mRNA_Ecto-sp6_S_contig103.879.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig103.879.1
Unique NamemRNA_Ecto-sp6_S_contig103.879.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig103.879.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.740e-54
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 2 
Query:    2 VDPVMPGAAAGFTAPAAAPAFNASEDEVKGESGPGVGGGGNILVGNSVEAASSEASRDSGDGLVPMTEWPIAKRAVGGMERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWMLCQAVAD 367
            VDPVMPGAAAGFTAPAAAPAF+ASEDEVKGESGPGVGGGGNILVGN+ +AASSEASRDSGDGLVPMTEWPIAKRAVGG+ERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWML  ++  
Sbjct: 1704 VDPVMPGAAAGFTAPAAAPAFDASEDEVKGESGPGVGGGGNILVGNNAKAASSEASRDSGDGLVPMTEWPIAKRAVGGLERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWMLVSSLTQ 1825
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BLAST of mRNA_Ecto-sp6_S_contig103.879.1 vs. uniprot
Match: D7FMR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR4_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.380e-51
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 2 
Query:  356 AVADRKPKLRSRRAGYFRKFCSGIVGPLGLVVGLSLALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDGSESDPCHVSLVGKGAILPGALRALEEG 649
            AVADRKPKLRSRRAGYFRK CSGIVGPLGLVVGLSLALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDGSESDPCHVSLVGKGAILPGALRA + G
Sbjct:   21 AVADRKPKLRSRRAGYFRKLCSGIVGPLGLVVGLSLALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDGSESDPCHVSLVGKGAILPGALRARKGG 118
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BLAST of mRNA_Ecto-sp6_S_contig103.879.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.530e-10
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2 
Query:  230 GGMERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWMLCQAVADRKP---------KLRSRRAGYFRKFCSGIVGPLGLVVGLSLALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDGSESDPCHVSLVGKGAILPGALRALEEG 649
            G ++RLLFA TMG VA+ L+++LW +S+P +A RIV W+L + V    P         +LR ++ G FR F    +G +  V  L  A+ L  V + GS +LW RG+  VFEW    + ++G       VS   K    P A+   E G
Sbjct: 1376 GMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCWVLYKVVETGDPDEVETFLSVRLRDKK-GKFRAFLWVFLGIIACVFALGFAVALCGVCVAGSFVLWLRGVCNVFEWAHWRLSEEGR-----FVSGETKKGTCPTAMPGQERG 1518
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BLAST of mRNA_Ecto-sp6_S_contig103.879.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.510e-7
