mRNA_Ecto-sp6_S_contig11.1229.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig11.1229.1
Unique NamemRNA_Ecto-sp6_S_contig11.1229.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: D7G827_ECTSI (40S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G827_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 3.270e-147
Identity = 228/241 (94.61%), Postives = 229/241 (95.02%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAKVVA 726
            +LNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYA            ARRSMISKRRSSRKASAKVVA
Sbjct:    2 KLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYASLYAQRQKEQKEARRSMISKRRSSRKASAKVVA 242
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A836CDZ2_9STRA (40S ribosomal protein S6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ2_9STRA)

HSP 1 Score: 348 bits (893), Expect = 4.260e-116
Identity = 185/239 (77.41%), Postives = 203/239 (84.94%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAKV 720
            +LNIA P TG+Q FIE DDEKKLRALYDKRISQEVEGEALG+EF+GY+FRISGGNDKQGFPMKQGVL  +RVRLLL KG+SCYR RR+GERKRKSVRGCIV +DLAVLNLV+ KKGE ++PGLTD  VPRRLGPKRAN IRKLFNL K+DDVRKYVIARKFEKKGKTVTKRP IQRLITP +LQR R RA+ KK AQ KS+ DA+EY             ARRS+ISKRRSSRKASAKV
Sbjct:    2 KLNIAFPTTGAQKFIECDDEKKLRALYDKRISQEVEGEALGEEFSGYVFRISGGNDKQGFPMKQGVLCNHRVRLLLSKGLSCYRPRRKGERKRKSVRGCIVGSDLAVLNLVIVKKGEGEVPGLTDVTVPRRLGPKRANKIRKLFNLSKEDDVRKYVIARKFEKKGKTVTKRPKIQRLITPAKLQRTRRRASLKKQAQVKSKADAAEYGRLYAQRMKEAKEARRSIISKRRSSRKASAKV 240
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: F0YLS6_AURAN (40S ribosomal protein S6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLS6_AURAN)

HSP 1 Score: 313 bits (801), Expect = 3.670e-102
Identity = 172/239 (71.97%), Postives = 190/239 (79.50%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFE-KKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAK 717
            +LNIA P TG+Q F+EIDDEKKLRALYD+RISQEV+GEALG+EFAGY+FRI+GGNDKQGFPMKQGVL  +RVRLLL  G SCYRQRR GERKRKSVRGCIV ADLAVLNLVV K+G+ DI GLTD PV  RLGPKRAN IRKLF L KDDDVRKYVIARKFE KKGK+VTK P IQRLITP+ LQRKR R   K  A  K++ +A EY             ARRS ISKRRSSRK+  +
Sbjct:    2 KLNIACPSTGAQKFLEIDDEKKLRALYDRRISQEVDGEALGEEFAGYVFRITGGNDKQGFPMKQGVLCNHRVRLLLRAGASCYRQRRAGERKRKSVRGCIVGADLAVLNLVVVKQGDADIEGLTDTPVAVRLGPKRANKIRKLFALTKDDDVRKYVIARKFENKKGKSVTKAPKIQRLITPLCLQRKRDRKRVKMAAITKAKAEAVEYNRVKTMRMQEQKDARRSAISKRRSSRKSKTQ 240
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: W7TEA2_9STRA (40S ribosomal protein S6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEA2_9STRA)

HSP 1 Score: 310 bits (794), Expect = 3.910e-101
