mRNA_Ecto-sp6_S_contig102.872.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.872.1
Unique NamemRNA_Ecto-sp6_S_contig102.872.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A6H5JE14_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE14_9PHAE)

HSP 1 Score: 383 bits (983), Expect = 1.630e-126
Identity = 241/265 (90.94%), Postives = 247/265 (93.21%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSEAIAHRREADASASAGSATSGAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGTGAPGAAGGEFFCWVSVAVAMGVCGAAYVLATVE 922
            MASDMAT+RLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNP+WSVSTILMGLYSFMLDNAATLGS+TSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSEAIAHRRE D+S+SAGSAT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          GEFFCW SVAVA+GVCGAAYVL TVE
Sbjct:    1 MASDMATKRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPVWSVSTILMGLYSFMLDNAATLGSITSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSEAIAHRREVDSSSSAGSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GEFFCWASVAVAIGVCGAAYVLVTVE 263
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: W2KBB3_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2KBB3_PHYPR)

HSP 1 Score: 262 bits (670), Expect = 2.640e-80
Identity = 128/190 (67.37%), Postives = 156/190 (82.11%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSEAIAHRR---EADASASAGSATSGA 688
            MAS MAT+RLRKE +A++R P+D I A+P++ NILEWHYVITGTKG+PYEGG YHGKLKFPPEYPMKPPSVMM+TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N ATLGS++++ AQK+++A  SLE NC N  FRKLFPDLV L E R+ +    R+   +   S S+GS+T GA
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKYAVASLETNCTNATFRKLFPDLVALQEEREKDQELLRQLTPDGATSTSSGSSTKGA 190
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A3M6VRT7_9STRA (UBC core domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRT7_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.310e-79
Identity = 120/164 (73.17%), Postives = 143/164 (87.20%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRK 619
            MAS MAT+RLRKE +A++R P+D I A+P++ NILEWHYVITGTK +PYE G+YHGKLKFPPEYPMKPPSV+MMTPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N ATLGS++++ AQKK++A  SLE NC N  FRKLFPDLV LHE R+
Sbjct:    1 MASAMATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKDTPYEDGYYHGKLKFPPEYPMKPPSVLMMTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKKKYAAASLETNCSNATFRKLFPDLVALHEERE 164
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A8K1FJB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJB7_PYTOL)

HSP 1 Score: 258 bits (660), Expect = 6.330e-79
Identity = 120/171 (70.18%), Postives = 147/171 (85.96%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSEAIAHR 640
