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Homology
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 4.340e-136 Identity = 237/252 (94.05%), Postives = 243/252 (96.43%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGRAPRSARGRSASTSVVDDEMEVVEDYGDGGGSGRKVFPAGGRGRKGRTXXXXXXXXXGVAPQESTATRRGPHKRKSPASSAYPRSASSHQLVQLKVCYC 756
MDQDG+FLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDE++IFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGRAPRSARGRSASTSVVDDEMEVVEDYGDGGG+GRKVFPAGGRGR+G XXXXXXX PQESTATRRGPHKRKSPASSAYPRSASSHQL+QLKVCYC
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PGRAPRSARGRSASTSVVDDEMEVVEDYGDGGGTGRKVFPAGGRGRRGHAXXXXXXX---XXPQESTATRRGPHKRKSPASSAYPRSASSHQLMQLKVCYC 247
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 202 bits (515), Expect = 5.820e-58 Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFA-GGRVAG 342
MDQDG+FLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELT SHRQCVKPDQAITIYKLHDHETNEDYLEFDEE+IFQTACRMCLNIKSCLR G + TF GG+ AG
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLGKV---FSATFGKGGKSAG 112
BLAST of mRNA_Ecto-sp6_S_contig103.904.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.370e-26 Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVA 339
MD DG L++ CN C NK + C+ R+HN R++ V+ DEL HRQCVKPDQ +TI+KL D T E+ +E+ ++IFQ C C+++K+C+ GH+L DW P GR +
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRAS 113
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 759 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_001500.1 |
| Cds size | 759 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348741.4114578-CDS-Ecto-sp6_S_contig103:225234..225264 | 1682348741.4114578-CDS-Ecto-sp6_S_contig103:225234..225264 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 225235..225264 - |
| 1682348741.42221-CDS-Ecto-sp6_S_contig103:225396..225480 | 1682348741.42221-CDS-Ecto-sp6_S_contig103:225396..225480 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 225397..225480 - |
| 1682348741.4318037-CDS-Ecto-sp6_S_contig103:225740..226101 | 1682348741.4318037-CDS-Ecto-sp6_S_contig103:225740..226101 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 225741..226101 - |
| 1682348741.4414732-CDS-Ecto-sp6_S_contig103:226707..226826 | 1682348741.4414732-CDS-Ecto-sp6_S_contig103:226707..226826 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 226708..226826 - |
| 1682348741.4501529-CDS-Ecto-sp6_S_contig103:228197..228302 | 1682348741.4501529-CDS-Ecto-sp6_S_contig103:228197..228302 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 228198..228302 - |
