mRNA_Ecto-sp6_S_contig110.1455.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig110.1455.1
Unique NamemRNA_Ecto-sp6_S_contig110.1455.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig110.1455.1 vs. uniprot
Match: D7G4H9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H9_ECTSI)

HSP 1 Score: 782 bits (2019), Expect = 1.870e-283
Identity = 395/405 (97.53%), Postives = 396/405 (97.78%), Query Frame = 3 
Query:   15 MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSSGLAKRGGTCYFVRRRSIATATTPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDTTPSPPPDRAASGSRRDAQAERAESPAAFQESQPRLTLADQPGKFEGLHGQRDEEIPMDDDWSTSLVKGYLETEERKNSSGLRVRRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRAVVPTAAHIHRTTTDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWDDNVPRHNGSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR 1229
            MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSS LAKRGGTCYFVRRRSIATAT PRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDT PSPPPDRAASGSRRDAQAER ESPAAFQESQPRLTLAD PGKFEGLHGQRDEEIPMDDDWST LVKGYLETEERKNSSGLR RRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRAVVPTAA IHRT TDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWDDNVPRH+GSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR
Sbjct:    1 MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSSVLAKRGGTCYFVRRRSIATATPPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDTIPSPPPDRAASGSRRDAQAEREESPAAFQESQPRLTLADHPGKFEGLHGQRDEEIPMDDDWSTPLVKGYLETEERKNSSGLRARRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRAVVPTAAQIHRTMTDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWDDNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR 405
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BLAST of mRNA_Ecto-sp6_S_contig110.1455.1 vs. uniprot
Match: A0A6H5KQA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA9_9PHAE)

HSP 1 Score: 665 bits (1716), Expect = 2.300e-237
Identity = 347/405 (85.68%), Postives = 360/405 (88.89%), Query Frame = 3 
Query:   15 MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSSGLAKRGGTCYFVRRRSIATATTPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPDFDTTPSPPPDRAASGSRRDAQAERAESPAAFQESQPRLTLADQPGKFEGLHGQRDEEIPMDDDWSTSLVKGYLETEERKNSSGLRVRRPVLVLNGPACFIAGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRAVVPTAAHIHRTTTDASPASNNSGTAVHTEPADDGFPQPQQSRVDNPRQKTWDDNVPRHNGSGSALEYGLERAGCPVVIISPGRDGNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSVLDGSR 1229
            MR PLAK LAACKH V TDRAVRRWIGLPF+TT  S LAKRGGTC F R RSIAT+TT R GKGGA E  +RGSA   VHDIADLNKDISGFVGDLGDPDFDTTPSPPP RA SGSRR+AQAER ++PAAFQESQ RLTLAD PGK EGL G+RDEEIPMDDDWSTS VKGYLE  ERK+SSG R RR VLVLNGPACFIAGTLASTGEPRG VASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLR VVPTAA  H+  TDASPASN+SG A HTEPA+DGFPQ QQSRVD+PR KTW DNVPRH+GSGSALEYGLERAGCPVVIISPGRDGNLGANML STSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAV SVLDG R