            MAS MAT+RLRKE +AI+R P++NI A+P+++NILEWHYVI GT G+PYEGG+YHG LKFPPEYPMKPPSVMMMTPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFM++N +T GS+ ++ AQK++ A ESLEVNC N  FRKLFP+LVELH ++ +E  A R
Sbjct:    1 MASAMATKRLRKEYLAIQRKPVENIQALPLESNILEWHYVIQGTSGTPYEGGYYHGCLKFPPEYPMKPPSVMMMTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMIENQSTYGSIKTTDAQKRKHAAESLEVNCNNALFRKLFPELVELHHKQVAEQEALR 171
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.200e-78
Identity = 120/166 (72.29%), Postives = 143/166 (86.14%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSE 625
            MAS MAT+RLRKE +A++R P+D I A+P++ NILEWHYVITGTKG+PYEGG+YHGKLKFPPEYPMKPPSVMM TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+  ATLGS++++ AQK+++A  SLE NC N  FRKLFPDLV L E+R  E
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPSVMMTTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLETQATLGSISTTDAQKRKYAAASLEANCTNATFRKLFPDLVTLQEQRDKE 166
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: H3GEL4_PHYRM (UBC core domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GEL4_PHYRM)

HSP 1 Score: 258 bits (659), Expect = 1.200e-78
Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSE 625
            MAS MAT+RLRKE ++++R P+D I A+P++ NILEWHYVITGTKG+PYEGG+YHGKLKFPPEYPMKPP+VMM+TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML++ ATLGS+++S AQK+++A  SLE NC N  FRKLFPDLV L E R+ +
Sbjct:    1 MASAMATKRLRKEYLSMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPEYPMKPPAVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLESQATLGSISTSDAQKRKYAAASLETNCSNATFRKLFPDLVALQEEREKD 166
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A0P1AWA5_PLAHL (Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA5_PLAHL)

HSP 1 Score: 258 bits (658), Expect = 1.380e-78
Identity = 122/182 (67.03%), Postives = 152/182 (83.52%), Query Frame = 2 
Query:  140 MATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELH-ERRKSEAIAHRREADASASAGSATS 682
            MAT+RLRKE ++++R P+D I A+P++ NILEWHYVITGTKG+PYEGG YHG+LKFPPEYPMKPPSVMM+TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N ATLGS++++  QK+++A  SLE NC N  FRKLFPDLV L  ER K E ++ R E D+S +  S+T+
Sbjct:    1 MATKRLRKEYLSMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGRLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSMSTTDGQKRKYAATSLETNCANATFRKLFPDLVALQAEREKDEELSRRLETDSSLATSSSTT 182
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: K3WBL5_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBL5_GLOUD)

HSP 1 Score: 257 bits (657), Expect = 3.000e-78
Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSE 625