| 1682348741.459715-CDS-Ecto-sp6_S_contig103:230759..230819 | 1682348741.459715-CDS-Ecto-sp6_S_contig103:230759..230819 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig103 230760..230819 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig103.904.1 >prot_Ecto-sp6_S_contig103.904.1 ID=prot_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=253bp
MDQDGVFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQC VKPDQAITIYKLHDHETNEDYLEFDEEVIFQTACRMCLNIKSCLREGHKL IDWRPTFAGGRVAGSSHPPPSPPASPPAPTPPPPPPPPADRGGGARRGGG GPGRAPRSARGRSASTSVVDDEMEVVEDYGDGGGSGRKVFPAGGRGRKGR TAAAAAAAAAGVAPQESTATRRGPHKRKSPASSAYPRSASSHQLVQLKVC YC* back to topmRNA from alignment at Ecto-sp6_S_contig103:225235..230819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig103.904.1 ID=mRNA_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5585bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:225235..230819- (Ectocarpus species6 EcLAC_371) ATGGACCAGGATGGCGTGTTCCTCATGCTCAAGATGTGCAACGGCTGCAG
CCACAACAAGGTGTGTGAGAGAGGCAGGCTCACACGGTTAACCCTTGTAC
GCCCGCCAATGTTTGTCTTTTCGTCTTTCGACATCCTGTCTCACCGTGTC
TCCCCTGCTGGCACGCACCCTCGGCGCTTGTTTTCGTTGTTGTGGTGGCA
TAGGCCGTACCCACCAGCAGGGTAAGCTCAGCCTGTAGTCCTGACCGGAG
GTCGACTTCGAATGGTGTCGATGGTCAATGTTACGATGGGGTCGCGTTTA
CCTGTCGAACACACGTTTCGAGGAATGACCCTTTGGTGCCGAGGGCGAGA
ATCGGGCACACACACCAGACGGGCAGGCAGCTCGGGGAGACTGATCGATC
CCTTTCTCATGTCTCGGCACTCCTCTCTACCGACACACACCAGTAGTCTA
ATGTCCTCGCACTACTGAGGCAGAGGACAACGACAATTAGGATGCTCTCT
CGGTGCGAATGGCGAGAACGACGACACTGCCGCTGCTGCTGCTGCTCGTT
CTATAGCAGTTTATGCATATCACACTTTTTAAAGCGGACAAGCTGCCCGA
TTGTGCCGTGCTGCCTCGTCGATTGTACCCCGCCTCCGCCTCGCTTCGCT
CGACAACACACAGCAGCAGTAGGGATCACACAAACCTAGAAGAGGGGGGA
GAGCTGAGCTTCATGTGTTGCTCGCTCCTTCCTATGCCGAGAAGTCGATG
GGGAGGGTTGTCCTGTTGAGACTCGAACTGCTGCCGCCGAGTCCCTCGAT
CGACCAATAAAACACCCTCTGTTGCCTCCAATTAAACATAACGCCGGCCG
TCGCAGCCGTCGAGGTTCAACGCCAACACGGTTATCATCTCACCCCTTCC
CAACCAATCCTGTACGCGAGCCTGCCCTAGAGGTCTGGCCGGTGAAGATG
GTCGGCCTAATGCTGTTGTTGTGTGTGGACGCGATGCGCTGAGCCGGGCA
GCGGCAGCGGTCAAATTCATCGTCAACCCTCCCATCCCCCACGCACGCGC
TCGTCGGACAATCGTCCAAAAACAAAATCGAGCACGTTCATCAAGAGTAC
ATTCGGTACTCCACTCACTGAAAAGACTCCGCCACATCCCGTTCGACTGT
GGGTATATCTCGAATGGGTAGTCTTTCTGTATGTTTTTTTAATATTCCTT
AATACGGTATGTACTTGGAGTACAGTAGTTGTGTGGCCGGATTCGCGTGT
TTGCTAATGAAGCCCGGCGTTAGGAGTGCAAACCTATATCGCATGGTGTT
GGCCTATCATCACGTCGCAAGATGGCGTACTTTTGAAATGACGCTACAAG
CGAGCTGCTTCCAAAAACATCAGGTTGTAGACTAGGCCTGTAGACTACAA
TGAGTAGCACACCCGTCTCCGGTAAGGCGATGTATTCAAAAACAGCAGTC
AAGCAGCACCCTGCTTCCTATTCATGGACGAAAGAGACCACCAGCTAGGA
AGATTTTTTTTTTTTTTTCAAAGTACAATTTACGGCGGGGTGAAGGACAC
CGCCCCGGCGTTGTGTCGCGTGGACCCACCTACATAGTCTTGCCAGGGGA
GGGGTCCACACACACCCTTTTTTCCATGTGGCATGTACCATGCTGCAGTA
