCCCACA AGGACAGCACGGTAGCCCCACAGTCTGCGCCTAGGCATCTAAGCGCGCGC CTATGCGTGTGCCTCTCCGTGGCTCGTCGACTGTGGATGCAATGTAGAGC CACCCTCCACATGCTGCACTTAGACTGACTGAAGGGGTAGTTCTTCGTCG ATTCTTCACCTTCCAAATCTTATTCGACACTCGCACACCCACATGCGTAG TCTTGTGCGCAAGCTGGCAGTGCCCAAAACCACCCGCTACTTTCTTCCTT CCTTGTCTCTAACCCCCCCCCCCCGGCGACCATTGCTTCCGATCTTTGAT CACAACATCGAAAAATGACAGCCCTCGTTGACGCGCGCAAGAGGACCACC GTCAACAAGTGGGCCAACGCCTACGACGACAGGACGTCAGAGTACGGCGG CTGCGACCCCGACGGCTGCAAGGCCTCCCTCACGCGCGACCAGAGCTGGC AAGACGAGTCCCGCTGGAGCTGCAGCGAGAAGCTCGAAGACGCCCAGTGC AAGATCACGTACAAGTTCGAAGAGCCCCAAGACATCGTGCGCATCAAGAT CAAGTTCTACAAGGGGGACGAGCGCGTCCGGACCCTGAAGCTCAAGGGCA GCGACGGGTTCAAGAAAACCATCACCTCTAGCGGAACGTCCAGCAAGTAC GAGACGTGGGACATCAACACCGACGAGACTAAGTGGTTGAGCATGGAGGC GCTGAACCTCGACGACGACGAGTGGATCAGCATCACCGAGGTGCGGATGG AATAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:18338..19292-

>mRNA_Ecto-sp6_S_contig8.16960.1 ID=mRNA_Ecto-sp6_S_contig8.16960.1|Name=mRNA_Ecto-sp6_S_contig8.16960.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:18338..19292- (Ectocarpus species6 EcLAC_371)
ATGCACTCCTTTGGTCTTTTTGCCCTGGCCTTCGCCGCTGTGCTTGGCAC
CTCCTCTGCCCTCGTTGACGCGCGCAAGAGGACCACCGTCAACAAGTGGG
CCAACGCCTACGACGACAGGACGTCAGAGTACGGCGGCTGCGACCCCGAC
GGCTGCAAGGCCTCCCTCACGCGCGACCAGAGCTGGCAAGACGAGTCCCG
CTGGAGCTGCAGCGAGAAGCTCGAAGACGCCCAGTGCAAGATCACGTACA
AGTTCGAAGAGCCCCAAGACATCGTGCGCATCAAGATCAAGTTCTACAAG
GGGGACGAGCGCGTCCGGACCCTGAAGCTCAAGGGCAGCGACGGGTTCAA
GAAAACCATCACCTCTAGCGGAACGTCCAGCAAGTACGAGACGTGGGACA
TCAACACCGACGAGACTAAGTGGTTGAGCATGGAGGCGCTGAACCTCGAC
GACGACGAGTGGATCAGCATCACCGAGGTGCGGATGGAATAA
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