mRNA_Ecto-sp6_S_contig111.1512.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig111.1512.1
Unique NamemRNA_Ecto-sp6_S_contig111.1512.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 743 bits (1919), Expect = 1.390e-265
Identity = 382/394 (96.95%), Postives = 385/394 (97.72%), Query Frame = 1
Query:    1 RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKS RRGDFPELEK VLALIEEARRVPLPITRATIESFGIAVR KLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTS VLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDE G+Y RLLPKRTYLSTTEKRKTARGTKGMKAKD VSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA SD+ATFKKWWL+VFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTI R
Sbjct:  103 RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSFVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDETGMYYRLLPKRTYLSTTEKRKTARGTKGMKAKDRVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANAWSDNATFKKWWLEVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTITR 496          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5KD82_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD82_9PHAE)

HSP 1 Score: 424 bits (1091), Expect = 2.460e-141
Identity = 220/394 (55.84%), Postives = 279/394 (70.81%), Query Frame = 1
Query:    1 RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            R RL+  ++L++LK+LD+K ++A+IA R+  S   I      RQ++E A A    S   K  R+GDFPE+++  L L+++AR+  +P+TR  + SFG + R  L+A  +T A  +ER+  F A E+W +N V R+ + SV LHGEAGS+D EA  EGM  IR  C KY    IFNVDE G+  +L+P+RTYLST+E RKTARG+K M  KD +SA MC NA GTAKV MAIIGRAK PRCF++  SPL YFSQ NA SDSATF +WWL+VF+PF+R++THEPVLLLMDGC+SH  LVD RGQ+ V TYPP CT  +QPMD+GVI  TK  Y K LLD++ STM   DTLR QAK RKM AGT+GLA+GH  H+ DAAELL+ AW  VT   IAR
Sbjct:   89 RARLDSNKKLDILKMLDQKVSHAQIADRFKCSLRFIGTANAGRQKVETATAAGCGS--QKIARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSARATLLAGTATSAAVRERVEDFKAGERWAKNFVKRNQIQSVRLHGEAGSVDKEAIKEGMEEIRALCEKYPARFIFNVDETGLQWKLMPRRTYLSTSEDRKTARGSKSMHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLKYFSQTNAWSDSATFLRWWLEVFLPFLRRFTHEPVLLLMDGCSSHSHLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYGKELLDVKTSTMLMADTLRAQAKARKMKAGTLGLAQGHQPHVRDAAELLQKAWASVTAQDIAR 480          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5L4D9_9PHAE (DDE-1 domain-containing protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D9_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 3.870e-135
Identity = 208/383 (54.31%), Postives = 271/383 (70.76%), Query Frame = 1
Query:   34 VLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            +LKL+D+K T+ ++A R+  S   +  +K  R++ E  AA   R  + K+ R G+ PE++   L L+E+AR+  +P+TR  + SFG A R  L+A P+   + K R+  F A E+W RN V R+++ SV LHGEAGS++ EA  E M  ++  C+KY    I NVDE G+  +L+P+R YLS  E RKTARG+KGM  KD +SA MC NA GTAKV M+IIG+AK PRCF  +PSPL YFSQANA SD+ATF+KWW +VF+PF+R++THEPVLLLMDGCASHGDLVD RGQ+ +  YPPNCT  +QP+D+G+I  TK  YRK LLD++ STM   DTLR +AK RKM AGTMGLA+GH  H+ DAAELL+ AW  VT   IAR
Sbjct:    1 MLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYETEAAAG-RGGSKKNVRTGNNPEVDAIALDLLEKARKTKMPVTRDVLRSFGRAARATLLADPAASKEVKARVEDFKAGERWARNFVKRNSIDSVRLHGEAGSVNKEAIKEAMEELKALCAKYLARLIVNVDETGLQWKLMPRRMYLSNLEDRKTARGSKGMFFKDRLSAIMCANADGTAKVDMSIIGKAKGPRCFNDTPSPLKYFSQANAWSDTATFRKWWCEVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTIKFYPPNCTSVHQPVDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIAR 382          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5K1S6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S6_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 1.490e-126
