mRNA_Ecto-sp6_S_contig106.1033.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig106.1033.1
Unique NamemRNA_Ecto-sp6_S_contig106.1033.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.320e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   94 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRR 234
            SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRR
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRR 55
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: A0A7S4A937_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A937_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.330e-10
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:    7 DIWQAARANNVPRVKALL-ERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK--RRQVAEVLLRAGARWT--------ILTKRLQTPYDLAVARGLKIQALRIQ 354
            D + A R  N+P +K L+ E+  S   TRWSG+T LHRAA+V   ++ + L+   A  + +T  G   PLH A+     + A  LL  GA W          +  R +TP   AV +G ++ A R++
Sbjct:    4 DGFLAVRNGNLPLLKHLIAEKKTSLTHTRWSGMTLLHRAADVAQVEIIKYLMELGADASAKTFRGGDTPLHLAVSAGHEKAAMALLEGGAPWVPSKQKPKMAVNNRGETPMRTAVRKGYQLMAQRLE 130
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: A0A3B4AQ06_9GOBI (Protein phosphatase 1, regulatory subunit 16A n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4AQ06_9GOBI)

HSP 1 Score: 60.5 bits (145), Expect = 1.650e-7
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   10 IWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK--RRQVAEVLLRAGARWTILTKRLQTPYDL 312
            +  AA  N+VP V+ LL +GVSPD     G+T LH+    +  +V Q L++A A VN   S  W  PLH A       + ++L++AGA    +      PYDL
Sbjct:   71 LLDAAARNDVPEVRELLNKGVSPDLFNEDGLTALHQCCIDDFVEVVQCLLDAGACVNACDSELW-TPLHAAATCGHTGLVQILIQAGADLLAVNADGNMPYDL 172
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: A0A2D4C951_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C951_PYTIN)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-5
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    7 DIWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRRQ 237
            ++ +A R N++PRV+A+L RGV+PD+    G T LH  A+     +A+ L+   A  NV    G + PLH+A++ R+
Sbjct:  211 ELREATRNNDLPRVRAILSRGVAPDSRGSDGATALHIXAQQAMGGIARELLEHHADANVADRLG-FTPLHWAVQLRR 286
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: UPI0006234918 (ankyrin repeat domain-containing protein 39 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006234918)

HSP 1 Score: 53.9 bits (128), Expect = 1.490e-5
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   10 IWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRT 189
            IW AA   +V R+K LL +G+SPDAT  +G  PLH AA      V ++L+   A VN  T
Sbjct:   37 IWGAAMDGDVERIKLLLSKGISPDATDSAGYKPLHYAARNGHYLVCEILLQHGADVNATT 96
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: A0A2C5Y7U7_9HYPO (Uncharacterized protein n=1 Tax=Ophiocordyceps australis TaxID=1399860 RepID=A0A2C5Y7U7_9HYPO)

HSP 1 Score: 53.9 bits (128), Expect = 1.670e-5
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:   31 NNVPRVKALLERGVSPDATR---WSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRRQ--VAEVLLRAGARWTILTKRLQTPYDLA 315
            NN+P  + LL     P +TR     G  P+HRAA   S  +  +L++  + +N   + G Y PLH A+      VA +LL+AGA +TI T+  +   DLA
Sbjct:  119 NNLPAARILLSEAKPPASTRVRDGRGQYPIHRAAAAGSLPILNLLVDKRSPLNSTDNEG-YTPLHHAIAEGHGDVAILLLKAGADFTIKTQNDELALDLA 217
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: UPI00201F1AE7 (ankyrin-3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F1AE7)

HSP 1 Score: 54.3 bits (129), Expect = 1.950e-5
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:   31 NNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALKRR----QVAEVLLRAGA--RWT 276
            +N   ++ L +RG+ P++  W G T LH A+   S      LI A ASVN+RT+ G  +PL+ ALKR        E LL AGA   WT
Sbjct:  176 DNSRAIQYLKQRGIDPNSKNWFGETALHVASGEGSIHNVHALIEAGASVNIRTTRG-ISPLYRALKRDGEVLDHVETLLEAGAVSLWT 262
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: A0A2R7WST1_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WST1_ONCFA)

HSP 1 Score: 53.1 bits (126), Expect = 5.090e-5
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   10 IWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFA 222
            + +AA  N++P V+ LL +GVSPD+T   G+T LH+    ++ ++ ++L+   A+VN   S  W  PLH A
Sbjct:   68 LLEAASRNDIPEVRKLLMKGVSPDSTNEDGLTALHQCCIDDNEEMMKLLLEFGANVNAEDSEKW-TPLHAA 137
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BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Match: UPI0014436981 (ankyrin repeat domain-containing protein 39 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014436981)