Identity = 165/240 (68.75%), Postives = 192/240 (80.00%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFE-KKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAKV 720
            +LNIA+P TG Q  +EIDDEK+LRA YD+RISQEV+GE +GDEF GY+F+ISGGNDKQGFPMKQGVL+  RVRLLL KG+SCYR RR+GERKRKSVRG IV  DL+VLNLV+ K+GE+D+ GLTD+ VPRRLGPKRANNIRKLFNL KD DV  Y + RKFE KKGKTV K+P IQRLITP+RLQ KR R  AKK A  K++ +A+EY             +RRS ISKRRSSR+ASAKV
Sbjct:    2 KLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKV 241
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A7S2RIP4_9STRA (40S ribosomal protein S6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIP4_9STRA)

HSP 1 Score: 310 bits (793), Expect = 5.540e-101
Identity = 167/238 (70.17%), Postives = 192/238 (80.67%), Query Frame = 1 
Query:    7 LNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAK 717
             NI++P TG Q  I IDDE+KLRA+YD RI+QE++G ALG+EFAGY+FRISGGNDKQGFPMKQGVLS  RVRLLLHKG SCYRQR+ GERKRKSVRGCIV +DLAVLNLVVTKKG+ +I GLTDA VPRRLGPKRA+ IR+LFNL K+DDVRK V+ R FE K GKTVTK P IQRL+TP+ LQRKRAR AAK  A  K++ +A+EY+            ARRS ISKRRSSRK+S K
Sbjct:    3 FNISNPMTGCQKCITIDDERKLRAVYDLRIAQELDGSALGEEFAGYVFRISGGNDKQGFPMKQGVLSNTRVRLLLHKGASCYRQRKTGERKRKSVRGCIVGSDLAVLNLVVTKKGDAEIEGLTDASVPRRLGPKRASKIRQLFNLDKEDDVRKVVVRRSFENKAGKTVTKSPKIQRLVTPLTLQRKRARKAAKVAAVEKARTEAAEYSKLRAQRAREQKEARRSAISKRRSSRKSSKK 240
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A7S0LPA9_9EUKA (40S ribosomal protein S6 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPA9_9EUKA)

HSP 1 Score: 308 bits (790), Expect = 1.520e-100
Identity = 163/238 (68.49%), Postives = 187/238 (78.57%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAK 717
            ++NIA P TG+Q FI+IDDEKKLR LYDKRISQEV GE LGDEFAGY+FRISGGNDKQGFPMKQGVL+  RVRLLL +GVSCYR RR GERKRKSVRGCIV +DLAVLNLV+ KKG+ +I G TD  +P+RLGPKRA+ IR LFNL K DDVRKYVIAR FEKKGKT+TKRP IQRL+TP+ ++RK+ R    K A   S+ +A+ Y             ARRS ISKRRSSR+AS K
Sbjct:    2 KINIAYPATGNQKFIDIDDEKKLRTLYDKRISQEVNGEDLGDEFAGYIFRISGGNDKQGFPMKQGVLTNTRVRLLLKEGVSCYRARRVGERKRKSVRGCIVGSDLAVLNLVIIKKGDNEIEGFTDVSIPKRLGPKRASKIRNLFNLTKADDVRKYVIARTFEKKGKTITKRPKIQRLVTPVTIRRKKQREVKAKKALENSKAEAAAYTALVHKRIAEQKEARRSEISKRRSSRRASTK 239
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A7S3ZJK9_9STRA (40S ribosomal protein S6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJK9_9STRA)

HSP 1 Score: 297 bits (760), Expect = 5.530e-96
Identity = 162/242 (66.94%), Postives = 183/242 (75.62%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASAKVVA 726