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 2 
Query:  170 RDSGDGLVPMTEWPIAKRAVGGMERLLFALTMGPVALALSSVLWAISIPSLAGRIVRWMLCQAV------ADRKPKLRSRRAGYFRKFCSGIVGPLGLVVGLSLALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDG 568
            R  G+G VP+T         G ++RL F LTMG VA+AL+S+LW +S+P +A R+V W+  +         D +     +R G  R+    +       + L  A  L    ++GS  LWFRG++ V+EW+     ++G
Sbjct:  183 RQEGEGFVPITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETNAPVKR-GKLRESLLALGTIAACWLALLFAAALCGACIVGSFFLWFRGVWNVWEWVRWRRSEEG 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig103.879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMR2_ECTSI1.740e-5490.98Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMR4_ECTSI1.380e-5195.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB40_9PHAE1.530e-1036.24Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI7.510e-732.37Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig103contigEcto-sp6_S_contig103:16550..21508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score203.8
Seed ortholog evalue8.9e-50
Seed eggNOG ortholog2880.D7FMR2
Model size1543
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.store-operated calcium channel activity
EggNOG OGsKOG3609@1,KOG3609@2759
Cds size690
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig103.879.1prot_Ecto-sp6_S_contig103.879.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig103 16563..20668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.7752075-UTR-Ecto-sp6_S_contig103:16549..165621682348739.7752075-UTR-Ecto-sp6_S_contig103:16549..16562Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 16550..16562 +
1682348739.8280857-UTR-Ecto-sp6_S_contig103:20668..215081682348739.8280857-UTR-Ecto-sp6_S_contig103:20668..21508Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig103 20669..21508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.7850523-CDS-Ecto-sp6_S_contig103:16562..168981682348739.7850523-CDS-Ecto-sp6_S_contig103:16562..16898Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 16563..16898 +
1682348739.7934058-CDS-Ecto-sp6_S_contig103:17603..178161682348739.7934058-CDS-Ecto-sp6_S_contig103:17603..17816Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 17604..17816 +
1682348739.8017423-CDS-Ecto-sp6_S_contig103:18421..184971682348739.8017423-CDS-Ecto-sp6_S_contig103:18421..18497Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 18422..18497 +