            MAS MAT+RLRKE +A++R P++NI+A+P D+NILEWHYVITGT GSPYEGG+YHG LKFPPEYPMKPP+V M TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N  TLGS+T++ AQK++FA  SLE NC N  FR+LFP+LVEL + R +E
Sbjct:    1 MASAMATKRLRKEYLALQRKPVENIIAVPQDSNILEWHYVITGTSGSPYEGGYYHGCLKFPPEYPMKPPAVYMTTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQPTLGSITTTDAQKRKFAACSLETNCSNATFRRLFPELVELQQERDAE 166
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: M4BC77_HYAAE (UBC core domain-containing protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BC77_HYAAE)

HSP 1 Score: 254 bits (649), Expect = 3.630e-77
Identity = 117/166 (70.48%), Postives = 143/166 (86.14%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRKSE 625
            MAS MAT+RLRKE +A++R P+D I A+P++ NILEWHYVITGTKG+PYE G++HGKLKFPPEYPMKPPSV+M+TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N ATLGS++++ AQK++FA  SLE NC N  FR LFPDLV L + R+ E
Sbjct:    1 MASAMATKRLRKEYLAMQRKPVDYIRAVPLETNILEWHYVITGTKGTPYEDGYFHGKLKFPPEYPMKPPSVLMLTPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQATLGSISTTDAQKRKFAAASLETNCSNAVFRNLFPDLVALQKARERE 166
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Match: A0A484E228_BRELC (UBC core domain-containing protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E228_BRELC)

HSP 1 Score: 253 bits (647), Expect = 6.940e-77
Identity = 117/164 (71.34%), Postives = 140/164 (85.37%), Query Frame = 2 
Query:  128 MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYEGGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNPMWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFRKLFPDLVELHERRK 619
            MAS MAT+RLRKE +A++R P++ I A+P++ NILEWHYVITGT GSPYEGG YHGKLKFPPEYPMKPPSVMM+TPNGRF  ++RLCLSMSDFHPE+WNPMWSVS+IL GLYSFML+N  TLGS++++  QK+++A  SLE NC N  FRKLFPDLV L E R+
Sbjct:    1 MASVMATKRLRKEYLAMQRKPVEYIQAVPLETNILEWHYVITGTTGSPYEGGFYHGKLKFPPEYPMKPPSVMMITPNGRFKTNQRLCLSMSDFHPETWNPMWSVSSILTGLYSFMLENQTTLGSISTTDGQKRKYAMASLETNCSNATFRKLFPDLVALQEERE 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE14_9PHAE1.630e-12690.94UBC core domain-containing protein n=2 Tax=Ectocar... [more]
W2KBB3_PHYPR2.640e-8067.37UBC core domain-containing protein n=12 Tax=Phytop... [more]
A0A3M6VRT7_9STRA1.310e-7973.17UBC core domain-containing protein n=1 Tax=Peronos... [more]
A0A8K1FJB7_PYTOL6.330e-7970.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RXI9_9STRA1.200e-7872.29UBC core domain-containing protein n=3 Tax=Phytoph... [more]
H3GEL4_PHYRM1.200e-7871.08UBC core domain-containing protein n=6 Tax=Phytoph... [more]
A0A0P1AWA5_PLAHL1.380e-7867.03Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara... [more]