            +LNIA P TG+Q ++E+DDEKKLRALYD RI  EVEGEALG+EF GY+FRISGGNDKQGFPMKQGVL  +RV+LLL  G SCYRQRR GERKRKSVRGC+V  DLAVLNLVV K+G+ +I GLTD  VP RLGPKRAN IRKLF L K+DDVRKYVI RKF KK GK VTK P IQRLITPI LQRKR     K    AK ++DA EY             +RRS +SKRRSSR++ A+  A
Sbjct:    2 KLNIACPSTGAQKWVEVDDEKKLRALYDNRIGAEVEGEALGEEFNGYVFRISGGNDKQGFPMKQGVLCNHRVKLLLRAGASCYRQRRSGERKRKSVRGCVVGPDLAVLNLVVVKQGDAEIEGLTDTQVPVRLGPKRANKIRKLFALSKEDDVRKYVIRRKFTKKNGKEVTKAPKIQRLITPIMLQRKRDMKRKKMAQVAKVKKDAEEYHRVQTQHIQAARASRRSAVSKRRSSRRSKAEATA 243
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A7S2WN65_9STRA (40S ribosomal protein S6 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WN65_9STRA)

HSP 1 Score: 288 bits (736), Expect = 2.390e-92
Identity = 152/237 (64.14%), Postives = 185/237 (78.06%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKF-EKKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKAS 711
            ++N+A P TG Q  +EIDDEK+L+ALY++R++QEV+G  LGDEFAGY+FRISGGNDKQGFPM+QG+L+  RVRLL  KG  CYR R  GERKRKSVRGCIV  D+AVLNLVVTK G++ + GLTD   PRRLGPKRANNIRKLFNL KDDDVR+YVIAR F  KKG TV K P IQRL+TP+ LQRKRAR A+K  +  ++Q +A+ Y+            ARRS+ISKRRS+RK++
Sbjct:    2 KINLACPSTGLQKIVEIDDEKRLQALYERRMAQEVDGSLLGDEFAGYVFRISGGNDKQGFPMRQGILTNTRVRLLCKKGDKCYRPRVTGERKRKSVRGCIVGHDIAVLNLVVTKIGDEKVAGLTDDSAPRRLGPKRANNIRKLFNLTKDDDVRQYVIARTFTNKKGHTVRKAPRIQRLVTPLTLQRKRARKASKMKSILRNQEEAAAYSKLVTQRAAEQKDARRSLISKRRSTRKSA 238
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: A0A6A3NLQ1_9STRA (40S ribosomal protein S6 n=8 Tax=Sar TaxID=2698737 RepID=A0A6A3NLQ1_9STRA)

HSP 1 Score: 288 bits (737), Expect = 4.190e-92
Identity = 156/238 (65.55%), Postives = 180/238 (75.63%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASA 714
            +LNIA+P TG+Q  +E+DDE KLRA YDKRISQE+EG+ LGDEF G++FR+SGGNDKQGFPMKQGVLS  R RLLL KG +CYR RR+GERKRKSVRGCIV  DL+VLNLVV K GE D+PGLTD  +PRRLGPKRA+NIRKLFNL K+DDVRKYVI RKF+ K GK   K P IQRL+TP  L  KR  A  K   + K QR+A+EY              R S I+KRRSSRKAS+
Sbjct:   31 KLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIEGDVLGDEFKGFVFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKTCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFDSKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEIAKRRSSRKASS 268
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BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Match: M4B486_HYAAE (40S ribosomal protein S6 n=23 Tax=Oomycota TaxID=4762 RepID=M4B486_HYAAE)

HSP 1 Score: 285 bits (728), Expect = 3.600e-91
Identity = 154/238 (64.71%), Postives = 178/238 (74.79%), Query Frame = 1 
Query:    4 QLNIASPGTGSQMFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPMKQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVVTKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFEKK-GKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYAXXXXXXXXXXXXARRSMISKRRSSRKASA 714