1682348739.8101695-CDS-Ecto-sp6_S_contig103:20360..204231682348739.8101695-CDS-Ecto-sp6_S_contig103:20360..20423Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 20361..20423 +
1682348739.8193874-CDS-Ecto-sp6_S_contig103:20666..206681682348739.8193874-CDS-Ecto-sp6_S_contig103:20666..20668Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig103 20667..20668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig103.879.1

>prot_Ecto-sp6_S_contig103.879.1 ID=prot_Ecto-sp6_S_contig103.879.1|Name=mRNA_Ecto-sp6_S_contig103.879.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=230bp
MPGAAAGFTAPAAAPAFNASEDEVKGESGPGVGGGGNILVGNSVEAASSE
ASRDSGDGLVPMTEWPIAKRAVGGMERLLFALTMGPVALALSSVLWAISI
PSLAGRIVRWMLCQAVADRKPKLRSRRAGYFRKFCSGIVGPLGLVVGLSL
ALVLVVVSLLGSVLLWFRGLYEVFEWLTQPIEQDGSESDPCHVSLVGKGA
ILPGALRALEEGGIHVAGDRRREEPYRGR*
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mRNA from alignment at Ecto-sp6_S_contig103:16550..21508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig103.879.1 ID=mRNA_Ecto-sp6_S_contig103.879.1|Name=mRNA_Ecto-sp6_S_contig103.879.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4959bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:16550..21508+ (Ectocarpus species6 EcLAC_371)
TGTCGATCCTGTTATGCCCGGCGCTGCTGCGGGTTTCACCGCCCCGGCTG
CTGCGCCTGCCTTCAACGCTTCGGAAGACGAAGTGAAGGGAGAGAGTGGT
CCTGGTGTTGGCGGTGGCGGCAATATACTTGTCGGCAACAGTGTTGAAGC
TGCTTCCTCAGAAGCATCACGTGACAGCGGCGACGGGTTGGTGCCCATGA
CGGAATGGCCGATCGCTAAGCGAGCGGTGGGGGGCATGGAGAGGCTGCTG
TTCGCGCTCACCATGGGCCCCGTCGCTTTGGCCCTGAGCTCCGTCCTGTG
GGCGATCTCGATCCCGTCACTGGCGGGGCGTATAGTGCGGTGGATGCTGG
TGAGCTCACTGACGCAGTTAGCTGTCCTATCGATACGCGAACCACAACGC
GGTTCCTGCCGTTCGTCTTGGGTTAGCGACCAGGCTGATAGTCTTTGGCG
GCGAAGATTGGTCCTGGCCTAGGACTGCAGTGCAAAATTGACTTCGTGTA
TAAGTGTTGATCATCGAGGCTCGTTGTCGTTATTTTTCTGCGCAGCCGGA
GGCGAAGATCTAGCAGCAAGGGACGTTCATGTATGATGTCAAACGGACAT
GAAATTAGTTGTTACTCGCAACCGAGACGGCGCCGACAACATGCAAGCCA
CCGACAGTTACCTGCGACGACGACTAAATTTGGAACAATGAGGTTCTTGT
GAGGTTTTCTTTTTAAACCTCGTGGTCTTCTCGAAGACATTCGAGCCCCC
CTCTTTTTTATCAAGTCCCAGTCTGCCCCCCAAGCGTATCATTCCTGCAA
TACCTTGCCCTTTTACCTTTCACTTGTCACCCCCAAGGCCTCCACCCCCA
CCCCACCCCCCCTTCTTTTCTGGTCCCCCTCCCACCGCCCTTGTTCTACA
TTTTCCTGAGACGTTATGGTGGCGCCGGTCGAAACACCGCAACCTCCACC
GCCCTCTGCCCCCTCTGACCCGCTAGCACGTCAAATCTCAACCTAAAGGC
CGATCAAAACGCAGGGGTGTTGCGCCGCCATGACCCCCCTCTGTGACCAA
TTAGTGCCAGGCGGTAGCAGACAGGAAGCCGAAGCTGCGATCGCGACGAG
CCGGATACTTCCGCAAGTTTTGCTCCGGAATAGTCGGGCCGCTTGGTTTA
GTAGTCGGTTTGTCCTTGGCCTTGGTCCTCGTCGTGGTCTCCCTGCTTGG
