prot_Ecto-sp6_S_contig110.1453.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig110.1453.1
Unique Nameprot_Ecto-sp6_S_contig110.1453.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length518
Homology
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BLAST of mRNA_Ecto-sp6_S_contig110.1453.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.900e-36
Identity = 100/334 (29.94%), Postives = 146/334 (43.71%), Query Frame = 0 
Query:  120 DSRRKLLLNLTYLNLVLALVLIIVGSAGPKYPGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTEEVDGANDSILRSALTVGLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGSFAVVMVDINYIAGCCSLLEDNCEVSNLCTQFVDDCCISDAV-----------------------------------------------------------------------------------------------------------------QDYCGNPSYHVGAVSMMFLVFVSTSSMVIMASTITCRCWVDSDPEKQAMLMILTGSPY 340
            D R+ +LL +TY+NL L +V++++ + GP YPGH G         AD       S +Y   C + EV  ANDSIL SAL  G+VI   QP +A  I KQV + GA  TLL+S V A+TC  +F V+++D+ Y+A CC+ L++ CE S+LCT+ +D CCI  +V                                                                                                                 + YC +P Y     SM+F+VF+ST +  +MA TI C+CW+D+DPEKQA++M+++ SP+
Sbjct:   70 DLRQVILLRMTYVNLALGVVMVVLYALGPSYPGHFGALTQAR---AD-------SVIYGDTCASGEVADANDSILHSALIAGVVIWMLQPVAAWAIHKQVGQRGAHCTLLSSCVCAVTCACAFLVILLDMEYVADCCAQLQNECERSDLCTELIDTCCIGASVXXXXXXXXXXXXXXXXXXXXXVVSSSQYLMIEFILKSVVSALHDEYYNRRMYESDENHDSDSRSRCATHCERNRLYRQLMTSCMELVDMCGDEHKHGLIASSLLSLRCLDQQQESYCEDPKYRYAGASMIFVVFISTFAQAMMACTIGCKCWLDADPEKQALMMVVSSSPH 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig110.1453.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA6.900e-3629.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 422..443
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 420..448
score: 8.767
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 298..322
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 323..517
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 193..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 125..146
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 147..192
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..124
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 217..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 253..297
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 228..252
NoneNo IPR availableTMHMMTMhelixcoord: 291..313
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 125..147
NoneNo IPR availableTMHMMTMhelixcoord: 193..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig110contigEcto-sp6_S_contig110:21778..28487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig110.1453.1mRNA_Ecto-sp6_S_contig110.1453.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig110 21778..28487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig110.1453.1 ID=prot_Ecto-sp6_S_contig110.1453.1|Name=mRNA_Ecto-sp6_S_contig110.1453.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=518bp
DLVTEHLETSHASCTHKWKSGTGGSSISFEQSGGLSLEITSTANMSPGDT
SPRRRPAPIDVGGGGGIGQQQAGRWRQLSPTTADRLLAENGGIPGDTEIF
GETAYTPGGSPRFPSGGKQDSRRKLLLNLTYLNLVLALVLIIVGSAGPKY
PGHSGTTNNPVSTWADRRLTTHVSPLYQADCPTEEVDGANDSILRSALTV
GLVILFTQPFSARYIAKQVDRGGATATLLTSVVSALTCLGSFAVVMVDIN
YIAGCCSLLEDNCEVSNLCTQFVDDCCISDAVQDYCGNPSYHVGAVSMMF
LVFVSTSSMVIMASTITCRCWVDSDPEKQAMLMILTGSPYGSPRGRPESP
KFSPRNTVLSALRFGDTSGGRSANGGTPTRKSSHNQSVTARGEIRHGSGP
GLGGWEAGEEKSAVGPATREQCPQCGAVFGDVSTLLNHVERFHPKATKVT
GIPAPSRASVSSSSTTPESNNAGIGRDSARVRPSLARKGSTYEPDEGPVL
TVYPPSIHVAPARPSLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type