            +LNIA+P TG+Q  +E+DDE KLRA YDKRISQE++G  LG+EF G++FR+SGGNDKQGFPMKQGVLS  R RLLL KG SCYR RR+GERKRKSVRGCIV  DL+VLNLVV K GE D+PGLTD  +PRRLGPKRA+NIRKLFNL K+DDVRKYVI RKFE K GK   K P IQRL+TP  L  KR  A  K   + K QR+A+EY              R S ++KRRSSRK S+
Sbjct:    2 KLNIANPLTGAQKVLEVDDEHKLRAFYDKRISQEIDGAVLGEEFKGFIFRVSGGNDKQGFPMKQGVLSNGRARLLLSKGKSCYRPRRKGERKRKSVRGCIVGPDLSVLNLVVVKAGEADVPGLTDVQIPRRLGPKRASNIRKLFNLTKEDDVRKYVIRRKFESKTGKKNDKAPKIQRLVTPRTLHHKRQIALKKVQQREKVQREAAEYNRLHAQRVKEQKDRRASEVAKRRSSRKVSS 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig11.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G827_ECTSI3.270e-14794.6140S ribosomal protein S6 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CDZ2_9STRA4.260e-11677.4140S ribosomal protein S6 n=1 Tax=Tribonema minus T... [more]
F0YLS6_AURAN3.670e-10271.9740S ribosomal protein S6 n=1 Tax=Aureococcus anoph... [more]
W7TEA2_9STRA3.910e-10168.7540S ribosomal protein S6 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2RIP4_9STRA5.540e-10170.1740S ribosomal protein S6 n=1 Tax=Rhizochromulina m... [more]
A0A7S0LPA9_9EUKA1.520e-10068.4940S ribosomal protein S6 n=1 Tax=Coccolithus braar... [more]
A0A7S3ZJK9_9STRA5.530e-9666.9440S ribosomal protein S6 n=1 Tax=Pelagomonas calce... [more]
A0A7S2WN65_9STRA2.390e-9264.1440S ribosomal protein S6 n=1 Tax=Eucampia antarcti... [more]
A0A6A3NLQ1_9STRA4.190e-9265.5540S ribosomal protein S6 n=8 Tax=Sar TaxID=2698737... [more]
M4B486_HYAAE3.600e-9164.7140S ribosomal protein S6 n=23 Tax=Oomycota TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig11contigEcto-sp6_S_contig11:586495..591795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score416.4
Seed ortholog evalue8.7e-114
Seed eggNOG ortholog2880.D7G827
Preferred nameRPS6
Model size1301
KEGG koko:K02991,ko:K07611,ko:K13022,ko:K14498,ko:K17284
KEGG Pathwayko01521,ko03010,ko03320,ko04016,ko04066,ko04075,ko04150,ko04151,ko04210,ko04214,ko04371,ko04714,ko04910,ko05205,map01521,map03010,map03320,map04016,map04066,map04075,map04150,map04151,map04210,map04214,map04371,map04714,map04910,map05205
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000028,GO:0000075,GO:0000082,GO:0000184,GO:0000278,GO:0000281,GO:0000462,GO:0000910,GO:0000956,GO:0001775,GO:0001776,GO:0001890,GO:0002181,GO:0002252,GO:0002260,GO:0002262,GO:0002263,GO:0002285,GO:0002286,GO:0002309,GO:0002366,GO:0002376,GO:0002520,GO:0002521,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0005938,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