K3WBL5_GLOUD3.000e-7871.08UBC core domain-containing protein n=1 Tax=Globisp... [more]
M4BC77_HYAAE3.630e-7770.48UBC core domain-containing protein n=2 Tax=Hyalope... [more]
A0A484E228_BRELC6.940e-7771.34UBC core domain-containing protein n=2 Tax=Bremia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:518003..526671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score411.8
Seed ortholog evalue2.5e-112
Seed eggNOG ortholog2880.D7G983
Model size1918
KEGG koko:K04554
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsKOG0894@1,KOG0894@2759
Ec32 ortholog descriptionPutative ubiquitin-conjugating enzyme E2
Ec32 orthologEc-13_002970.1
EC2.3.2.23
Cds size798
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.872.1prot_Ecto-sp6_S_contig102.872.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 521427..525678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.0789466-UTR-Ecto-sp6_S_contig102:518002..5180811682348739.0789466-UTR-Ecto-sp6_S_contig102:518002..518081Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 518003..518081 +
1682348739.0904176-UTR-Ecto-sp6_S_contig102:521378..5214261682348739.0904176-UTR-Ecto-sp6_S_contig102:521378..521426Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 521379..521426 +
1682348739.1445673-UTR-Ecto-sp6_S_contig102:525678..5266711682348739.1445673-UTR-Ecto-sp6_S_contig102:525678..526671Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 525679..526671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.0996242-CDS-Ecto-sp6_S_contig102:521426..5215041682348739.0996242-CDS-Ecto-sp6_S_contig102:521426..521504Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 521427..521504 +
1682348739.1096923-CDS-Ecto-sp6_S_contig102:521920..5220311682348739.1096923-CDS-Ecto-sp6_S_contig102:521920..522031Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 521921..522031 +
1682348739.118389-CDS-Ecto-sp6_S_contig102:523014..5232181682348739.118389-CDS-Ecto-sp6_S_contig102:523014..523218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 523015..523218 +
1682348739.1272342-CDS-Ecto-sp6_S_contig102:524526..5246521682348739.1272342-CDS-Ecto-sp6_S_contig102:524526..524652Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 524527..524652 +
1682348739.1361134-CDS-Ecto-sp6_S_contig102:525399..5256781682348739.1361134-CDS-Ecto-sp6_S_contig102:525399..525678Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 525400..525678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.872.1

>prot_Ecto-sp6_S_contig102.872.1 ID=prot_Ecto-sp6_S_contig102.872.1|Name=mRNA_Ecto-sp6_S_contig102.872.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=266bp
MASDMATRRLRKELMAIKRNPIDNIVAMPMDNNILEWHYVITGTKGSPYE
