mRNA_Ecto-sp6_S_contig105.1021.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig105.1021.1
Unique NamemRNA_Ecto-sp6_S_contig105.1021.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig105.1021.1 vs. uniprot
Match: D7G3F7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.960e-18
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MWHGVSSIPIWSCPGRARSKLFPEGASGTSCASASL 108
            MWHGVSSIPIWSCPGRARSKLFPEGA GTSCASASL
Sbjct:    1 MWHGVSSIPIWSCPGRARSKLFPEGAYGTSCASASL 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig105.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3F7_ECTSI2.960e-1897.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig105contigEcto-sp6_S_contig105:573237..577697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_004390.1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348754.054079-CDS-Ecto-sp6_S_contig105:573236..5733091682348754.054079-CDS-Ecto-sp6_S_contig105:573236..573309Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 573237..573309 +
1682348754.061838-CDS-Ecto-sp6_S_contig105:577659..5776971682348754.061838-CDS-Ecto-sp6_S_contig105:577659..577697Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig105 577660..577697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig105.1021.1prot_Ecto-sp6_S_contig105.1021.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig105 573237..577697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig105.1021.1

>prot_Ecto-sp6_S_contig105.1021.1 ID=prot_Ecto-sp6_S_contig105.1021.1|Name=mRNA_Ecto-sp6_S_contig105.1021.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=37bp
MWHGVSSIPIWSCPGRARSKLFPEGASGTSCASASL*
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mRNA from alignment at Ecto-sp6_S_contig105:573237..577697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig105.1021.1 ID=mRNA_Ecto-sp6_S_contig105.1021.1|Name=mRNA_Ecto-sp6_S_contig105.1021.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4461bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:573237..577697+ (Ectocarpus species6 EcLAC_371)
ATGTGGCATGGAGTATCGAGTATCCCCATTTGGTCCTGCCCAGGGCGTGC
GCGTTCCAAGCTGTTCCCAGAAGGTAAAACAAAAAGTGGGTGGGTGCCTT
ACCATCGTACAACTTACTCTCATCTCCATTATTTTTTAGCCAGACCGAGA
ACGCAAAATCGCGATTAATCGTCTGCAGCGACTTGTTGCGTTTGAATATT
GATGTAGATATGTGGGTACTGTGTTATTCGTGTGGTCTGCTGTACCCTTG
TTCGTCTACCACCAGTGCCCGCTGCCCCTCTCAGGTACTTCGAAGTACTA