HSP 1 Score: 51.2 bits (121), Expect = 9.820e-5
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   10 IWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWG 198
            IW AA+ N + RVKAL+ +GVS +    +G T LH AA     +V ++L+   A+VN +T  G
Sbjct:   35 IWYAAQYNELDRVKALMNKGVSANVVDSAGYTALHYAARNGHYEVCKMLLENGAAVNAQTPCG 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig106.1033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4B2_ECTSI1.320e-24100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A937_9STRA2.330e-1033.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3B4AQ06_9GOBI1.650e-736.89Protein phosphatase 1, regulatory subunit 16A n=3 ... [more]
A0A2D4C951_PYTIN1.020e-537.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI00062349181.490e-545.00ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A2C5Y7U7_9HYPO1.670e-536.00Uncharacterized protein n=1 Tax=Ophiocordyceps aus... [more]
UPI00201F1AE71.950e-540.91ankyrin-3-like n=1 Tax=Haliotis rufescens TaxID=64... [more]
A0A2R7WST1_ONCFA5.090e-538.03Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
UPI00144369819.820e-541.27ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig106contigEcto-sp6_S_contig106:120491..122607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.1
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog4787.PITG_17027T0
Model size534
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Ankyrin repeat
EggNOG OGs3QFJX@4776,COG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
Cds size534
COG Functional cat.M
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348755.2458405-CDS-Ecto-sp6_S_contig106:120490..1206671682348755.2458405-CDS-Ecto-sp6_S_contig106:120490..120667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 120491..120667 -
1682348755.2579103-CDS-Ecto-sp6_S_contig106:120847..1209701682348755.2579103-CDS-Ecto-sp6_S_contig106:120847..120970Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 120848..120970 -
1682348755.2716403-CDS-Ecto-sp6_S_contig106:121544..1216851682348755.2716403-CDS-Ecto-sp6_S_contig106:121544..121685Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 121545..121685 -
1682348755.278709-CDS-Ecto-sp6_S_contig106:122514..1226071682348755.278709-CDS-Ecto-sp6_S_contig106:122514..122607Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig106 122515..122607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig106.1033.1prot_Ecto-sp6_S_contig106.1033.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig106 120491..122607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig106.1033.1