GGHYHGKLKFPPEYPMKPPSVMMMTPNGRFACSRRLCLSMSDFHPESWNP
MWSVSTILMGLYSFMLDNAATLGSVTSSTAQKKRFATESLEVNCKNPAFR
KLFPDLVELHERRKSEAIAHRREADASASAGSATSGAGLTTGAAAAAAAA
AGGGVPSGGKAGSGASAGGGGRAAGGGGGVGTGAPGAAGGEFFCWVSVAV
AMGVCGAAYVLATVE*
back to top

mRNA from alignment at Ecto-sp6_S_contig102:518003..526671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.872.1 ID=mRNA_Ecto-sp6_S_contig102.872.1|Name=mRNA_Ecto-sp6_S_contig102.872.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8669bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:518003..526671+ (Ectocarpus species6 EcLAC_371)
TAGCCAGAGATAATCAGGCAGCCTTGACTGAGGAAGGGAGGGTGGAAAAG
GGCTTGCTGCCGCCGGGCTGACCTGAAAAGTGAGAGATCCTGGTGCTTTT
GTTGTTGCCATGTAAGATGTAAGACCGAGCTTCCATGTTTGCTGTCCGGC
TTGAGTATGGAGAGAGCGATGATCTCTCCGCTCCTTAGGCGGCGTCGTTG
CCGTGGCTACTGGTCACCCAACTCCACTAGTCTTGCGGGGTCAGTGCAGT
GCAGGTGACGCTATTCAGATGCAAAGAGCTATGATGGTACGTCGGTTGTG
CCACCCCCTCCCTACAACGTGCGTGCAATGTGCAAGACTGCTGTGGAACG
CCTCTGTGGGGGCAGAGAATGCGCCGCCCCCTTTTTTCATCATTCGCAAA
TCGAACTTACAGCAGTACGCGCTCATACGTTGCTCTCCTCACACCTCCAA
CGACATAGACACGCGCCGTAAACGCTGCAACGTGTTGCTCCGCTCCCGCA
CGCACGCTCGATTAGATCCCAGAGCAGCGAAAAAAACGCCCTCGAGATGT
GTGGGCATACGTACAACGCCACACCTTTTCCTTGCATACAAGACGCGGAG
GCATCCATCCGCGCCTTCACCTTTTCCTTGCATACAAGACGCGGAGGCAT
CCATCCGCGCCTTTTCCTTGCATACAAGACGCGGAGGCATCCATCCGCGG
TCTTCTCTCTCTCCGTTGCATCTCGCAGAATACACCTCACTGCCTCACGC
TTTGTTTTGCGCTTGGCGCAGCACCAGCCTGATGGAACGAGGCTCGTGTG
CGCTCCGTTCCAGCCTTGTCGCAAATATAAGATAGTCAGTTGATTGAAGG
GTGGGTAGATAATGCCTCGACTCGACCGACGGGGCACATAGCATGCCGTA
ACTTCACGACACAAGACAACACACACCCTGGCCCGACTTTCAACGCTCCA
TTTATCAACAGCAGAAAGCTTCGGGGCACCGAAAACGGCGGCGTTGGAGC
CCTCTGGTCGAAAGCTCTCCGAAAACGCGTCGTTTCGTGTATGTATGCGC
CCGCTTGGTCTTGGAGTAATCGAGCTTTGAAAGTGGGTCCAGGGGGTGTG
TTATCTTGCGTTTTGTATGGCACCCGCGCCTGCATGAAAATGATGCCACC
TCGCCGGTGGTAACAGCAGTCATCATTGCGGTTGGTATAAAGATGACTTG
GAAGGCAGCAGTGCGAGTCACCATACCCCCCCCTTTAGGCCGAGACCTCC
GTTGCTCCACAAACAAAGATGCTCGCCATCTCCATGTCTATTATGGGCGG
TCTGAGGCCTCTACTGCTGCAGGGTGCCCTCCTGCATGAAAATGAGTCCC
ACTGGCGGCAACCATAACCATCATAATCCCCGTTGGAATAAATATGCGTA
GGAAAATGGAAGCAAGCCACACACACACACCCTTTTTAGGCAGAGACCTC
CACGTCTCCACAGCCACCAAATATGCTTGCCATCTCCATGTACATTACGG
GCGGTCTGAAGCTACTGTGTACCTACGGCCGGGTTCCCTCCTTGATGGAA
ATTATCCCACCCTCTGTTGGTGACAACCGTCATCATCCTCGTTGAAACTT
ATACACCTTGGGAGCAGCAGCGCGAGTCATCATGACTCCGGCTATTGGCC
GAGACCTCCGTTGCTCCACAACCAAAGGTGATTGTTATCTCCATGTCTAT
CATGGGCGGTCTGAAACCTACAGCGGTATGTAGGGCGTGTCATCCTACAG
AAGTATGATCCTTTACTGGCGACAACCATAACCATCATCATCCCCGTTAG
AAATAAGATGCCTTGGTAGATGGCAGCAGTGCGGGTCATCACGCACCCCC
CGCCCGTTTTTTTGGCCAAGACCTCAACTGGTCCACAAGCACCAAAGATG
CTTGCCGTCACCGCAAACGGGTTTTGAGGGTCTTGGAAACGATCTCGCCC
GGAGCGGAGAACTTCCACGTCGCGCAAGCCAATGGTCGCTTTTTTCACAA