006924,GO:0006955,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007369,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022605,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030217,GO:0030218,GO:0030425,GO:0030490,GO:0030587,GO:0030684,GO:0030686,GO:0031929,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032943,GO:0032991,GO:0033036,GO:0033077,GO:0033365,GO:0033500,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0036477,GO:0042098,GO:0042110,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042592,GO:0042593,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045047,GO:0045184,GO:0045321,GO:0045471,GO:0045786,GO:0045930,GO:0046483,GO:0046649,GO:0046651,GO:0046677,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048598,GO:0048608,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0060548,GO:0061458,GO:0061515,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070227,GO:0070231,GO:0070661,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071236,GO:0071310,GO:0071361,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071887,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090702,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0099120,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901888,GO:1901889,GO:1903047,GO:1903347,GO:1990904,GO:2000810
Exons5
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2125@1,KOG1646@2759
Ec32 ortholog descriptionRibosomal protein S6e
Ec32 orthologEc-00_010570.1
EC2.7.11.1
Cds size690
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03011,ko04147,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig11.1229.1prot_Ecto-sp6_S_contig11.1229.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig11 586534..591223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348778.165784-UTR-Ecto-sp6_S_contig11:586494..5865331682348778.165784-UTR-Ecto-sp6_S_contig11:586494..586533Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 586495..586533 +
1682348778.2326217-UTR-Ecto-sp6_S_contig11:591223..5917951682348778.2326217-UTR-Ecto-sp6_S_contig11:591223..591795Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig11 591224..591795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348778.1841633-CDS-Ecto-sp6_S_contig11:586533..5865651682348778.1841633-CDS-Ecto-sp6_S_contig11:586533..586565Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 586534..586565 +
1682348778.194723-CDS-Ecto-sp6_S_contig11:587124..5871971682348778.194723-CDS-Ecto-sp6_S_contig11:587124..587197Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 587125..587197 +