Identity = 215/394 (54.57%), Postives = 262/394 (66.50%), Query Frame = 1
Query:    1 RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            R RL+  ++LE LK+LD+K ++A+IA R+  S   I  +K  RQ++E A A    S   K+ R+ DFPE   G L           P  RA         R  L+A  +T A  +ER+  F A ++W +N V R+ + SV LHGEAGS+D EA  EGM  IR  C KY    IFNVDE G+  +L+PKRTYLST+E RKTARG+K M  KD ++A MC NA GTAKV MAIIGRAK PRCF++  SPL      NA SDSATF KWWL+VF+PF+R++THEPVLLLMDGC+SH DLVD RGQ+ V TYPP CT  +QPMD+GVI  TK  YRK LLD++ STM   DTLR QAK RKM AGTMGLA+GH  H+ DAAELL+ AW  VT   IAR
Sbjct:   41 RARLDNNKKLEFLKMLDQKVSHAQIADRFKCSLRFIGTVKAGRQKVETATAAGCGS--QKTARKEDFPE---GTLR----------PPARAA------QCRATLLADTATSAAVRERVEDFKAGQRWAKNFVKRNKIQSVRLHGEAGSVDKEAIKEGMGEIRALCEKYPARFIFNVDETGLQWKLMPKRTYLSTSENRKTARGSKSMHLKDRLAAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLQVLLADNAGSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIAR 413          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5KUT5_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT5_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 1.540e-124
Identity = 190/309 (61.49%), Postives = 231/309 (74.76%), Query Frame = 1
Query:  256 LPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            +P+TR  + SFG + R  L+A  +T A  + ++  F A EKW +N V R+N+ SV LHGEAGS++  A  EGM  +R  C+KY    IFNVDE G+  +LLP+RTYLST+E RKTARG+K M  KD +SA+MC NA GTAKV MAIIGRAK PRCF+S+PSPL Y+SQ NA SDSATF KWWL+VF+PF+R++THEPVLLLMDGCASHGDLVD RGQ+ V  YPP CT  +QPMD+G+I  TK  +RK LLD++ STM   DTLR QAK RKM AGTMGLA+GH  HL DAAELL+ AW  +T   IAR
Sbjct:   20 MPVTRDVLRSFGRSARTTLLADTATSAAVRAKVEDFRAGEKWAKNFVKRNNIHSVRLHGEAGSVNMAAIKEGMDEVRALCAKYPARFIFNVDETGLQWKLLPRRTYLSTSEDRKTARGSKSMYFKDRLSAFMCCNADGTAKVDMAIIGRAKEPRCFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTVKFYPPKCTSVHQPMDLGIIAKTKVVFRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIAR 328          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5KWS4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS4_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 1.440e-123
Identity = 183/308 (59.42%), Postives = 227/308 (73.70%), Query Frame = 1
Query:  256 LPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIA 1179
            +P+TR  + SFG A R  L+A P+   + K R+  F A E+W RN V R+++ SV LHGEAGS++ EA  E M  ++  C+KY    IFNVDE G+  +L+P+RTYLS  E RKT RG++GM  KD +SA MC NA GTAKV M+IIG+AK PRCF  +PSPL YFSQANA SD+ATF+KWW +VF+PF+R++THEPVLLLMDGCASHGDLVD RGQ+ +  YPPNCT  +QPMD+G+I  TK  YRK LLD++ STM   DTLR +AK RKM AGTMGLA+GH  H+ DAAELL+ AW  VT   IA
Sbjct:    1 MPVTRDVLRSFGRAARATLLADPAASKEVKARVEDFKAGERWARNFVKRNSIDSVRLHGEAGSVNKEAIKEAMEELKALCAKYPARLIFNVDETGLQWKLMPRRTYLSNLEDRKTGRGSRGMFFKDRLSAIMCANADGTAKVDMSIIGKAKGPRCFNDTPSPLKYFSQANAWSDTATFRKWWCEVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTIKFYPPNCTSVHQPMDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIA 308          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5JP23_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP23_9PHAE)

HSP 1 Score: 379 bits (972), Expect = 2.170e-119
Identity = 190/309 (61.49%), Postives = 231/309 (74.76%), Query Frame = 1