CCTCCCCTCCGGTCGTGGGGCACACCAACTTCTCGACAATGAGAGGGTGT
CCCCATTTTGCGATGGTATCCGCGTGTATCCCGGGTTGGACTCTAACGTC
GTTCAATCTTCTCAGCAAGTGTAGCAGCCTTGGAAATAGTGAAGAAGTCG
GGTCGCGAAGCAAGTGAGGGCATGAAAGTACAGTGAGACCATCGCTCGTA
TGCCGCGCAGCAGTTAGTGGGTGGGGGATTCGACGCCGGTTACATGTGAG
ATGACGTAGCATAGGCGAGTCACATGCTTTGTCCTAGTTGGTCGGAAAAC
AAGGGGGTAGCATGAAACTTCGGCCAAAACCGGCGGTGTTACGTCTGTCG
CCGTTCTGAGTGGAGATAAGAAAGTTGTTGCATGAGCTTGGGGGATTCGA
ACCAGGCGCTCTTTTCCTGCGATCGTACGGACGCAATCCCATGTGCACGG
CTTGCCCTTGGCCCCGCCCTCTGCTCCGCGCCGCTTCAGCGACGGTAGCA
TATTCAAACACGCAGTACCGAACGCGCCCACCAGTTGTAAGAACAATCAG
TGTGTGCCGAGCGTTGTTTTGTGTGCCGTAACATCAATTGTCGAAACCCC
GAAAGCACAACAATATCGTGCTATTTTCTATGTGGGGTGAATCACCCGCT
CCTTTATACTTATTTTGGTGGGGGACAAAGCTGGAAAAGCCTGCTGTTGT
GGTGAAGTTTCTCAAGGTTCTATTTTCAAGGTTCTATTTTTCTTGGGTAT
GAAGCTCTTACCTCCCAGTTTATCATGGTATGTGACGCAACAAAGCCATC
TCTATCCGTAGAGAAGAACATTCTCCAAGGGTGTGTTTAGTAGCTTATCG
TTCGTGAGACACTCCGCAGTGTTGTGGGACCGCGGATGAACACCTTGCAG
AGAATGAGAGACGGAGACAGAGAGGGAGAGAAAAACCGAGACAGAGACAG
AGACAGAGACAGAGAGAACTAGGGAGACAGAGATGGAGGCATAGGCAAGA
CAGGGACAGAGACAGAGGCAGACAGACTGACAGACACACAGACAGACAGA
CAGAGGCAGAGGCAGAGACATTAACAAAGCAGCTAGGTGTTTGCAGTTAC
CTCCAAGAGGAGCGCGAGCGGTGAGTGCTCGATCTCTCGAAAGAGGGACT
CGTCGCCCATTGGTGGAGGTGTACAGTACTGTGCTCGTGGCGAGCAACAG
ATTAGGTTTCTCCCCGAGACGTTCCTACACACTTGGTGCGTGAGCGCGTG
AGCCCACTCTGCCTCCAGCGATCGCCATCTTCAACCTAGGTTGCGACTGG
CAAACGTGCTTGTGGGGTAGGGTGTGGCTGCCGTGGTTTCTTACGGTGTT
TGTGTGTTCCCCCCCCGGGAAGGCAGGGACGGAGGACATCTGCGGTAGAG
GACAGGGGTAGCTTTGGAGGAACCATGGCTTCGGATATGGCAACGAGGCG
GCTGCGGAAGGAGCTGATGGCGATCAAGAGGAACCCCATCGACAATATCG
TTGTAAGCTGATTTGTAGTTTGTTGTTGTTGATGTGGTGGTGGTTTTTGT
CTTCACATATGGACCAGTCTGAGCTCCACCACGATTCATCTCGACCTTCC
CCGCTTTAGGTCTTGCCCCCCTCGACGATTTTATTATGCAAATGCCAACA
TCCATCCATCCATTTTTTATTTTTGTGAGGGATCTTGCTCTCTTCACGAC
TGTACTATGTGCCTACATTGTTTTTTTGCAACAGACGAGTGCAATTTTGT
GTTTGCCCCGAGTTTTCTCTCGCTACGATTGCACTGACTTTATGTATTTA
TTTTTTGGACAGAAGGCGGCTGCTGCTGCATGGCGGACTTTTTTTCTCGG
CGCTTCCCTGTGTATGGTGCTTTATCCCTCCGCTGGACTATCTTGTCTCC
GTCTGTCTCTGTCTGCAGGCGATGCCGATGGACAACAATATCCTGGAGTG
GCACTACGTCATCACCGGTACAAAGGGGTCCCCGTACGAGGGCGGACATT
ACCATGGGAAGCTCAAGTTTCCCCCCGAGGTGAGACAATGGATTCACACA
ACCTTGGGTTTCGGTTCACGTAACCGTGATATGCATCGAGGTTCCCATGC
GCACAAAGCAACAAATACCGGTTCTCAAAGCATCCCATGAAACGCCAGCA
ACATCGCCAGCACGGAAGCGGAATGTCCATTGAACGGACACCCATAATAC
AGCTGGCAAGAGACCTTTGAGCCTCCCGCGGAGAAGACACAGCCACACAG
GTCCTCAACGCATGCCGCAACAAACAAAGCCGGGCAAAATCGCCAGGAAG
ATATGCACTGTCGCGTAAACATTACACTAGTGAGAGACACATAGCGTCGC
ATCACAGCGGCAGTCCGTGAGAACGGAAACCCACGGTTTGTGTCAACCGA
AACTTCCGGTTGCATGAACCGAAACCCACGGTTGTGTGAAAAACCTGACG
ATAGCGCCCGGTGTCCCGGGTACTAGGTTACTTGTTTTGCGGGTGAACAG
ACGAAATTTTTGACAGAAATCCCGGAGGAACCGCCAGTCCAGGACGGGAA
ACGAATCGCCCGGCACGTCCCTGGTCAGACGGCGTTTCTGGTAGGCGCAC
