mRNA_Ecto-sp6_S_contig110.1475.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1475.1
Unique NamemRNA_Ecto-sp6_S_contig110.1475.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A835Z1L6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.040e-16
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  100 QEHVEEKASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDA 300
            +EH     SA+EL+P   L+ +H GD+RA+F++LGE PGKALK+PP +A +FAR Y  GGYTY   A
Sbjct:   26 KEHAAGGPSADELKPIVALYERHGGDVRAIFEELGEHPGKALKHPPSDAADFARRYLGGGYTYTESA 92          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A7S2SCV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCV1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.420e-11
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   58 LSKGAKSLRHTGVPQEHVEEKASAE----ELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDAKS 306
            L  GAK+L+ T V     E K   E     +     L+ ++ G L  +FD+LGE+P KA KYPP +AE+FA+ Y  G +TYV  A++
Sbjct:   13 LQAGAKNLKETTVAPRKAEGKGGDELDDKTIASLVSLYDKYNGSLDDIFDELGENPSKAKKYPPRDAEDFAQRYYAGAFTYVDPARA 99          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A6A3MD80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3MD80_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.500e-10
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   31 RAVLLGAEDLSKGAKSLRHTGVPQEHVE----EKASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            RA  +   +L+K +K L  T   +EH +    + A AE+L+    L+ +   D++A+F++L E+P KALKYPP +A EF + Y +G YT
Sbjct:    5 RAAAVSESELNKASKGLHATKGTREHSDSLEYDPAVAEKLQA---LYEKFDADVKAIFEELDENPRKALKYPPTSAAEFGKKYAQGFYT 90          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A7S2FST1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FST1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-9
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   13 ADSKDDRAVLLGAEDLSKGAKSLRHTGVPQEHVEEKA---SAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYVPD 297
            A +K   A  LG  DL  GAK L+      +  E K    S   L     ++  H GD+ A++ +LGE+PGKA+KYPP  AE+FA+ Y  G  TY  D
Sbjct:   15 AQAKGGPAFSLG--DLQAGAKGLQQVEDAPKKAEGKGDDGSDAALGGLIEIWNNHGGDIEAIYAELGENPGKAIKYPPSGAEDFAQKYLDGKLTYDGD 110          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A6G0X775_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X775_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.010e-9
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  139 EPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYV 291
            E  E L+ +H+GDLR +F++L E+P KALK+PP +A +F   Y +G YTY 
Sbjct:   41 ERLEALYEKHRGDLRDIFEELDENPRKALKHPPADATDFGIKYAQGFYTYA 91          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: H3GEZ2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEZ2_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 3.640e-8
Identity = 29/86 (33.72%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   31 RAVLLGAEDLSKGAKSLRHTGVPQEHVEE-KASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            +   +   +L+K +K L  T   +EH +  +   +  E  + L+ +  GD++A+F++L E+P KA+KYPP +A EF + Y +G YT
Sbjct:  318 KGTAVSESELNKASKGLHATKGAREHSDSLEFDPQVAEKLQALYEKFDGDIKAIFEELDENPRKAVKYPPTSAAEFGKKYAQGFYT 403          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A067C478_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C478_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 5.580e-8