AAAACCCTTCGAGGTACGTATTGTGTCAGGTCCCTCACGTGGTTCCCTAC
TTCATGTAATATGTACCAGTACTGTAAGATTTGGTCACTTTTCATGCTTT
GGCGTTTCTTTCTCTCGCGGCAGCGAGTCTTTTCTCGCGGTTCCTTCTCA
GGGGCATGCAGGAGGCTCGTCGGTACATTAGCGCCCGTGCCCGGAGCTCG
GTAGGCCTCCGTGGCGCGTGTGGTTGACGGCCAAAGCTGCGAAAACTGGC
TCAAAACCCCGGGGACGCGTTTCGCGCTGACAAAGCCTGGCGAACCAATT
CTGAAGCCTATCAGGCTGAGTCTTACGGCGTGATTATTTCCGGATTGGAT
TTGAGGGGGGGGGTCCTTTTCTGAGCCAAAAAAATAATTTGGGCGTCTCA
CGGGTAGGAAAATGGCAATTTCCAACAGCCCAAAATCCAACAGGGCAGTT
TCCAACAGCGATTCCGGCCGGCCAGTTGGAAAATTGGCACATTTTCTAAC
AGTGATCCTGTTGGAATATCGCTGTTAGGAATGGGGGGGGGTACCCCCTG
GTCACACCCCGATCGTGCCAGAACGAGGAACTACACCGTCTCCTGGCCAA
ACAGAGGCCAGTATCATGAGGTCATGCACAAACCCTCTGCAGGTGTCTAA
AATTCAGGGGGTTCTGCGTCGTGTTGGCCGCACACGAGCCGACAACGTCA
ACCCTGCCACTTTGCTCTGCTGACGTTCTTGCCAGTGGGCCGAAAAGAGC
CGTTTGTGCGCCTGCTGCATGTGTGACCAGTTCAAAACACATGCCAGAGA
GAGACCTTAAGCCATCGACATCCACAAACTGCAGCTAATGGCGTGTGTTC
ATACTCATACCCTCTGCTCGCGTACCAGAAACAGAGCGTGTTGTCCAGTT
TTGATTGCATATGGCCTGCAAACGTGAACCAAAGTGTGTTGCGGTGTTGG
CTTTTTGGTATTTTTTCTTGTTCCGCCGCGTGTTTCCTCCGTGTGTCACC
CGCGACCAGTCAAAAACGCATGCTAGAGAGAGGCCTTTGGCCGACGACAT
CCACAAAAAGCAGCCAGAGGCGTGTGGTCATACACGTACCCTCTGCTCGT
GTCCCAGAAACAGAGTGTATTGTCCAGTTTTGATTACACACGGCCCGCAA
ACGTGAATCGAGGTGTGGTTCGGCGTTGCCTCTTTTGGACGTTGCTTTTT
TTTTCTACCGCTTGCTCCGAGTCGAGTGTGATCAGTGTACAGCACATGCC
ATCAGAGAGAGGCCTTTGGCCGACGACATCCACAACCTGCAGCCACTGGC
GTGTGATGATACACATGCCCTCTGCAGGCGACCCATAAACATGGCGCTCG
GTGTCTTGTTGGTCACACACGAGCCAAAACCGTGTACTGAAGCATGTTGC
GACTCACAAGAACATGAATGAATCAGCTTCTTTTTTCCCTTCAGAAAAAA
ATATACCTCGAGGAACCGTAAGACGGTCGTTTGGATCTTGATATTTTTTT
CCGTGCAGGCCACCCCCCTCCGACCGAGAGAAAAAAAAATCTCCGAAATA
ATCACGCCGTAAGACTCAGCCTCAAACCCATCAAATACGACGGTTTGAAA
TTTTTGCCTCTTGCTCCTCCACTTTCATTCGTTCATTCATTTATTCATTC
CATGATTCATGGCTGCTTCGTGTCGTCGCATTGTCCAACAGCAGAACCTA
CGTTTACTATGCACTTCGCAGCGGGCCAAGTGTAGATAAGTCTGAGAGCA
TATGCATCCAGCCGCAGTGTTGAACATGTCCCATTTGTGGTGTTGTTTCG
GCTTGAAATTCGGTTCTCATCGAAAATCTGCCATCGTCAATCAAAGATAC
CATGGAAGTCTGAGTTTTCGCTGCCAAAATATTGGTCCGCTCGAGCTGGC
TCCAATGTAGAATAACAACGTGCGCGATGTTTTGTGCCGAAAAACAAGCG
TTGTAAGACACACAGTCCCTCTTCGGGCAATGCGCATGTGGTCTTGCGTC
ACCTGAGGGAGGGTAGACACCCACGTCCCGAAGGGCCGAAGAGAGACCTT
GTACCCTTTACATAGTACAAGTGTCATGAAAGTGTGTCGGGACTTTACTG
TGAGCGGGTCTTGGCCCCTCCCCGAGCGCTTCTTCACCAGGCGATGGTTC
TAGGAGTCTTCCGACCGCCGGCATCCCTGGCTGTTGCCTCCTCTGTTCTT
CTCGTTGGTGGCTGTGGCCTATCGACGACGACGATCTCTTCACCACGAAA
AGAACAGGGGGCCCGTCGGATGATGCGTCCGCGGGGGACATTTCGTTGTG