TCTGAAGAATTTTGGCAATGTGGCGTGCATTCCAGTGTGAGGCCACCTGA
AAACGAATCGTGTGTCAGCACCCTTCTCAGCCCTCAAAATGGGTTCCATC
GTCAACACGCAACACCTATTCTGTACAACGAGTGCCTCTCTTGGTTCCTT
GCGTTTCCGGCAAATCACGCATGTTCCTCTTGAGTATGTACCTGACGACC
CGCGACATCTCTGCCGTCGGTTTGTCTGTCTCTCCCTCCCTCCCTCCCTC
TTCCCTTCTCACCCCCTCTCCCTCTCCCCTACCCTCCTTCTCTTCCTCTC
TTCCTGTATGCCGCCTCTCTCTACCCTCCCCCTCTCTACCCCTCTCCGTC
TCTCTCCCCGTCTCCTGCCCCGCCCCGCGCTCGCCCCCCGTCTCTACCCA
CCACCTCCGCAGTACCCGATGAAACCGCCGTCCGTGATGATGATGACCCC
GAACGGCCGGTTCGCCTGCTCGAGAAGGCTCTGCCTGAGCATGTCCGACT
TCCACCCGGAGTCGTGGAACCCCATGTGGAGCGTGAGCACGATCCTCATG
GGGCTCTACAGCTTCATGCTCGACAACGCCGCGACGTTGGGCAGCGTAAC
GAGCTCAACCGCTCAGGTGTGTACTTTTCTCGGCTCTTTTTCAGGACTTT
AAAGGTGTGCTGTGGTGGTGGGGCACTTTTGCTTGACGCGTGAAAATGTA
ACGGAGCTCGAACACCTGTTTTTCGGCAATAGAAACAAAGAAAAAACGCC
CCGAGACCTTGTGTAGCGTCACGAGCAATTTAGCTCTACCGCTCAGGTGT
AGTACTGTAGCGGGTCGGCTCTTTTTCGGAACGGTATTATAGCATGTTTT
GGGTGGTGATGACGTTTATGTTGGCTTGAAAATGTGACGGAGATCGAACA
CGTTTTGTTTCGCACAAAAATATATAGTTACATATATATATTATATAATC
GCCGCGACGTTGGGCAGCGTCACGAGCTCTACTGCTCAGGTGTGGCGTGG
AAACAGTGTTCGTCGATTGCGTAGAGGTGAATGGATGACGGGGAACGAAC
ATGTTTTCGCCGCGACAAACAACCCCGCGACCCTGGGCAGCGTGCGGATT
GCTTCGGCTTCAAAACGGTAGTACAGCGTGGTGATGGTGTTTTCCCCTCA
AGAAAATTCGTTTGAAGAATGTTGTTTTTCTTTTTGTCAGGAGAAACGTC
CATAAAACGGCTTGTTTTTGTTCGGAAGATGTGAAGAATGGCTGAAACGC
GTTGTTGCCTGAAGATGGTCCAATTTTAATGTCAGGAGAAACGTATTGTA
ATGAAGCCTGAAGATGAAACATCCGTGCGTCTGAAGATCGAATTTCTCTG
AAGCCAAGATGAAATCCGAATATTGTGCGGGAATATTGTAATGAAGCCTG
AAGATGAAATTCGAATATTGTAATGAAGCCTGAAGATGAAATTCGAATAT
TGTAATGAAGCCTGAAGATGAAATCGAATATTGTAATGAAGCCTGCCCGA
ATATTGTAATGAAGCCTGAAGATGAAATCCGAATATTGTAATGAAGCCTG
AAGATGAAATCCGAATATTGTAATGAAGCCTGAAGATGAAATCCGAATAT
TGTAATGAAGCCTGAAGATGAAATTCGAATATTGTAATGAAGCCTGAAGA
GGTAAAATTGCAAGAAATATTCATCAAGAAGTGAGAGATCCGTGCATCCA
TCCATGGTTATAATGTCTACAGAACTCCGTGTGCAAAAAAAGGAAATTCG
CCACGAATTCGCCACCGAGTCTTTGGAGGTAAAACTGCAAAGCAACTTaT
GTTTTTGTTTTTGTAGAACGGTTGTTTCTTGATCCGCGTGCAGGCAAAAT
GATAAAATATACATTTTCAGAAAAATACAGAAATCCGTGTGTCGATCTAT
GGTTTCTGTTTTCTCCGTGTCCAGAAAAAGAGGTTCGCCACCGAGTCTTT
GGAGGTAAACTGCAAGAACCCGGCCTTCCGCAAGCTGTTCCCTGACCTGG
TGGAGCTGCACGAGCGACGAAAGTCAGAGGCCATCGCACATCGGAGAGAG
GTGACCGAAAACGTTTCACACAAGTGTCGGCAGCAGGTGTTGTCGGCGTC
GAAGCTAGATAATGATCACGCTGATCTGCTAACCCAAAGGTTCCACACGC
GTGCCGCAGCAGGTGTTGACGGGGGTCGAAGCTAGACAATGATCACGCTG
ATCCGTGTGGTGTTCTTCCTTTTTTTTTCTTTTTTTTCGGTCATCCAGTT
TGTTCTGGACGGCGTGTCTATTGCACCTCTCGGTATCTACAAACCCTCAA
CTTACCATTCGGGGTCACGCAAGGATATTTTTTCTATTCTTGTTCCTTGT
GGAAGGCAGGCTGGTGCTGCTGGGTGTCGATCTCCACCTTTTGTGCAGCT
TGTCGGCGTTTTGAAGACGTCCTTTCGAGCACGATGTTCAAGTGACGTGG
CCAAGTCCGGGAGTGTTTGTTTTACGAGCGTGGATCCGGGGGAGATGAGA
GGAGGAGGGGCCACAGGGCGGAAGGAGGAGGAGGGGAGGAGGAGGGGGGG