Sbjct:    1 MRPPLAKTLAACKHLVLTDRAVRRWIGLPFSTT--SMLAKRGGTCCFARSRSIATSTTSRGGKGGAPEDGERGSAEFWVHDIADLNKDISGFVGDLGDPDFDTTPSPPPARAVSGSRRNAQAEREDTPAAFQESQTRLTLADHPGKVEGLAGERDEEIPMDDDWSTSFVKGYLEAVERKSSSGSRARRSVLVLNGPACFIAGTLASTGEPRGAVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYDAVVYNPSGFSNQGLRVVVPTAAPTHQMMTDASPASNSSGNAAHTEPAEDGFPQSQQSRVDDPRHKTWHDNVPRHSGSGSALEYGLERAGCPVVIISPGRDGNLGANMLQSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVSSVLDGFR 403
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4H9_ECTSI1.870e-28397.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQA9_9PHAE2.300e-23785.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:46517..49528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1533
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionDehydroquinase, class II
Ec32 orthologEc-07_000550.1
Cds size1218
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1455.1prot_Ecto-sp6_S_contig110.1455.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig110 46531..49227 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.7303424-UTR-Ecto-sp6_S_contig110:46516..465301682348800.7303424-UTR-Ecto-sp6_S_contig110:46516..46530Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig110 46517..46530 +
1682348800.7703247-UTR-Ecto-sp6_S_contig110:49227..495281682348800.7703247-UTR-Ecto-sp6_S_contig110:49227..49528Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig110 49228..49528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348800.7382565-CDS-Ecto-sp6_S_contig110:46530..468731682348800.7382565-CDS-Ecto-sp6_S_contig110:46530..46873Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 46531..46873 +
1682348800.7483616-CDS-Ecto-sp6_S_contig110:47235..475251682348800.7483616-CDS-Ecto-sp6_S_contig110:47235..47525Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 47236..47525 +
1682348800.7559135-CDS-Ecto-sp6_S_contig110:47983..480571682348800.7559135-CDS-Ecto-sp6_S_contig110:47983..48057Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 47984..48057 +
1682348800.763207-CDS-Ecto-sp6_S_contig110:48716..492271682348800.763207-CDS-Ecto-sp6_S_contig110:48716..49227Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig110 48717..49227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig110.1455.1

>prot_Ecto-sp6_S_contig110.1455.1 ID=prot_Ecto-sp6_S_contig110.1455.1|Name=mRNA_Ecto-sp6_S_contig110.1455.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=406bp
MRKPLAKALAACKHPVPTDRAVRRWIGLPFNTTRSSGLAKRGGTCYFVRR
RSIATATTPRWGKGGASEGDDRGSAAISVHDIADLNKDISGFVGDLGDPD