>prot_Ecto-sp6_S_contig106.1033.1 ID=prot_Ecto-sp6_S_contig106.1033.1|Name=mRNA_Ecto-sp6_S_contig106.1033.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=178bp
MGDIWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQ
VLINADASVNVRTSWGWYAPLHFALKRRQVAEVLLRAGARWTILTKRLQT
PYDLAVARGLKIQALRIQDISRKISEERRILHKSAPTDASTSRGRRATEA
TAARRKQAKDHQVNMQRLQVTPEGKDE*
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mRNA from alignment at Ecto-sp6_S_contig106:120491..122607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig106.1033.1 ID=mRNA_Ecto-sp6_S_contig106.1033.1|Name=mRNA_Ecto-sp6_S_contig106.1033.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2117bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:120491..122607- (Ectocarpus species6 EcLAC_371)
ATGGGAGACATCTGGCAGGCAGCGCGCGCGAACAACGTGCCGAGGGTGAA
AGCTTTATTGGAGAGGGGGGTCAGTCCTGATGCCACGCGCTGGGTGAGAG
TAAACTTCTGAGCTTTTTCCCTCGGCAGAACGCGTGCCTACCGTACTGTA
ATTTATTGCAACTATACGTCGTCTTATTTTCATGGGGGTCACTTCGTTCA
TGTGTACAGTCTACAGTGTACCAATAGCAACCATACCTCCAGAGCACGAT
TTTTAGGAAATACCTAGTCCATAGTCTGCACACAGCCACAGAAAGACTCG
TTCGGAGATAGTACCGCAGCAATCGAAGGGAAGGTGTTGAAGTCCTGTCA
ACAATGGTCCACGCGACTTCGTCGCCTATAGGTCATGCACGCCCTCTGTG
AATCCAAAACGAATCCTACTGGCAGGTTACTACGTACCAAAGTTATTTGT
CGACAGGGAGTCTATGGGTTCTACATTCACATGCATAAGGACGTGGTCGT
CACCGGCGGGGGAGTTCTTTGGCCATCGATACTTGTAGGCCCGTGCGCAA
TTTGTCATTCTCTCTCCTCCGGGTGCGATAAATAACTGTAAAATAAGCAC
AGGGAATCGATCTCCCCCAATCAATCCCTTGCTGTCGCCGTGTTGCTGCA
AAACCGTTCCTTTTATGTTTTCAGGAAGTCAACCGTGTGAATATAGCGTC
GTCGTACTTACATGTAGATGATACCTTGGCGAGTCTCCCTTGCCCGAAGG
GAGTGTGTGTGTGTGTTCCTGTGCGAGAACGGTTGGCGGTGCTTACACAT
CTACACGGAATAGTAACACGTCAGTCTGCACACAGCGCGCCTTCTCCAAA
CTATTGACGGTCTTGCAAACACGGGTCCTCTATTTGCTCTGTGGCTCTTT
GGGGGGTTGGAGGGCGCTTCAGAGTGGAGTTACACCTCTTCACCGAGCGG
CCGAGGTCAACAGCTGCCAGGTGGCTCAGGTTCTTATCAATGCGGACGCC
AGCGTGAACGTGAGGACATCATGGGGCTGGTATGCCCCCCTGCACTTCGC
CCTTAAAAGGCGAGTGAAAAAGGACATGCGCTCCATTAGACCGCACCCAC
GCGTGGAATTCTAAGTACTCTGTTAAATTCTAACCATGTTGCAAATGATA
TAGGATTTTGAACGGTGGTCGGCGGTGTTGGCAATGCCGGTCTACTTCTG
TTTCCTTCCACACGTAGTACGCCACGGTGCTCAACGCCACACACGTTTTC
GGTTTGAAGAGCTGAAGCGGGTCACGGAACTGGGGAGAGGTGTTCGCTTT
CTTAGCAGGGCCCACGTCATGTTTAGACGTTGTTCAAGGTTGTGTGGCGT
TCACGTCGCACGTATCAAGGCCGTACTAACCAAACCTTCAAAGTACCATA
TATAGCCACAGGTCAATCGACGCGCTATTCGCAGTACCCCGACCATGCAG
ATGCCGTTCAGTCGTGCCGCAGGCTGAAACCAATCTGCCCATTGTGGTAA
TATCGAAAGACCCTGTACTCGTGTACGAACGTGCTGATGTTTAGTGAAAT
GAAGACGTCAGGTTTATCGTGCTAAGCGAAATGTGTCCTCATTCAGTATC
GTCTGGTTAAAATGCTTTTTCGAACAGCGGGCACGAGCAAGTTGCCGAGG
TGCTTCTGCGAGCTGGAGCGAGGTGGACGATTCTTACCAAACGACTGCAG
ACGCCGTACGACCTGGCGGTCGCCCGCGGGTTGAAGATCCAGGCGCTGAG
AATACAGGATGTGAGATACAACGAGCTCCGAGAACGATATCCTACCCAGC
GGTAATCGGAGGGTTCATCAACAACATTTACATAGCTAGACTATGTACAC
TTGAATCATTCACGTCGCACTGGTACGCCATGTGCACTGGCACGCCATGT
ACTAACCATCTGAAAATGACCGGACGATGACAACAAGCAGATCTCACGTA
AGATTTCGGAAGAGAGGCGCATCTTGCACAAGTCGGCCCCGACAGATGCC
AGCACCAGCAGGGGCAGGAGAGCAACCGAAGCGACGGCGGCTAGGCGCAA
ACAGGCAAAGGATCATCAAGTGAACATGCAGCGGCTGCAAGTGACTCCGG
AGGGCAAAGACGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig106:120491..122607-

>mRNA_Ecto-sp6_S_contig106.1033.1 ID=mRNA_Ecto-sp6_S_contig106.1033.1|Name=mRNA_Ecto-sp6_S_contig106.1033.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp6_S_contig106:120491..122607- (Ectocarpus species6 EcLAC_371)
ATGGGAGACATCTGGCAGGCAGCGCGCGCGAACAACGTGCCGAGGGTGAA
AGCTTTATTGGAGAGGGGGGTCAGTCCTGATGCCACGCGCTGGAGTGGAG
TTACACCTCTTCACCGAGCGGCCGAGGTCAACAGCTGCCAGGTGGCTCAG
GTTCTTATCAATGCGGACGCCAGCGTGAACGTGAGGACATCATGGGGCTG
GTATGCCCCCCTGCACTTCGCCCTTAAAAGGCGACAAGTTGCCGAGGTGC
TTCTGCGAGCTGGAGCGAGGTGGACGATTCTTACCAAACGACTGCAGACG
CCGTACGACCTGGCGGTCGCCCGCGGGTTGAAGATCCAGGCGCTGAGAAT
ACAGGATATCTCACGTAAGATTTCGGAAGAGAGGCGCATCTTGCACAAGT
CGGCCCCGACAGATGCCAGCACCAGCAGGGGCAGGAGAGCAACCGAAGCG
ACGGCGGCTAGGCGCAAACAGGCAAAGGATCATCAAGTGAACATGCAGCG
GCTGCAAGTGACTCCGGAGGGCAAAGACGAATAG
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