GGTCGGGAGGAAAACCGAGAGACAGTGCCTGGACTTTGACGTCTTGTTGT
TTACGCTTTTTCCTCGTATCCCTTGTTTGGCGAACCACCGATGACAACCC
CCCAGGTTGAAACAGAACGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTTTTTGTTTTCACTCTTCTCTTTGATTTCCT
CGTATTCCTTGTTCGGCGAACCTCCGTAACCCTTGATCGCCACACAGGCG
GACGCCAGCGCCTCGGCCGGCTCGGCGACATCCGGGGCAGGGTTAACGAC
GGGAGCAGCAGCAGCAGCGGCGGCGGCGGCTGGGGGAGGGGTACCATCAG
GAGGCAAGGCGGGATCGGGTGCTTCCGCGGGCGGCGGCGGTCGAGCAGCA
GGAGGAGGAGGGGGCGTCGGGACGGGGGCGCCAGGGGCAGCGGGGGGAGA
GTTTTTTTGCTGGGTGTCGGTAGCCGTTGCAATGGGAGTCTGCGGGGCCG
CCTACGTATTAGCGACGGTAGAGTGAATTGACATATTTTCTCTTGTTTTT
GTTGGCGGCGGCGGCGGCGGGATTCATACGCGGGTGCATGACCGAGAACA
CGTAGGAGCATCGGAAAGTGAAAACCGGGGTTACATGCATGGGAGATCTT
TGCCTGTTGTTGTTTCCGCGCCGTGCGGTTCATTTGGTTTGGCGGGAGTG
TCAGCGGAGGGGGGCATATTTCTGTGTGCAGTGGGTATCGTTCCCCACTG
GCCCTGATTTCCGATTGTTGGGCTCACGTGTGTGGGGTTTTGCCGTGTGG
ATGGCTGTGTATGCCGCCGCTGGAGGATTGTGATGTTTTTGCTCCGAGGT
GGTGAGGTGACGGCCGACCGGGGCGAAGGTGCGAACCACTGCTGGACCTG
GGGACCGAAGGTTAAGGGTGGACCCAGAGCACAATCTGTCGGGCATGCGG
CGCGGCGGCACCGGGAGGATTAGGAATCGTGCCGGAAAATGATTTGCGCC
GGGCGTAATCTAAGAAGGTGGTCATAGACGTCATTCGTTGCGGCTTCGAG
GACATACGGCATGACACGGAAGAGGCGAAGAAAGGCAAGGGGGCTTTTTC
TGTGTTGCTGCATATGTGCACACTGCTCGGGTTGTTCTGTGCGAGACTCA
GCTGGGCCCGGAGTGGTTCGGCTTGCCGCGGGGATACCTCGCACATTTTT
GCGAAGTTAAGTATCAAACCAGACTGGGCGGGCGCAATGAATGAACCCTG
ATCACAGTAGCTGCACTGTGGCAATTTTCATTGTATGCATAGGATCTTGA
GACATTCCGCGTGAATGGTAACACCGGGTAACGGAATCGACACGCTCGTC
GCTTTGCGTTTGTGATGCTCTTGACGGCAATCCAATTGTTTCTGCTGCCC
AGAAGAACCGTAAAGAATTATCCTAGGAGATGGCATTGCATGACTTCAGT
CGCACAGAACACCTTCATGAGCGTCGGCAGAGCGGAGAACAAAGTTTTGA
TGCAACCCTTGTGACACGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:518003..526671+

>mRNA_Ecto-sp6_S_contig102.872.1 ID=mRNA_Ecto-sp6_S_contig102.872.1|Name=mRNA_Ecto-sp6_S_contig102.872.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:518003..526671+ (Ectocarpus species6 EcLAC_371)
ATGGCTTCGGATATGGCAACGAGGCGGCTGCGGAAGGAGCTGATGGCGAT
CAAGAGGAACCCCATCGACAATATCGTTGCGATGCCGATGGACAACAATA
TCCTGGAGTGGCACTACGTCATCACCGGTACAAAGGGGTCCCCGTACGAG
GGCGGACATTACCATGGGAAGCTCAAGTTTCCCCCCGAGTACCCGATGAA
ACCGCCGTCCGTGATGATGATGACCCCGAACGGCCGGTTCGCCTGCTCGA
GAAGGCTCTGCCTGAGCATGTCCGACTTCCACCCGGAGTCGTGGAACCCC
ATGTGGAGCGTGAGCACGATCCTCATGGGGCTCTACAGCTTCATGCTCGA
CAACGCCGCGACGTTGGGCAGCGTAACGAGCTCAACCGCTCAGAAAAAGA
GGTTCGCCACCGAGTCTTTGGAGGTAAACTGCAAGAACCCGGCCTTCCGC
AAGCTGTTCCCTGACCTGGTGGAGCTGCACGAGCGACGAAAGTCAGAGGC
CATCGCACATCGGAGAGAGGCGGACGCCAGCGCCTCGGCCGGCTCGGCGA
CATCCGGGGCAGGGTTAACGACGGGAGCAGCAGCAGCAGCGGCGGCGGCG
GCTGGGGGAGGGGTACCATCAGGAGGCAAGGCGGGATCGGGTGCTTCCGC
GGGCGGCGGCGGTCGAGCAGCAGGAGGAGGAGGGGGCGTCGGGACGGGGG
CGCCAGGGGCAGCGGGGGGAGAGTTTTTTTGCTGGGTGTCGGTAGCCGTT
GCAATGGGAGTCTGCGGGGCCGCCTACGTATTAGCGACGGTAGAGTGA
back to top