Identity = 32/97 (32.99%), Postives = 51/97 (52.58%), Query Frame = 1
Query:    1 MESKADSKDDRAVLLGAEDLSKGAKSLRHTGVPQEHVEEKASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYV 291
            MESK      +  L+   +L K + +L+ T     H   +      E     +++H GDL+ +F++L E+P KALK+PP +A +F   Y +G YTY 
Sbjct:    1 MESK------QQALVSDGELLKSSNNLKATKANPRHDSLEYDPAVAERLAATYKKHGGDLKDIFEELDENPRKALKHPPSDANDFGVKYAQGFYTYA 91          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A225W394_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W394_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.070e-8
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   31 RAVLLGAEDLSKGAKSLRHTGVPQEHVEE-KASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            R   +   +L++ +K L  T   +EH +  +   +  E  + L+ +  GD+ A+F++L E+P KALK+PP +A +F   Y +G YT
Sbjct:    5 RGAAVSESELNQASKGLHATKGTREHSDSLEFDPQVAEKLKALYEKFNGDINAIFEELDENPRKALKHPPTSATDFGTKYAQGFYT 90          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A1V9YFW8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFW8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.840e-7
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  154 LFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            L+ +H GDLR +F++L E+P KALK+PP +AE+F   Y +G YT
Sbjct:   53 LYTKHHGDLRDIFEELNENPRKALKHPPSDAEDFGVKYAQGFYT 96          
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Match: A0A3F2RDA1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RDA1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 28/86 (32.56%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   31 RAVLLGAEDLSKGAKSLRHTGVPQEHVEE-KASAEELEPYERLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYT 285
            ++  +   +L+K +K L  T   +EH +  +  +   +    L+ +  GD++A+F++L EDP KALK+PP +A +F   Y +G YT
Sbjct:    5 KSAAVSESELNKASKQLHATKGTREHSDSLEYDSSIADKVAVLYEKLDGDIKAIFEELQEDPRKALKHPPQSAADFGTKYAQGFYT 90          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z1L6_9STRA2.040e-1653.73Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2SCV1_9STRA9.420e-1140.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3MD80_9STRA4.500e-1038.20Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A7S2FST1_9STRA2.070e-939.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0X775_9STRA7.010e-949.02Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3GEZ2_PHYRM3.640e-833.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A067C478_SAPPC5.580e-832.99Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A225W394_9STRA8.070e-832.56Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1V9YFW8_9STRA1.840e-752.27Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A3F2RDA1_9STRA2.270e-732.56Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:213159..214605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score67.0
Seed ortholog evalue6.1e-09
Seed eggNOG ortholog115417.EPrPW00000017294
Model size321
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.function. Source PGD
EggNOG OGs1MI0R@121069,2D6UX@1,2T315@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000320.1
Cds size321
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348802.2273188-CDS-Ecto-sp6_S_contig110:213158..2132641682348802.2273188-CDS-Ecto-sp6_S_contig110:213158..213264Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 213159..213264 -