Query:  256 LPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            +P+TR  + SFG + R  L+A  +T A  + ++  F A EKW +N V R+N+ SV LHGEAGS++  A  EGM  +R  C+KY    IFNVDE G+  +LLP+RTYLST+E RKTARG+K M  KD +SA+MC NA GTAKV MAIIGRAK PRCF+S+PSPL Y+SQ NA SDSATF KWWL+VF+PF+R++THEPVLLLMDGCASHGDLVD RGQ+ V  YPP CT  +QPMD+G+I  TK  +RK LLD++ STM   DTLR QAK RKM AGTMGLA+GH  HL DAAELL+ AW  +T   IAR
Sbjct:    1 MPVTRDVLRSFGRSARTTLLADTATSAAVRAKVEDFRAGEKWAKNFVKRNNIHSVRLHGEAGSVNMAAIKEGMDEVRALCAKYPARFIFNVDETGLQWKLLPRRTYLSTSEDRKTARGSKSMYFKDRLSAFMCCNADGTAKVDMAIIGRAKEPRCFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTVKFYPPKCTSVHQPMDLGIIAKTKVVFRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIAR 309          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5J9E2_9PHAE (DDE-1 domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E2_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 2.970e-117
Identity = 180/307 (58.63%), Postives = 221/307 (71.99%), Query Frame = 1
Query:  262 ITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            +T   I SFG + +  L+ +  T    ++RL  F A +KW +N V R++L S  LHG AGS+D +   EGM  +R AC KY   NIFNVDE GI  +L+ +RTYL+  E RKT RG+K M+ KD +SA MC NATGTAKV +AIIG AKNPRCFR    PL YF+Q+NA SD  TFKKWW +VF+PFIR+WTHEPVLLLMDGC+SHGDL+DP GQ+EV  YPPNCT  +QPMDMG+I  TK  YR+ LLD +VSTM     LR +AK RKMA GT GLAEG+  H+LDAA+LL+ A  ++TPTTIAR
Sbjct:    6 VTGNVIRSFGRSAKATLLGSAKTTDSVRKRLEDFKAGDKWSKNFVKRNDLHSHKLHGTAGSVDHDRIKEGMEEVRAACEKYPARNIFNVDETGIQWKLIARRTYLAAFEDRKTTRGSKNMEFKDRISAIMCANATGTAKVSLAIIGTAKNPRCFRRRKCPLKYFAQSNAWSDGPTFKKWWQEVFLPFIRRWTHEPVLLLMDGCSSHGDLIDPVGQVEVVMYPPNCTSVHQPMDMGIIAATKVIYRRELLDAKVSTMLVAHALRAEAKSRKMARGTAGLAEGNHPHVLDAADLLKTARGRITPTTIAR 312          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5J7S2_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7S2_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 2.120e-114
Identity = 200/394 (50.76%), Postives = 254/394 (64.47%), Query Frame = 1
Query:    1 RTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            R RL+  ++LE+LK+LD+K ++A+IA R+      I  +K  RQ++E A A    S   K+ R+GDFPE+++  L L+++AR+  +P+TR  + SFG + R  L+A  +T A  +ER+  F A ++W +N V R+ + SV LHGEAGS+D EA  EGM  IR  C KY    I NVDE G+  +L+P+RTYLST+E RKTARG+K M  KD +SA MC NA GTAKV MAI+GRAK PRCF++  SPL YFSQ NA SDSATF K                        C    DLVD RGQ+ V TYPP CT  +QPMD+GVI  TK  YRK LLD++ STM   DTLR QAK RKM  GTMGLA+GH  H+ DAAELL+ AW  VT   IAR
Sbjct:   89 RARLDNNKKLEILKMLDQKVSHAQIADRFKCLLRFIGTVKAGRQKVETATAAGCSS--QKTARKGDFPEVDEIALDLLDKARKAKMPVTRDVLRSFGRSTRATLLADTATSAAVRERVEDFKAGKRWAKNFVKRNKIQSVRLHGEAGSVDKEAIKEGMEEIRALCEKYPARFIVNVDESGLQWKLMPRRTYLSTSEDRKTARGSKSMNFKDGLSAIMCCNADGTAKVYMAIMGRAKEPRCFKNGGSPLKYFSQTNAWSDSATFLK------------------------C----DLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARKMIVGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIAR 452          
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Match: A0A6H5JH32_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH32_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 5.980e-112
Identity = 195/381 (51.18%), Postives = 246/381 (64.57%), Query Frame = 1
Query:   43 LLDEKTTYAEIARRYSISTSAISLIK-GKRQQLEQAAATNARSTTSKSPRRGDFPELEKGVLALIEEARRVPLPITRATIESFGIAVRGKLVAAPSTPADAKERLRMFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYKVENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCTNATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*SDSATFKKWWLKVFIPFIRKWTHEPVLLLMDGCASHGDLVDPRGQIEVSTYPPNCTYKYQPMDMGVIETTKRYYRKGLLDIRVSTMSSVDTLRQQAKDRKMAAGTMGLAEGHPAHLLDAAELLEGAWDKVTPTTIAR 1182