CCAGTGCTTTTGCTTTTGTTCAAGTCACCAGGGTCTGGTTATTCCCATCT
TAGCCTCGCTCTTTCAAAGGCAGGAGGGGAGGGTAGGGGTGACTCAGGGA
AAGGAACCCTTGTGTGTGACCACGGGCCGGAGCTCCTAGCTACCCGGCAG
TGATGAGAGCGAAACACAAAAACGTTCGTCAATCGTCCGGGATTGGAGAT
CTAAACATTCCGCGACGGTACATACCTGCCTATCAAGAGGGTGGCCCTTG
GCTTAGACGGGAGGCCCTTCGAAACCATACTCTTTCTTCACAAGACCCTT
TGTTTGGAGGTTTGAAACAACGAAGACCGCACGAGCGACAGCGAGGGTAC
CTCTCATTTCGCGTGTAACGCATGTTACGGGTTATAGGATTGAACCTGTA
CGAGCCATCAACGCGAAACGCACGGCATCGCTCCACTTTCTGGGCAATGA
GGGACGACTGCTGCCCGCTCCCTTCGACGGCGGTCTTTGCGTGGCGTCTG
CACAACACATGACGGGAAGGCCGGTTGTTTAACATTCCCAATCGATGGCT
TCTCAGGGTTAACTGTAAGAGTGTTGCCACCACCCCATTATGAAGGCGAT
TGTGCGTGTGCTGGTTGCCTGAACTCGTTTCGATGGGCTTATTATCTGCT
CTCATTGCTGTTTAGAAAAAGACACATGTAATCGCAGAAAGGACTTGGTA
CGGCCGTTCGTGATGTAGCCACAGCATTTTCTACGATTTCCACAGATGAT
TGTTATTTTTTCGACCGCCCCTGTTCGTCTTTCTTTCTTTCTTCTTTTTG
CTCTCGACTGCGTATTCATCTTTATTTATTTCTGTTTTCGACCACGGCGG
CGGCGGCGCCCTCGCAGGGGAGCTGGAAGAAGTGCATGTCAAGGAGGCAC
AACCCCAGGATGTCCACGGTCCGTGAGGACGAGCTGACGTATAGCCACCG
ACAGTGCGTCAAGCCGGACCAGGTTAGCAACTCGTCGTTTCATTTCCACG
TTCCATGTCCTCCTTAGCAGCTTGGTTTTGAAGCAGTTTTTTTTAGCTCA
GGGCTGGCTATTTTGCCCTAATGTAGCCGTGTTCTCTTTCAGCTTTGTCT
TGAAGCAAGAGAGTGAGCTCGTCGGGGCTGGTTTTTTGTCTTAATGTACC
GGGTTCTATTAACAGCCCTGTCTTGAAGCAGTTCCGCTCTTACACAGAGC
TAGTCTGGGCTGGATAATTTTTTGGTCTTGTCGTCCGCTTTTAGAGAGCT
AGCTGGTTGGGGCTGCGGTTCTTTGTTGTGTTGTCGTGGCTCGGCTTTTT
CCGGCTCGGTTCTCTTTCACATTTTTTTTGTTTTCTTGCAGTTAGTTCCG
TGTGGAGAGCTCGACGGGGGCGGTCATTTTGTCTCTTCGTGTGGGCCGGG
TTGTTTCACCCGCTCGTCGCCGGGTGCTCCGGCTGGGGCGTCGCGGCTCA
AGCACCCTAGACCTGTCGGCCACGAGAACCTGGGCTACTGACTGCTGTTC
GTGGAGCACGCCTACCCACCGCCCCCCCCGACATACCCTTGCATACACTC
CCCCCATCAGCACTTTGCTGCACTGCTGCTGTAGAGCAACATGGTACCAT
GGAGGGGACTGTTCGGCGCCGGTTTATTGTATTGTGCCGGTATTTTCGGC
GGGCACGCACCGAACTACCAGGTCATGCCGTGCTTTGAATAGTGCCGGTG
TCCGGCATCGTGCCGGTGTCCGGTATCGTGCCTATGTCCGGTATAGTGCC
GGTGTCCCGCATAGTGCCGGTGTCCCGCATAGTGCCGGTGTCCGGTATAG
TGCCGGTGTCCCGCATTGTGCCGGTGTCCCGCATTGTGCCGGTGTCCCGC
ATAGTGCCGGTGTCCCGCATAGTGCCGGTGTCCGGTTTTGTGCCGGGCCA
TTCTCTGGGCACATGTACCGGCTCCGAACAGCTCCCCACACTGTAGTCGT
TTTTCGAAGCTTGTCCCGGTCCCCGGACCGCAGTTCGGTCGATTTTTTTT
ATTGCCCTCCTGTCAAAATTGGTGCTGCTTGCTCGTTCTTTTCGGATCCG
TGGATCCTCGAAATGACTCCCTTGAAAATATACAGCCCAGGTGTATGGCT
TCTACGATGCCGATGTTTTGTACGTGGAAGCTTGCTGAGGCAGCTGTAAT
TTTGCCGTCCCCTGGCTTTGACGCTTAGGCTTTTCTCACGACTACACGGG
GTGTGCCAGGTGTAGGCCTTCTACGAAGCCGATTTTTTTACGTACAAGCT
TGCTGAGGCAACTTTGATTTGACGCGACTCTCGCGCCTTCTCAGCCTGCG
CTCTTTCCCGCTATGCCGTCCCCTATCCCCTACCCCACGCCAGGCCATCA
CCATCTACAAACTCCACGACCACGAGACGAACGAGGACTACCTGGAGTTC
GACGAGGAGGTTATCTTTCAGACGGCGTGCCGCATGTGTCTCAACATCAA
GTCCTGCCTCAGGTGCGAAAAAAGACATGCGCGCTGGACGCCGTGCGGAT
GTAGCCGGGGTGTCTGTGCGGTTTTAGGGTTGGGAATAGTCAAGGTAAGG