CTCCGTCCTTCTCTGGTTCCGGGGCTTGTACGAGGTGTTTGAGTGGCTTA
CACAGCCCATTGAGCAGGTCAGAAGAACGAAACAAGTGCCGCAGTTGTTG
CGTCTCCCTCCCACCGAGTATTGCACGCAATTTTGATGCTACTATCGAGC
GAGTTCATGATAAAGAATGGGATCCATCGCGTGTTCGAGACAGTGTGTTG
GCGCGATGGAATTGACGCAACAAGCAGATAAAAACGAAAAGTAGTTCATA
GCGAAGTGCGTTCTGTTCCCTACGAGACGGAAGTTCTCAAGCCGCTACAT
GAACCATGTTGAAAATGTCCTCAGAGTACGGCGGTGGGATCGGAACTGCT
CTCCTGAGACGGTAGACTCGACGTATGCCCCCTTGACGTTTCAAAGCGTT
GCCCGTAGCTACGCCAGATTCAAGTAACGTTAGAATGGAACAACTTGTGC
AGCGTGTTTTCTCCGCATGTTGATGCACGTCTCGGCGAAACCTCTGCTCG
CTTTGAATGGACGGACTTCCTTCCATGGCCGGTATTCTGCTATCGTGCCA
GACATCGGCCTCGCCGCACTTCTTTCAACGCACCCTTGAGATACTTTTCG
TGATTCATGGCCATGTAGACATGTGAGGTAAATTTCCCATTCGGTTGCAA
ATGCTTGCGCACCTTTTTACAGGATGGAAGCGAGAGCGACCCGTGCCACG
TCTCGCTCGTCGGCAAAGGGGCCATCCTGCCCGGTGCGTTACGCGCACGC
AAGGGGGGTTGGCAAGACGCCATCAGGGTTGTGGAGGTACGAGATATCAC
AACACTGGCCCGGGTAGAGCGGTCAATTGTGACCGGTGGAGAGCCCAGTT
AGCGTCGTACCACGGAAAACCTACCACCGCGTGCGCTATGGTTTCATCGA
AGCATCTTTGCCTCATATCGAGGGATACGAATTCGTCTCATGTTGGGCTA
GGGTCCGGGGAATCGGCCCCGGTCGAGAAACGTCCAGCGGTGTTGTGTTT
GTCAGTGGTTGATTCTACCTTACGAGGTTGTCGTGCAAGGCACGGCATAG
ACACGTTCGGGCCGTGGCGGACATGCCCGTGTTGCTTTCATTTCGTCCTG
CGTGTCACGCGTCCGAGCCATAGGGCCCTACCCGCTGATAGTCTACCGTG
GTACTGACGCATGATGCAGCATGCGCTCCCACTGGAGATCCTCTTAACGT
AAGAGGCGGAGAGATGGTACCCCCCGCCAGACCGACTTTCAAAGCTCGAT
TGCTCCACAAAGGGATGCGCAGAAAGAGTCCGATGCGCCTACGGAAAGCT
TCGACAAGATGCTCCCGAAACCGCCATGTTTGGTGTTGGCACAATCTTGG
TTGTAGAGTAATCCAGCTTTGAAAATCGGTCTAGGTGCCTTCTTCGCGGC
CTCTTGCGTATTGTTCCCGAGGCTCTGTGTGGGGTATGCCAGTATCGACT
ATTTATCTAGGTTTTAGTCTAGGACTCTTGACTGGGCACCTGTTATATTA
GTCAAATATTCCAACCCAATGTCATATTGAGCGTTAGTTTCGTAACTCCC
GGGTTCTGAAAGCGGCGGTGCTTACTGTATCATGTCGCGTTCCGCCTCTT
CTGGTTGGTTGCCTTGCGCCAGGCCAGCAACTACGGACCGATCGCGCAGA
GGAAAAAACACATCGTGGGAGGGCCGGTTCCTGGGCACTATGACGTGGGA
GCACTCCTGCAGATGACAACCGGGTGGACGTTGGGCCATCTGTCTTCGCT
CGTCAGGTTGGTCATAGGATTTATTCACCATTTCTTGTTGTTGTGGTGTG
CTCATAGTTGACTTGCGTGTCGTGATCGACTATTAGGTCCGTATTTGGGA
CTGGTTAGAGCTCGTTTTTTCCTCGCGTGACGAACAGCTTCATCTGGTTC
TATCGACCCCTTTCCAAGTATGTCTAACTCCTCCATCGCCCCGAGTTTTC
GCTGTCAAGCTTGCTCCGCCGTTAGATCTGATCGGGTTTTGTCCCATCCT
TTCGAGCGTGTGCTTTTCTCGGCAACCCCTGTCGTGCCGAGTCGGGTACG
GTCCACGCTTTATTTCAAGTTGTTTGAAAACCCGTCGTTGGCTTCAGGTT
GAAATTGAATCCATTATGTTCAGGGAAATGGTGCCAGTCGTGGTGGAATG
AAATGGCTGTTTTGCACTCCCACAAACAATCATATTATCCAACAGCAGCG
TGCGCACATGTATGGACGAAAGAACTGTCATCCGAAGCATTCCGATTTGG
AGGCACATATGTGTTTGTGAACCCTCCTGGTGGCCCTGCAAGCAGTGTCA
TTCTTACACGTGGTGTGCGTGCATTCTGTTCACGGCTTGGTGTCAAGGGA
CTACGAAATACCAGTTTCCCTTGCTTCCCGGGGAGGCAACAGAAATCACG