            +LD+K ++A+IA R+  S   +  +K G+ +++E A A    S   K+ R+GDFPE+++  L L+E+AR+  +P+TR  + SFG + R  L+A  +T A  +E +  F A E+W +N V R+ + SV LHGE GS+D EA  +GM  IR    KY                    RTYLST+E RKTARG+K M  KD +SA MC NA GTAKV MAIIGRAK PRCF+   SPL YFSQ NA S SAT  KWWL+VF+PF+R++THEPVLLLMDGC+SH DLVD R ++ V TYPP CT  +QPM   VI  TK  YRK    ++ STM   DTLR Q K RKM AGTMGLA+GH  H+ DAAELL  AW  VT   IAR
Sbjct:    1 MLDQKASHAQIADRFKCSLRFMGTVKTGREKKVETAIAAGCGS--QKTARKGDFPEVDEIALDLLEKARKAIMPVTRDVLRSFGRSARATLLADTATSAAVREGVEDFKAGERWAKNFVKRNKIQSVRLHGETGSVDKEAIKKGMEEIRALYEKYPAG-----------------RTYLSTSEDRKTARGSKSMHFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKKGGSPLKYFSQTNAWSYSATLLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRERVTVKTYPPLCTAVHQPMGFAVIAKTKVNYRKEA-HVKTSTMLVADTLRAQTKARKMKAGTMGLAQGHQPHVRDAAELLSKAWASVTAQDIAR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig111.1512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNH6_9PHAE1.390e-26596.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD82_9PHAE2.460e-14155.84HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5L4D9_9PHAE3.870e-13554.31DDE-1 domain-containing protein n=8 Tax=Ectocarpus... [more]
A0A6H5K1S6_9PHAE1.490e-12654.57DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUT5_9PHAE1.540e-12461.49DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KWS4_9PHAE1.440e-12359.42DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JP23_9PHAE2.170e-11961.49DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5J9E2_9PHAE2.970e-11758.63DDE-1 domain-containing protein (Fragment) n=2 Tax... [more]
A0A6H5J7S2_9PHAE2.120e-11450.76HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JH32_9PHAE5.980e-11251.18HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig111contigEcto-sp6_S_contig111:316723..318503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score126.3
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog6669.EFX68856
Model size1182
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs38HJW@33154,3BCG5@33208,3CXR0@33213,420II@6656,KOG3105@1,KOG3105@2759
Cds size414
COG Functional cat.BD
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348806.144951-UTR-Ecto-sp6_S_contig111:316722..3171331682348806.144951-UTR-Ecto-sp6_S_contig111:316722..317133Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig111 316723..317133 -
1682348806.164931-UTR-Ecto-sp6_S_contig111:317547..3176971682348806.164931-UTR-Ecto-sp6_S_contig111:317547..317697Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig111 317548..317697 -
1682348806.1762676-UTR-Ecto-sp6_S_contig111:318296..3185031682348806.1762676-UTR-Ecto-sp6_S_contig111:318296..318503Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig111 318297..318503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348806.1559157-CDS-Ecto-sp6_S_contig111:317133..3175471682348806.1559157-CDS-Ecto-sp6_S_contig111:317133..317547Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig111 317134..317547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig111.1512.1prot_Ecto-sp6_S_contig111.1512.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig111 317134..317547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig111.1512.1