1682348802.2399812-CDS-Ecto-sp6_S_contig110:213611..2137241682348802.2399812-CDS-Ecto-sp6_S_contig110:213611..213724Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 213612..213724 -
1682348802.2489047-CDS-Ecto-sp6_S_contig110:214503..2146051682348802.2489047-CDS-Ecto-sp6_S_contig110:214503..214605Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 214504..214605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1475.1prot_Ecto-sp6_S_contig110.1475.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 213159..214605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1475.1

>prot_Ecto-sp6_S_contig110.1475.1 ID=prot_Ecto-sp6_S_contig110.1475.1|Name=mRNA_Ecto-sp6_S_contig110.1475.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
MESKADSKDDRAVLLGAEDLSKGAKSLRHTGVPQEHVEEKASAEELEPYE
RLFRQHKGDLRAMFDDLGEDPGKALKYPPPNAEEFARVYTRGGYTYVPDA
KSSNRK*
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mRNA from alignment at Ecto-sp6_S_contig110:213159..214605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1475.1 ID=mRNA_Ecto-sp6_S_contig110.1475.1|Name=mRNA_Ecto-sp6_S_contig110.1475.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:213159..214605- (Ectocarpus species6 EcLAC_371)
ATGGAGTCGAAGGCGGATTCTAAAGATGACAGGGCGGTGCTGCTTGGTGC GGAAGACCTGAGCAAGGGGGCAAAAAGCCTACGACACACTGGCGTTCCTC AGGTCCGTTCGATAAGTAAAACATTGCTTGTGCATTTTATCTTCCAATCA GAGGCGGGCCACTTCATCTCATCAATTTTATTATCTAGACTATTAAACCA ACACCTGACGTGTGTGTGATTCCCGTGTTTAGACCAACAACAACGTGGTG CGGTGTGCCGTCAATATGTGCAGATCGGGGATATTGAGAATGACATAAGA CACTCCTGTTGTAGGGGCTCCCGGGTGTAATCGTGGTTTTTAATGTGAAG ACCATAATAACACCAATCGCAGACCGATTACTAGTGTACGCCGACGTCGA GGATGGTACACTACAAGCTACCATATTCTACGGAAGAAAATACGTTTGCC ATCGAATTTTGCTTCCTTCAGTGGTGCGACAACCTTGTTCTGCTGTGCTT ACCCCTTCCGCAATCAACAGGTCAGAACGAGAGCTATTCTCGCTGACGTC TTGTTTAGGCTGTACTTCACAGTGGTATCATCTCTTCGGTCTTTGGGGGC AGTGGTAGAACTGTTGACCACTTAAACCAACTCCAAGCTGACTCTAGCAA TAAAATAATATACGAAGTACATATCCAGAGTTTGGCAGCAACTCCTGCAG GATAAGGCAGGGAAGGTGGGAGTAGATCGACAAAGGAAACGAATTTTTCC GTTATTGGTGGGCTGAAATCAGCTATGTATATGAAATGCATGCGATGTTT CTCCCTTCTGCTCTTGTGGGTGATGTACGCTTGTACATCCTTCTCGCAAA CGCAAGCATCATGCCCCCTGCAACATATTAGGAGCACGTGGAAGAGAAGG CGTCCGCAGAGGAGCTCGAGCCGTACGAGAGATTGTTCCGGCAGCACAAG GGAGACTTACGAGCAATGTTTGACGATCTTGGAGAGGATCCCGGGTACGA AAGTAGGGACAACAACATCATCGAGATCACCATTATGATGCCCGAATGAA CGACGGCCGATGGTACCAACCTTTCCTTCGTACAACTGGCCCAACCGCTG ATAGCGTTGAAAACAACGCCATGCAGGGTTGTCGACTCCCAGAAATTGAT TCGGCTCTGTTGCGGCCTTCGGCATCACGCGATCATACTTGCAATGTGAA TAGTTTCACATAGAACAAATCAGTGTTGATGGTAACCATTACCACTTGAA CTCCTTGGGCAGCCACGGCACCTCCACTTCATATTATCTGCAGTCTATCG CTGTTCCTGCCCACTCGTCGCTCGCTTTCCATTCGAGACAGAAAGGCGCT CAAATACCCTCCGCCAAACGCAGAAGAGTTCGCTAGGGTCTACACGAGGG GGGGGTACACCTACGTGCCCGACGCCAAGTCGTCAAACCGGAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:213159..214605-

>mRNA_Ecto-sp6_S_contig110.1475.1 ID=mRNA_Ecto-sp6_S_contig110.1475.1|Name=mRNA_Ecto-sp6_S_contig110.1475.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:213159..214605- (Ectocarpus species6 EcLAC_371)
ATGGAGTCGAAGGCGGATTCTAAAGATGACAGGGCGGTGCTGCTTGGTGC
GGAAGACCTGAGCAAGGGGGCAAAAAGCCTACGACACACTGGCGTTCCTC
AGGAGCACGTGGAAGAGAAGGCGTCCGCAGAGGAGCTCGAGCCGTACGAG
AGATTGTTCCGGCAGCACAAGGGAGACTTACGAGCAATGTTTGACGATCT
TGGAGAGGATCCCGGAAAGGCGCTCAAATACCCTCCGCCAAACGCAGAAG
AGTTCGCTAGGGTCTACACGAGGGGGGGGTACACCTACGTGCCCGACGCC
AAGTCGTCAAACCGGAAATGA
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