1682348778.204266-CDS-Ecto-sp6_S_contig11:589444..5897471682348778.204266-CDS-Ecto-sp6_S_contig11:589444..589747Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 589445..589747 +
1682348778.213708-CDS-Ecto-sp6_S_contig11:590101..5902831682348778.213708-CDS-Ecto-sp6_S_contig11:590101..590283Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 590102..590283 +
1682348778.2232573-CDS-Ecto-sp6_S_contig11:591123..5912231682348778.2232573-CDS-Ecto-sp6_S_contig11:591123..591223Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig11 591124..591223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig11.1229.1

>prot_Ecto-sp6_S_contig11.1229.1 ID=prot_Ecto-sp6_S_contig11.1229.1|Name=mRNA_Ecto-sp6_S_contig11.1229.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=230bp
MFIEIDDEKKLRALYDKRISQEVEGEALGDEFAGYMFRISGGNDKQGFPM
KQGVLSANRVRLLLHKGVSCYRQRRRGERKRKSVRGCIVAADLAVLNLVV
TKKGEQDIPGLTDAPVPRRLGPKRANNIRKLFNLGKDDDVRKYVIARKFE
KKGKTVTKRPHIQRLITPIRLQRKRARAAAKKIAQAKSQRDASEYASLYA
QRQKEQKEARRSMISKRRSSRKASAKVVA*
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mRNA from alignment at Ecto-sp6_S_contig11:586495..591795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig11.1229.1 ID=mRNA_Ecto-sp6_S_contig11.1229.1|Name=mRNA_Ecto-sp6_S_contig11.1229.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5301bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:586495..591795+ (Ectocarpus species6 EcLAC_371)
CAACAGCTCAACATTGCTTCGCCCGGAACGGGCTCGCAGATGTTCATCGA
GATCGATGACGAGAAGAAGCTGTGAGTGGGTACTGCTGTGTTTTGTTTGT
GCTGTTCGACTATCGCGTGCTCCGTGTATACGTAGCAAGCCGGTGCTGCT
ATATAGGACACCAGGCACGACGCTTGCCTGTTTGTCTGGATGTGTTGGCA
TTGGTGCACTACTGGCTACGTTGGGGATTGTGGGGGGTCGGGGCGGGCTG
CTGTATGGAATAATCACAGTAACAGGAGTCACATCAGAAACAAAACTGCG
TGTTTGTGAAGGAGTCACCTGGTGCACTAACGCTGGAGATCGTGTGGCAT
TGCCCGTAACAACGGCGGTAGCTGCTGTGTTAACCAGGTACAGCCTCAGT
ACCAGGTCATGTAAGCTGCTGTAGGTCTTACGGCCCAAGCGATGTGGTTA
GGGATCAATCAGACACCGTCTACTTGGGCTACCAACCCACTGGAATTCTA
TCACCCATTCCGGACGATTCTGTTGTCCCATGAACAGGCTAATTACTCAC
TGCGGTTCACCCTCTCCGTACAACTGCTGTTGCTTGTTGCGTTGATGCCT
TTGTTTCTCGCTGTGCTTCCTTTCTCCCAGCCGTGCCTTGTACGACAAGC
GCATCTCTCAGGAGGTGGAGGGAGAGGCTCTTGGAGACGAGTTTGCTGGA
TACGTGAGTCCTTCCACAGCAGTTGTCAGCACGAGCAGTAGATGTCAATT
TTTCGTTGGTGTTGATACATGGTGGGCATGCATCATGCATCATCTGCATC
CTTCTTTCAATAGCGTACATAATAGTTGGAATCGATTTATACTTGCCGTC
ATCACAGCAGCGTCGGTTCACGTGCCACAAGTTCGTTTCACTGAAGTGGT
GCAAGAGGCCGCAACGACAGCAGCATGCACCCTTGTGCTGCTGCAAACGT
GCCTACTTCCCTTGACATTGTTCGGTGCGCAGCTCGGCAGTATAAGCTGT
ATGTCGATCCCGTTGCAATTTTGCGATCACAGCAGTCGTTGCAGCCCCAC
GGCGCCGCAGGCCCAGTAGTAGCGCGTTGTGCGTTATGGATGTCGCCCAT
TTCTCCCCCAGTGGCTCGCTTGTCCACCGCACTGCGGAATATCCTGGGTG
TACAAGACCGCTGATTCTGCGCCTCACCCGAAAAACAGGGCCTGTTTCTC