>prot_Ecto-sp6_S_contig111.1512.1 ID=prot_Ecto-sp6_S_contig111.1512.1|Name=mRNA_Ecto-sp6_S_contig111.1512.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=138bp
MFGASEKWVRNLVNRHNLTSVVLHGEAGSLDAEAAAEGMAAIRRACSKYK
VENIFNVDEIGIYSRLLPKRTYLSTTEKRKTARGTKGMKAKDCVSAYMCT
NATGTAKVPMAIIGRAKNPRCFRSSPSPLTYFSQANA*
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mRNA from alignment at Ecto-sp6_S_contig111:316723..318503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig111.1512.1 ID=mRNA_Ecto-sp6_S_contig111.1512.1|Name=mRNA_Ecto-sp6_S_contig111.1512.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1781bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:316723..318503- (Ectocarpus species6 EcLAC_371)
CGCACGCGGCTCAACTTCGGCCAGCAGCTTGAGGTTCTCAAGCTCTTGGA CGAGAAGACGACGTACGCCGAGATTGCCCGCCGCTACAGCATCAGCACCA GCGCGATTAGCTTGATCAAGGGCAAGCGACAGCAACTGGAGCAGGCAGCA GCAACCAACGCACGCAGTACAACATCCAAGAGCCCGCGAAGGGGAGATTT TCCGGAGGTACGTTCACTCTGTTTTTTAAATTGATCAATTTTATGTACTA CTGTATGTGTGTCGTTGTCATGTGTTTTTGGGAGGGAAAATTAGAATTAG ATCTGTGTTCGAGGAGCGTACTTTTTTTTTGGTGTTGGTCTGTGCAGCGA GCGTGCAACGCGTCTGGGGTTGGCATAATTGATACGCATTTGTACAAACT TGTACGCTTCTACATATGTACGGCAGTGTAGTCGGAAATTTGTTGAAAAA AAAATTCAGGAACGGAAATCAAATAAATAACGCTCCCCGAGGCAGGACTC CTTTTTTTACCAACACAGCTGTGTCTTGTTTTGTTTTGTGTCTTGAGGGT CTTGTTCCTCCTGCGACTGTCGTTGCATATATGTAGTTCTTTACCCCGCG CAACGTGTGTGACACGTACGAAATTATATACTGCAACCCGTGACGATTTG TTTTGGAGGCTAACAATCCTTGCTTCGAATGATGCGTACAGTATGTGCCG TCAAGTGTTCTCTTCACCGGACACGGCATTTCGGGCTGTGTCTCTACTGC TGCGCGACTCATGTGCCCCGTTTTCTGTCCCCAATTATTCTCGTAATTTT CTTCAGTTGGAGAAAGGCGTCCTGGCCTTGATAGAGGAAGCGCGGAGAGT GCCGCTGCCTATCACGCGTGCCACGATCGAGTCGTTCGGGATCGCCGTCA GGGGCAAGCTGGTGGCGGCGCCGTCAACTCCAGCGGACGCCAAAGAGAGG CTGCGGATGTTTGGCGCCAGCGAGAAGTGGGTGCGCAATTTGGTGAATCG CCACAACTTGACGAGTGTCGTGCTGCACGGCGAGGCCGGTAGCCTCGATG CCGAGGCCGCCGCCGAAGGCATGGCGGCGATCCGGCGGGCGTGCTCGAAG TACAAGGTGGAGAACATCTTCAACGTGGACGAGATTGGCATCTACTCTAG ACTGCTGCCGAAGCGCACGTACCTGTCAACAACGGAGAAGCGGAAGACGG CGAGGGGCACGAAGGGGATGAAGGCCAAAGACTGTGTGTCGGCCTACATG TGCACCAACGCCACCGGGACGGCGAAGGTTCCCATGGCGATCATCGGGAG GGCGAAGAACCCGCGCTGCTTTCGATCCTCGCCGAGTCCGCTCACCTACT TCTCTCAGGCGAATGCATGATCGGACAGCGCAACCTTCAAGAAGTGGTGG CTGAAGGTTTTCATCCCATTCATCCGGAAGTGGACTCACGAGCCGGTGCT GCTTCTCATGGACGGGTGCGCGTCGCACGGCGATCTGGTTGATCCTCGAG GCCAGATCGAGGTGAGTACGTACCCGCCCAACTGCACCTACAAGTACCAG CCAATGGACATGGGTGTCATCGAGACCACCAAGCGCTACTACCGGAAGGG TCTACTGGACATCCGCGTGTCAACCATGTCTTCGGTCGACACTCTTCGTC AGCAAGCGAAGGACCGCAAGATGGCCGCCGGTACGATGGGGTTGGCGGAA GGGCACCCGGCCCACCTCTTGGACGCGGCCGAGCTTCTGGAAGGGGCGTG GGACAAGGTCACGCCCACCACCATCGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig111:316723..318503-

>mRNA_Ecto-sp6_S_contig111.1512.1 ID=mRNA_Ecto-sp6_S_contig111.1512.1|Name=mRNA_Ecto-sp6_S_contig111.1512.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp6_S_contig111:316723..318503- (Ectocarpus species6 EcLAC_371)
ATGTTTGGCGCCAGCGAGAAGTGGGTGCGCAATTTGGTGAATCGCCACAA
CTTGACGAGTGTCGTGCTGCACGGCGAGGCCGGTAGCCTCGATGCCGAGG
CCGCCGCCGAAGGCATGGCGGCGATCCGGCGGGCGTGCTCGAAGTACAAG
GTGGAGAACATCTTCAACGTGGACGAGATTGGCATCTACTCTAGACTGCT
GCCGAAGCGCACGTACCTGTCAACAACGGAGAAGCGGAAGACGGCGAGGG
GCACGAAGGGGATGAAGGCCAAAGACTGTGTGTCGGCCTACATGTGCACC
AACGCCACCGGGACGGCGAAGGTTCCCATGGCGATCATCGGGAGGGCGAA
GAACCCGCGCTGCTTTCGATCCTCGCCGAGTCCGCTCACCTACTTCTCTC
AGGCGAATGCATGA
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