GATAGAATCGCCGGCCGCACGTGCCGTGCTGAAGCTCGTCCCCAGAGCTG
TCGTCGTCGCCGTCGGACGTAAGTATTTACCAGTAAGTTGCAGCCTGACA
TCTTCCCACCAGATGCGTGTTGAGTCGTCGAGTACAAGTTGCAGCGCTGC
GGCCCGGATCGACGAGTGCGGTAGCGGGTCCTGTGATGGTGCTACGGAAT
GAGCCCGAAATTAAGCAAAATCAAGCTCGGGTCGAGGGCCACTCTCTTAT
ATTAGCCCCGAAGAAGCAACTGATTTTTTCAATTTCTTGAGATTATTTTC
GTATGGCTCGGTGCTTTTCCGTAAGAACGCACAACACCACAACATTTACG
CGGTTGTATTCCAACCCGAACAGTCGACGTGCAAACGTTGGAGGTTCTCA
CCCTCTCCATCCTTCTCACTCCCGCCTCTTGGTCCCACCTCTATCAACGC
CCAAACGGCGGTGACCCACCCGTGCTACAAGACGTCAACAGCAACATCAG
TCTCGTACGCCCATCAGATGGTAGCATGACGCGGTAGTTGTACCCCACTC
CTGAAGGTGCTCTACGAGCGACGAACCAACCCAGTTCATGTTCCACGAAC
ACCCCATGATTTATGACGAGAGGGAGTTACCAAGGGCCGCCGGTCGAGAC
GTCTGGAGCCGGAGCCCGTTCGAGATGTCCGCATCCTTTGCATTTCGTTT
TCGGGTGATAACTCATCATCGTCGTCGAGCTGAGCCCACGGATCCTGACG
GCCTGTCATTGCCTCCGCCTTACCGTGGCCAAGAGATGGCAAGAGGAATC
GCTACTTCCGGTCAGGCGGAATCGATGACCAATATTCGAGCACTCGCTGC
TGTTCCCACAGGCGTAGTATCCTTCCGTACAGGAAAAGTTATTTGTTAAG
CCGAAAAGTGACCGCCAACGTATAGAAAGTTCAACCTGACGCATCGCAGC
TCTTGTCACCGTTCAAAGCGCAAACGCTCGACTGCTGGTCCACCTCATCA
TCACCTCCTGCTATTCCGGCAGGGCTGCTGTCACCGCCCTTGCCCAGCTC
ATCAGAGCTGTCATCATCCGCGTCGTCCCATGAAGGTGACGGCCCGGAAA
GGCTTTCGAGGTTGAAATGCGGGCACCTCCAGAGTCATCAGCTTCATGAC
CTTCCCGGTTTTGTCCAAGAGACAGAATCTATAGTCCTGATCAGCTTTAA
TGTCAGTGACCGCCGCAAGAACCCAAAGGGTAAGCCTGACATACACTGTA
AGGGCTAGATTACCTCCATTGTGGAGCCATACGTCGAGTTGCTCCTCCAC
ACAATGCGTCAGCGCCGTCCATATTTAGCCTGCGTCAATCAGATGGTCCT
CATCGGGGCAGCCTGCATGTAAACACACCAAAGAAGCATTTGGCACTCCT
TATGGAGATCACAGCGAGGAGAATCGGCTGCACCTCGGGCATGGTGCTAA
CATGTTGTTATTGTTGTTTTTGGGTGGATTCACGTGGCCACAGGCAAACT
TTCACTAAACAAGGCATACTCAGATGTAACAGACCCAAAGGATTCCCAAG
CCAATATAAGTCAAAGACAGAAAGCCTAGAGCCCTTCGCTCGCCTCTACA
CACTACGTGAGGTAAACACACCATGCGCGGGAGATACTGTACAGCACGTA
AGTCATGCAGAAATTTTCCTGCCTGCTGAGACCTTCGGCTAGAAGATACC
ATCAACAGAAACGCCCACTTATCGCATACCACGAGCCCCTGGAAATCGTC
GCCGGATCCTCCTTTCGAGATGGTTCTTATTGGTTCCATGGAATCGCCTT
CCATGTACCCGGGGCTCTTGCAGGAGCTTCCGGAACTTCTTGTGCAAGCG
CTTCTCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig105:573237..577697+

>mRNA_Ecto-sp6_S_contig105.1021.1 ID=mRNA_Ecto-sp6_S_contig105.1021.1|Name=mRNA_Ecto-sp6_S_contig105.1021.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp6_S_contig105:573237..577697+ (Ectocarpus species6 EcLAC_371)
ATGTGGCATGGAGTATCGAGTATCCCCATTTGGTCCTGCCCAGGGCGTGC
GCGTTCCAAGCTGTTCCCAGAAGGAGCTTCCGGAACTTCTTGTGCAAGCG
CTTCTCTTTAG
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