TATGCTCTAGTTGCTCTCCCGGCACCCACCTCCAGTACATGAGTATTCCC
TCGCCTCTGGTAGCATGCGCAGCAAGGGACCGCACAACACGGTTCCTCGA
CTCCGTCTACTACAAGCAGTCCTTACCCATAATGGGCACAGTCACACTCG
ACCCAACATCACTGTGGTACCCTCTCCCCTCGTCTGACTCGCCAGGATGA
AGGAGGAGGAGTCGAGGAAGGAGGAATCCATGTTGCGGGAGATCGACGAC
GAGAGGAGCCGTATCGAGGCCGCTGTAAGTCCTTGGCAGTGCTGTCTGTA
GAGTACCAGGTAGTAATCACCCTGCGATGTTTTCTCCACGGTATTGCAGA
CTCTTTCGCGGCCCTCTACATCTCGCAACGTGGGTAGTGCTTGGAGTTGA
GCCGACACATCATACAAAGGCACGTTATTACTTATTATGTAGACTAGATG
ATGCAATGGTTTGTTTATCTTCAACCAATCTTGACGTCGTTTTCACATGC
GACGAAAATGCTGACAGGATGCGGCAGAAACGGAGTATGGGAGGCGCGGA
GGCATTGGCAAGCGCGTCTCATTTTATGAAAACTGACATGGGTACACGGC
AGGCGGGCCAGCATAAGCACAATGGACAAGCAGAGTAGATAAGGAAGACA
CACGATCCCGCTGACACAAATATTAGGGAAGGCACCCAGTAATGATAGAT
ATATAGCAGGCCTGCGCGGCTCTTCGTGCCGGGACAAGGGAAATGTCCGA
TTGAGTTATGCTATGCCGTAGTATCGAAACCATAGGCTTCGGCGTCGATC
GGGAGCAGCGCATCAAGTTGGAATGCCGCAGGGGTAGTAGGTGAGCTGGC
AACGTTGTACGTAGAACGGTAGAACGGTCACATTTGTTTTGGGCGGCGGC
CAGCGGAAACAAATAACCCCCCGCACTTGCCTGCCCACACTTACTTGCAC
TGACAGCAGTCTTTTGATTGTATACATAACCTCAGAGAAACACCACCCGT
TCGAGATAACACCACAGCAGTCGAAGGGGATGTGTTGAGGTCTTTATAGT
GAGTGAAGAAACCGGCTGGATATAGGGTCTTTTTGAGACTGCACACTGAC
ATATTGTCAGTGATAATGCCAGCAGGTGCTACAGTAGTAATCACACAATC
ACTCTACAGTTGTATAGGTATACATATCACCAGACATCTCCCCCGTAGTT
TTGCTGTCTACAGAGGTCAAGACAAAAAAATCGAGGAGAAACCCTCTGTT
ACGTCGTGTGTTGTGACATTCTGCCTTCACAGGAACACGCCGCATTGCCG
CTTGGTTGCTGGAACTAGATGATTGCTGCTGTTGATCTACTACAATTAAT
ACATGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig103:16550..21508+

>mRNA_Ecto-sp6_S_contig103.879.1 ID=mRNA_Ecto-sp6_S_contig103.879.1|Name=mRNA_Ecto-sp6_S_contig103.879.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp6_S_contig103:16550..21508+ (Ectocarpus species6 EcLAC_371)
ATGCCCGGCGCTGCTGCGGGTTTCACCGCCCCGGCTGCTGCGCCTGCCTT
CAACGCTTCGGAAGACGAAGTGAAGGGAGAGAGTGGTCCTGGTGTTGGCG
GTGGCGGCAATATACTTGTCGGCAACAGTGTTGAAGCTGCTTCCTCAGAA
GCATCACGTGACAGCGGCGACGGGTTGGTGCCCATGACGGAATGGCCGAT
CGCTAAGCGAGCGGTGGGGGGCATGGAGAGGCTGCTGTTCGCGCTCACCA
TGGGCCCCGTCGCTTTGGCCCTGAGCTCCGTCCTGTGGGCGATCTCGATC
CCGTCACTGGCGGGGCGTATAGTGCGGTGGATGCTGTGCCAGGCGGTAGC
AGACAGGAAGCCGAAGCTGCGATCGCGACGAGCCGGATACTTCCGCAAGT
TTTGCTCCGGAATAGTCGGGCCGCTTGGTTTAGTAGTCGGTTTGTCCTTG
GCCTTGGTCCTCGTCGTGGTCTCCCTGCTTGGCTCCGTCCTTCTCTGGTT
CCGGGGCTTGTACGAGGTGTTTGAGTGGCTTACACAGCCCATTGAGCAGG
ATGGAAGCGAGAGCGACCCGTGCCACGTCTCGCTCGTCGGCAAAGGGGCC
ATCCTGCCCGGTGCGTTACGCGCACTCGAGGAAGGAGGAATCCATGTTGC
GGGAGATCGACGACGAGAGGAGCCGTATCGAGGCCGCTGA
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