FDTTPSPPPDRAASGSRRDAQAERAESPAAFQESQPRLTLADQPGKFEGL
HGQRDEEIPMDDDWSTSLVKGYLETEERKNSSGLRVRRPVLVLNGPACFI
AGTLASTGEPRGVVASSMEDAAQEFNLSLTVCTSNREDELLDRLCEGGYD
AVVYNPSGFSNQGLRAVVPTAAHIHRTTTDASPASNNSGTAVHTEPADDG
FPQPQQSRVDNPRQKTWDDNVPRHNGSGSALEYGLERAGCPVVIISPGRD
GNLGANMLPSTSRGPDVDLGCRSERGAEGIIAGFSGAVSYRLAMAAVWSV
LDGSR*
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mRNA from alignment at Ecto-sp6_S_contig110:46517..49528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig110.1455.1 ID=mRNA_Ecto-sp6_S_contig110.1455.1|Name=mRNA_Ecto-sp6_S_contig110.1455.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3012bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:46517..49528+ (Ectocarpus species6 EcLAC_371)
CAGCAGTTTACCCAATGAGAAAGCCGTTGGCGAAGGCTCTGGCTGCTTGC
AAACACCCCGTCCCAACGGACAGGGCTGTGCGTCGCTGGATTGGGTTGCC
GTTCAACACCACCAGAAGTAGTGGTTTAGCCAAACGCGGCGGAACTTGTT
ATTTCGTCCGCCGCCGATCGATCGCGACTGCAACGACACCGAGATGGGGC
AAGGGGGGTGCATCAGAAGGAGACGACCGCGGCAGCGCGGCAATTTCGGT
CCACGATATCGCTGACCTGAATAAGGACATCTCTGGCTTTGTGGGAGACT
TGGGCGATCCTGACTTCGATACCACCCCCAGCCCTCCTCCTGATCGTGCC
GCCTCAGGTGCGATGTTTCAGTTGTTGCCTTCAACCGTTGCGACCTCTGC
TCACCTCTGCTCGGCACCTCTACTACTGTAATAGCCACACCCGCACAACT
TACGCGGACACCTTCCGTGGTCACTGGCCAACTACCCAAAAATGTACATC
GACAAAAAATAACCCCAAGAAAATTTGGACCCCGAAAGGCCCCCATTATC
ACCTTGGTATACGCAGTTGAGCGCTTGTTTCTTAGATGGAGCGGGGCTTG
TTGTACAATCTGTGCGTTGTGAACTCCCTCACGCGCATGTTTGCGCTTAG
CCCTTTGCGCGTGCACAGACGCCTATGACACCTCGATATGTTGTGCTTTT
TTGTACGCGCAATACTAAGGGTCTCGGCGGGATGCCCAAGCCGAGAGAGC
AGAAAGCCCCGCCGCGTTCCAAGAATCGCAGCCCCGGCTCACGCTGGCTG
ATCAACCCGGAAAATTCGAGGGGCTCCACGGACAGCGCGACGAAGAAATC
CCGATGGATGATGACTGGTCCACGTCGTTGGTCAAAGGGTACCTGGAGAC
CGAAGAGCGAAAGAACTCAAGTGGGCTAAGAGTAAGAAGGCCCGTCCTGG
TGCTAAACGGACCGGCGTGTTTTATTGCTGGGACACTAGCCAGCACCGGA
GAACCGCGGGTGAGTGCACGAAGTGAGGGTCAAGAACAGTCACGTGCGCT
CGCGATACAGCAGTGTCCCACCCTCTTTTGGCAGTAGTTATATCCGTGCG
TGAAGCACCTCCTCCAGTGCAGACAAGATTTTGACGGAAAGAGCATTGAA
AGATTCAGCCTTGCAACGCCTCAATGAAATGAACGCGCCTGGTCACCTGG
TCCCAACACGGCGGCAACGATACTCTTGGGTGACCCGGTGTAATATCCCT
GTGAGCTTGTGTTTTTTTATATCATGAGTGTAGTTGTTTTTGGAGCGACG
GGACGCTACGAAAAGTCATTCCCACACGCCTCTCACGAGTTTCACCCATG
GCCACCCTTGACGCCCTCAACTCCATGTCGACCAAACCGTTGCTCATATC
CTGTCCCATCCTTTGCGACGTACTTGTTCTGATCGCGTGCAATTTCACTT
GTTTTGGTTCGGAGAAGGGAGTGGTCGCGAGTTCAATGGAGGACGCCGCC
CAAGAGTTCAACCTGTCGCTGACTGTCTGCACTTCGAACCGGTGCGTAAT
CCCTGCAACACACAAAGTACTATCTAGGAGGCAGCCGACTGATACAGCAG
GCGAAGGGTAAAGCCATAAACCTATTCCCCGTAACGGCCAGAGAGTGCCG
CGTAGGCGAGCGCCTCTATTGGAAGTAGGTTGCTCGCGCCTCGGTCAACC
TCCCCCACACTGGAATCGGAAGGTGCTTTGTTCTTTGCCCGGCTCGAGAT
GTGAAGCAGGGCATGGTGATCACTTTGGCAATGAATTCATGCTTGTTGGT
TTAGGCGGAGTGTGTCGGCATGATATGGACTTCTTTTCACTTTACATATG
TTCATGCCAAGTGCAACTTTCAATTTTCCACGTTGTTGCGTAGTACCCCC