TTGGGACCGCTTAGAAGAGTCAAGGCAACAACAACAAAAACAACAAAAAC
AACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCG
TTGTATGCAATTATCAACAAGAACTGCTGTCGGTGGGTAGATCGCTCTAG
GTTGTCCCGGCCCGATCTTGCGCAATATATCGTAGGACGATATCGGTTCG
CCAGATCGTTATGGTACTCAATCCACATTCCAAAAAGTTTTTCTCGGACA
AAGGCGACCCCTCGGATCAACCATCGTAGTCGATTTTTTTTTTCGAATTA
TTTAGCCAGGCAAATGTACCCGATTTCTCTGATCCTGCGTTGAGCCTGAT
AATCCTCCTAGTTCGTCGTCTTTGGCTCTGCTGGAAATCTTACGTTGGGC
CTGATAGCCTCCAATTTGGCTGCTTTGCCTCTTCCCTCTTTCTTTTTTTT
GTCCCTCCCCCTTTTTGTTCTTCACTCGCTGTTGTCGTGGTCGTTTTTTG
TCATTGCTTTGCTCTCAGGGAGGGACACAAGCTCATCGACTGGAGGCCAA
CCTTCGCCGGAGGCAGGGTGGCCGGCTCCTCGCACCCCCCCCCCAGCCCC
CCCGCCTCTCCCCCCGCGCCTACGCCGCCGCCGCCGCCGCCGCCGCCCGC
GGACCGTGGCGGTGGAGCGAGGAGGGGTGGCGGGGGCCCCGGCAGGGCGC
CGAGGAGCGCTAGAGGGAGGTCAGCAAGCACCTCGGTAGTGGACGACGAG
ATGGAGGTTGTCGAAGATTATGGTGATGGTGGTGGTAGTGGCCGGAAGGT
GTTCCCTGCGGGCGGAAGGGGGCGGAAGGGACGTACTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGGCGTTGCTCCGCAGGTGTGTTGTTGTGCCTGTCAG
GTGTTTTGGGTGTTTGTGTTTAGGTTTCTTGACTTGGAAACCTGTGTGTG
TGTGTGTGTTTTTTTGTATCTCCTACTTTTTTCTGCTCGAACCCCCATGA
GTTGTGTTGAGTTCTCTCTCTCTCGTTCGATCTAGTCCCGTGAAACCATG
ACAGTTACCAAGACATCATTTGATCCCTGTTTTTATGCCCTGCCCCTCCC
CCCGCCGCTTTATTTTCGCTCCATGTTTGCTTGGAAAAGGAGTCGACGGC
GACGCGTAGGGGTCCTCACAAGCGCAAGTCGCCGGCCTCTTCCGCGTACC
CGCGGTCCGCGAGCTCGCATCAGGTGACCATGCCGTGCACACAACCATCG
TTTGTTTGTTTTTCTAGTCTTTCCCCTCCCCTTTTTGGAAAATTGTCATG
CTGGCCTTTGTCCTCACAATGCTCTAAACAGCGACCGGTCTGTGTTTAAC
TCTAGCTAGTGCAGCTGAAGGTGTGCTATTGTTAG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig103:225235..230819- >mRNA_Ecto-sp6_S_contig103.904.1 ID=mRNA_Ecto-sp6_S_contig103.904.1|Name=mRNA_Ecto-sp6_S_contig103.904.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:225235..230819- (Ectocarpus species6 EcLAC_371) ATGGACCAGGATGGCGTGTTCCTCATGCTCAAGATGTGCAACGGCTGCAG CCACAACAAGGGGAGCTGGAAGAAGTGCATGTCAAGGAGGCACAACCCCA GGATGTCCACGGTCCGTGAGGACGAGCTGACGTATAGCCACCGACAGTGC GTCAAGCCGGACCAGGCCATCACCATCTACAAACTCCACGACCACGAGAC GAACGAGGACTACCTGGAGTTCGACGAGGAGGTTATCTTTCAGACGGCGT GCCGCATGTGTCTCAACATCAAGTCCTGCCTCAGGGAGGGACACAAGCTC ATCGACTGGAGGCCAACCTTCGCCGGAGGCAGGGTGGCCGGCTCCTCGCA CCCCCCCCCCAGCCCCCCCGCCTCTCCCCCCGCGCCTACGCCGCCGCCGC CGCCGCCGCCGCCCGCGGACCGTGGCGGTGGAGCGAGGAGGGGTGGCGGG GGCCCCGGCAGGGCGCCGAGGAGCGCTAGAGGGAGGTCAGCAAGCACCTC GGTAGTGGACGACGAGATGGAGGTTGTCGAAGATTATGGTGATGGTGGTG GTAGTGGCCGGAAGGTGTTCCCTGCGGGCGGAAGGGGGCGGAAGGGACGT ACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCGTTGCTCCGCAGGAGTC GACGGCGACGCGTAGGGGTCCTCACAAGCGCAAGTCGCCGGCCTCTTCCG CGTACCCGCGGTCCGCGAGCTCGCATCAGCTAGTGCAGCTGAAGGTGTGC TATTGTTAG back to top
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