GTACCAGTCCCTATCGTGCGTGACGTAAGATATCACACACCCTGAATCGT
TTCACAAAGCTCGATTTCTCCGCAGCAAAAAGATTGGCGGCGTTGGAACT
ATCTCGTCGAGAAATATTCAAAAACTTCAAACTTGCCATTTGTTTTATAT
ACCATCGTCGTCTTGGATGATCGGGAGCGAGAGGCGGACGCGGAGCTCAG
TGCCGTAAACACGGAGAGTGACAGGATGGATGAGCAAATCAGACAGCTTA
CGCAGCGCGAGTGTATCGAGAAGGCCAAAGCCGCTGCCGCGTGTAGTGGT
ATCTGTGCTGCCGACGACGCCAGTATAATGGTATTTGACCCCTTCCTTCG
AAAAAAATCACCCGATCGTCTCCACGTTGGACAGCAGTAGGGCACACATG
TCTCGGCATAAAGTCCTAATCTAGCATGACGTCACATCCCAGCATCCGAC
GGTGCCAAAATAACCATGGTGTATCACGATCACATGTCTACCTCCAAATA
CCGCAACACGGCACACAAGTATCGCGGTAAAATCGTGGAAGGTGCCATCA
TGCACCCTGACAAGTCATAACTTCGTTGGAACGCACAACGGTCGTCTACG
GCACTGGTACAGACGTTTGCACTCAGACTGCAGTTTTTTTGCCAAGCAAC
GCCCATATAGATAGCTATACTGAAGCGCTTTAGATGGAAACGCGGTCAGT
CGTGATCTTGCCACCGTACCAACCACTTCAGCCACTGGTTTGTGACCGAG
CCAGCGGGAATGGAAGTCTGGTGGTTTGTTGTCGTTCGGGGGCTGCACAC
TCGCTGCGCTGGCGCACGCGCAGTTCGTTTTGGGTGACGGGCAACACGTC
AAAAGGCTTTCACCGGCCAGGCGGTTGGCTTGATCATGGGGTCTGGGTGG
GTGAAGCAGATGTGCTACGAGTCATGTGCTTAGCGACGGTGCGGAGGGCT
GCCAATGCTTTGGAAGATACTCCGTAGTTGCGAGATACTTTTAATCCTTG
TCAAAGACGATCGTACCCGGTGGAAAGGGTAAGGAATACCCTGTACGAGT
ATCTTTGCCAATGAACACAACGTCTCGCACAGACTGAGTATCCTGGAAAG
CATTGGCAGCCCTTCGCACTGTTGCTGAAGGGCACGATCTGTGAGATATT
TGCTTAAACCACGCAGACCCCATTATCCAGCCCCCTCCTTGCCGGTGAAG
GCTACGCCCGGCTCCAGTGGAGGGGACGCCGCCCCCCCTGTGTCCCGGGG
CTTAGCGATGTTTTTTGTTTTGCTCTCGGTGTTAATTTTTTTTCCTTCAC
AGGTCAAAATTAAAGATACAGTCCGTTTGTTTTGTTGGCAGAGGAAGGAA
TCGAGAGTGACGGTGATGTGTGTCAACGAGACGTTACAAAGTTAAAGTTG
TGCTGGCTCTCCGTTCTCCGTGAAAGCCTTCCAACACAACACACATGTGT
GCCTTTCGGTGGGTCTTGATTGCTATTATTGCAACAAACCACGACGGGCC
TGTCGTACAGGGTTGGGGGGGATATGGCAACGCTTCCTAACCGACTTGGG
AGGCAGTTTCATTTGCACATACATATGACGACGTTCGAAGCCACGTCGTA
TTTGTGGTACTGCCGTGGAACTAGGTAGTCTCATTCACTTTGAGGCCACA
ACAGCAACTCGAGGGTGAAGCCGAAAGCGCGCCAACAATCCTAACATAAC
AAGCCGAATGGAAACCCGTTACCCGCTCCTGTCTATCCTCCCACCCACAG
ATGTTCCGCATCTCCGGTGGCAACGACAAGCAGGGCTTCCCCATGAAGCA
GGGGGTGCTCTCCGCCAACCGCGTGCGCCTGCTGCTGCACAAGGGCGTGT
CCTGCTACCGCCAGCGCCGCCGCGGCGAGCGCAAGAGGAAGTCGGTGCGC
GGCTGCATCGTGGCCGCCGACCTTGCCGTGCTTAACCTCGTGGTGACCAA
GAAAGGGGAACAGGACATCCCCGGGCTCACCGACGCCCCCGTGCCCCGCC
GCCTCGGCCCCAAGCGCGCGAACAACATCCGCAAGCTGTTCAACCTCGGC
AAGGTGAGGAAGGGAGAAGAAGCACACCAGGCTGTCGGGAGTGGGCTTGG
GAGAGTTGGGTGGCGGCGTGTGCATTTTGTTGGCCACGAATGGTTGCCGA
TAGCACTGTTGAATGTTGGAACCCGCTTTTGTGTCGGTGTCTCTCTTGTG
CTTGTCGTCGCAACGAGGGACGCTTTAAACCGCGTCCTGTGTCCGATGGT
GTTTTGGTCGTTTGTTGCATTTGCACAGCAGTGATTGGCGCGTTGGCTTG
CCGGTACACGAACGATACACTGTGATTGGCCAAGAAATACTCCGTTGCTT
GACACCCCCTCCTGACGGCTGGTTTTCCCGATGCAATTGCGGTCTGCTTT
TTGTCAGGACGACGATGTGCGCAAGTATGTGATTGCCCGCAAGTTCGAGA
AGAAGGGCAAGACCGTCACCAAGCGCCCCCACATCCAGCGCCTCATCACC
CCCATCCGCCTCCAGCGCAAGCGCGCGCGCGCCGCGGCTAAGAAGATCGC