CGGCATGCAGTTCCTCGTGAACGGACTACGGTTTTCCTGCGCCCCTTTCC
CAGTAGGCTTCATGCAAAGGAAGCCGTGATGTCGGGCGAAGTTTAAGACC
GTACTGTTGGGGTATGATTATGAAGCGCTAGAGGCTGGGCCCATTGGCCA
TGACACGCAAGGAGAGTTTTTTTCCTTATTTGCATGTCGTACGTGTCATG
TTTTTTTTTCGGCAATACCCCGGGCTGCTGCACGCATAGAAACTGATGCC
TTCGTACTTGTGCCCGCCTGTGTTGATCGTAAATGATACGATGGGAACAG
AGAAGATGAGCTGTTGGACCGACTTTGCGAGGGGGGGTACGATGCTGTCG
TCTACAACCCCTCAGGGTTCAGCAACCAGGGGTTGCGAGCGGTGGTCCCA
ACTGCCGCCCATATTCACCGAACGACAACGGACGCATCTCCTGCATCAAA
CAACTCAGGCACCGCCGTTCACACCGAGCCGGCCGACGACGGTTTCCCAC
AACCGCAACAATCACGGGTTGATAATCCGCGACAGAAAACGTGGGATGAC
AACGTCCCGCGACACAATGGGAGCGGGAGCGCCCTAGAGTACGGTCTAGA
GCGTGCGGGATGCCCCGTCGTCATCATTTCACCTGGACGAGATGGAAATC
TGGGAGCAAACATGCTGCCATCCACCAGCCGTGGACCTGATGTGGACCTC
GGGTGTCGGTCGGAGCGAGGAGCGGAAGGAATAATCGCAGGATTTTCGGG
GGCTGTTTCTTACCGATTGGCGATGGCGGCAGTATGGAGCGTATTGGATG
GATCCCGATAGCACTGCTGTTATGCCTCGTGCGCTACCCTCGAATAGACC
TGAGACGATGTATTGGTCCTTCTTTTCACCTGACAACATGCCGTTCCGGG
TGTCTGCTGCCTGTCTAGCAATGGGGGAAGTGTTGCGCTAAAATCACATC
CGCTTCCCGGTTTTTCCCGCCAACCCAAGGCTTCTGCGGTTGCCCTTCGT
CTTTTACCAGAGGCGGTGTTCGGCAGCATTGATTTGGTCCAGTGACCAGA
ATTTGTTTTGAAATTTTTTCTCGGCAAATTCGGCGCACCCCGCGCTCCTT
TCACTGCTGTCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig110:46517..49528+

>mRNA_Ecto-sp6_S_contig110.1455.1 ID=mRNA_Ecto-sp6_S_contig110.1455.1|Name=mRNA_Ecto-sp6_S_contig110.1455.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp6_S_contig110:46517..49528+ (Ectocarpus species6 EcLAC_371)
ATGAGAAAGCCGTTGGCGAAGGCTCTGGCTGCTTGCAAACACCCCGTCCC
AACGGACAGGGCTGTGCGTCGCTGGATTGGGTTGCCGTTCAACACCACCA
GAAGTAGTGGTTTAGCCAAACGCGGCGGAACTTGTTATTTCGTCCGCCGC
CGATCGATCGCGACTGCAACGACACCGAGATGGGGCAAGGGGGGTGCATC
AGAAGGAGACGACCGCGGCAGCGCGGCAATTTCGGTCCACGATATCGCTG
ACCTGAATAAGGACATCTCTGGCTTTGTGGGAGACTTGGGCGATCCTGAC
TTCGATACCACCCCCAGCCCTCCTCCTGATCGTGCCGCCTCAGGGTCTCG
GCGGGATGCCCAAGCCGAGAGAGCAGAAAGCCCCGCCGCGTTCCAAGAAT
CGCAGCCCCGGCTCACGCTGGCTGATCAACCCGGAAAATTCGAGGGGCTC
CACGGACAGCGCGACGAAGAAATCCCGATGGATGATGACTGGTCCACGTC
GTTGGTCAAAGGGTACCTGGAGACCGAAGAGCGAAAGAACTCAAGTGGGC
TAAGAGTAAGAAGGCCCGTCCTGGTGCTAAACGGACCGGCGTGTTTTATT
GCTGGGACACTAGCCAGCACCGGAGAACCGCGGGGAGTGGTCGCGAGTTC
AATGGAGGACGCCGCCCAAGAGTTCAACCTGTCGCTGACTGTCTGCACTT
CGAACCGAGAAGATGAGCTGTTGGACCGACTTTGCGAGGGGGGGTACGAT
GCTGTCGTCTACAACCCCTCAGGGTTCAGCAACCAGGGGTTGCGAGCGGT
GGTCCCAACTGCCGCCCATATTCACCGAACGACAACGGACGCATCTCCTG
CATCAAACAACTCAGGCACCGCCGTTCACACCGAGCCGGCCGACGACGGT
TTCCCACAACCGCAACAATCACGGGTTGATAATCCGCGACAGAAAACGTG
GGATGACAACGTCCCGCGACACAATGGGAGCGGGAGCGCCCTAGAGTACG
GTCTAGAGCGTGCGGGATGCCCCGTCGTCATCATTTCACCTGGACGAGAT
GGAAATCTGGGAGCAAACATGCTGCCATCCACCAGCCGTGGACCTGATGT
GGACCTCGGGTGTCGGTCGGAGCGAGGAGCGGAAGGAATAATCGCAGGAT
TTTCGGGGGCTGTTTCTTACCGATTGGCGATGGCGGCAGTATGGAGCGTA
TTGGATGGATCCCGATAG
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