CCAGGCCAAGAGCCAACGCGATGCGTCGGAGTACGCCAGGTGCGTCGTCC
TGCGGTTTTGCCCTGTCGCAGTCGTTTTGGGGGGTTGGGTTCGTCTAAAT
CACGTCTCTGCGAAACTGAAACGGCAGCGGGTTATGCTTTATCAACTAGA
GCAGGAAAAACACGTGGGTTCAAGTTCTGACAGTTGATGAATCGGACTTG
TTTTGCTTTCTCCCACCATGCCGGAGGAAGTCTGTTTCTCGGCACAGGTC
GTCGCCCCGTTGACTGCCCCGCACTAGTGCTGTTCTGTGTTGCTCAAACG
TGCTCTATCTGGTACCGTGGGATGCACTTTCGGCTGCACATGCGAATCGT
CATTCTCTTCCTCTCTTCTTGTCATGTCCGATCCAGTCGACTGAATTTAG
TATATCCACATACGTTCGTGCCGTGTCTTGTTTAAACTGCGAGTGCGGGT
GTTGCTGCGCCCGTATGCCAACCCCCTTTCTCAGTAGTTTTTATTACGAG
CGCGTGCGAGGTTCCAGTAGTGCCCCGCGGGTTCACGGCACGCTCGCCGT
GTACAGTGTAGAGCCGTACCCCGTCCGCGTCCAAGAATGTGTCTTGCGTT
GCCTTGTGTCCTCTGGCTTTCCTAGTTACACGATAAGGCGATCTCCCTTC
GCGTCCATCCCCTCACGCAACCTAACCAAGATGGCAAGTCGTTTGTATGT
TTACGGGGGAGTCAGAAGGGACGGGTGACCAACCGGCATGTGTAAAGTTC
GCACAGATTTTTGTACGGGGTACAAGAACGGGCCTGAAGACTATTCATAC
CAGGTACATAGTTCACCGTCTCAGGAGTTTTTCCCTTGCCCCTCCATCCT
GCCCCCAAATTCTCGTGTTCGTTGCGCAGCCTTTACGCCCAGCGCCAGAA
GGAGCAGAAGGAGGCCCGCCGCTCCATGATCTCCAAGAGGCGCAGCTCTC
GCAAGGCTTCCGCCAAGGTTGTGGCTTAAACAACATGGTTGCAGTCGATG
GCATGCATTGCCGTGCCACGCGGCATGAATCCGTGATTTTGTTGCGGATT
AAATGCAACCGGGGGAAGACCGTATCTCAGCTTTGACCCGTCGGTAGAGC
TCGTTTTGAGCTGCTGCCACAGGAGTAGGACCCCTGGCGGGTTTAGGCTT
CGTTGGTTACGGGTCTTTTAACTGCTTGCTCTGCTCGCCGCTCCCGCGGT
GGCGTTGGCATTGTACGCGTAATGAACGGGGGACATGAACTTCAACTCTT
CTTGCTTGGGACCTTTTTGTGTCATGCGGGCACCACCGACAGCGAGTGTC
GCGCGTTTCCGCACCACGTCTGTCTATCTCGGTGAATAGGCTCTCACCCG
CAGATGACGTCTTGTGCTTGAGCCGACGGCGAGAATATTTTTTTACCTTG
GCGCGGGACCTCGCGATGGTCGACAGAGTTGTCATGCATCGAACATGTTG
AGTGGTTTCCCCTTCCAATGCATTACTGGCTCTTTTTACACAAAGATCTC
GCACGCACGCGCCAGTGTGACCCACCCCAAAAGATGATCGCCAAGTAGTG
C
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig11:586495..591795+

>mRNA_Ecto-sp6_S_contig11.1229.1 ID=mRNA_Ecto-sp6_S_contig11.1229.1|Name=mRNA_Ecto-sp6_S_contig11.1229.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp6_S_contig11:586495..591795+ (Ectocarpus species6 EcLAC_371)
ATGTTCATCGAGATCGATGACGAGAAGAAGCTCCGTGCCTTGTACGACAA
GCGCATCTCTCAGGAGGTGGAGGGAGAGGCTCTTGGAGACGAGTTTGCTG
GATACATGTTCCGCATCTCCGGTGGCAACGACAAGCAGGGCTTCCCCATG
AAGCAGGGGGTGCTCTCCGCCAACCGCGTGCGCCTGCTGCTGCACAAGGG
CGTGTCCTGCTACCGCCAGCGCCGCCGCGGCGAGCGCAAGAGGAAGTCGG
TGCGCGGCTGCATCGTGGCCGCCGACCTTGCCGTGCTTAACCTCGTGGTG
ACCAAGAAAGGGGAACAGGACATCCCCGGGCTCACCGACGCCCCCGTGCC
CCGCCGCCTCGGCCCCAAGCGCGCGAACAACATCCGCAAGCTGTTCAACC
TCGGCAAGGACGACGATGTGCGCAAGTATGTGATTGCCCGCAAGTTCGAG
AAGAAGGGCAAGACCGTCACCAAGCGCCCCCACATCCAGCGCCTCATCAC
CCCCATCCGCCTCCAGCGCAAGCGCGCGCGCGCCGCGGCTAAGAAGATCG
CCCAGGCCAAGAGCCAACGCGATGCGTCGGAGTACGCCAGCCTTTACGCC
CAGCGCCAGAAGGAGCAGAAGGAGGCCCGCCGCTCCATGATCTCCAAGAG
GCGCAGCTCTCGCAAGGCTTCCGCCAAGGTTGTGGCTTAA
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