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Homology
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 145 bits (367), Expect = 9.800e-39 Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 3
Query: 111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
MAITI+RR L+GAEKQIFDFMA+TC PEQWAAWLSAAVVNAAD GKAGLVQKLA +GAEIGVAMHAAALRGDQEVANSLLQNGA I
Sbjct: 1 MAITITRRTLRGAEKQIFDFMADTCIPEQWAAWLSAAVVNAADTGKAGLVQKLATSGAEIGVAMHAAALRGDQEVANSLLQNGALI 86
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI) HSP 1 Score: 123 bits (309), Expect = 3.030e-31 Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3
Query: 171 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASIN 371
MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKL KAGAEIGVAMHAAALRGDQ+VANSLLQNGASIN
Sbjct: 1 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLVKAGAEIGVAMHAAALRGDQDVANSLLQNGASIN 67
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.670e-9 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3
Query: 126 SRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIG-VAMHAAALRGDQEVANSLLQNGASI 368
++ L+G E+++ D M +T P + + WL+A + +A +G GL QKL +AGA+IG VA+H A RG +A LL+NGAS+
Sbjct: 15 AKETLKGEEERVLDLMLDTRCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASV 96
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 3.500e-9 Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query: 111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
+A RRAL+GAE + FD +E T WA L + AA +G L QKL +AGA++G A+HAA G EV +LL++GA +
Sbjct: 17 LANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACV 102
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 124.4 |
| Seed ortholog evalue | 2.6e-26 |
| Seed eggNOG ortholog | 2880.D7G981 |
| Model size | 372 |
| KEGG ko | ko:K21440 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 |
| Exons | 2 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Cds size | 261 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..490318 | 1682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..490318 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig102 490290..490318 + |
| 1682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..494246 | 1682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..494246 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig102 494166..494246 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348738.722896-CDS-Ecto-sp6_S_contig102:494246..494507 | 1682348738.722896-CDS-Ecto-sp6_S_contig102:494246..494507 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 494247..494507 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.867.1 >prot_Ecto-sp6_S_contig102.867.1 ID=prot_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=87bp
MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLV QKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASIN back to topmRNA from alignment at Ecto-sp6_S_contig102:490290..494507+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4218bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371) CGCTTGGAACGTACTGGAAATACAGATAGGTGAGGTGGTGCTTTGTGGCC
GCGCCGTTTCTGGTCTCGCTCTCTTCCTCCAGCTAGCTGCAATCGACCCA
ATTCGCGCCAACCCCCCCAAACTCGAAGCTGCGTTTACAGCAGCAGGTCT
GCGGCGCCTGTCTTCACGCCGCTGTCGCGCTGTGGAAATCAACCTCAACC
GACCCAGTTCTCTGCGACAGTACACACCGCAACGCTCAGTCTAGTGCCTG
TAATATTGTGGATTCGGTGCTTGGATCCCCTTGATAGCGCAGAAGAAGCC
GTTGGTGGCCGCGTAGTCGGCAATGACCGCGAAGAGCGTTAACGCTCCGC
ATTTCGCGTCGCGTAGCCCCCGTGCCTAAAGTTGATGAAATTCAGTTGTT
CGCGTTCGTTCGAGGGCACTGCCGTGAGGGGTCATGTACGATAGATCGAC
ATGCATTCCGCAAAGAACCTTTTCAAAAGTATTGCCAAACCCTGTCAAAA
CTCATGAACATGCACGTGATCATGACCATGGATGGTTTCAGCGGCAACAA
TCGACACAACAGGGCGTATACTTGCACGCTGGTCAAAAAGCGACCCAGCC
ATGGGTACACATAGTTTGGCAGCGTCAAAAGAGCCTTGCTTGTTGGTCAA
CGTTCACATTAGCCCCGTATGACCCGGGTAAATACCTCTGCCATAGCTTC
TTTTCTCCAGAATTATTCCCGAGTTTCGGAAACACACCTTGATCTGACGG
GAAATGGAACCCCTTTCAGGCGAAATCCTCCGCTGCGTCTATTTCCGCAC
CTGCCATACTGTACCCACCACAGGAACTCTTCCTGCTCGCAACAAACACA
GTGCATGACACAGAACATAATTCCGTTGGGCAAGGAAAGCTGCATGTTGC
GGTGTATACACGATACGAGTCACCCTCAGAATGCGACCGATCCAGCGTAG
TTGATAGCAGTGGGGTTTCAAAGAAATGTATGTGTGGGTGTGTGGCGGCG
AGCTCATGGTTGCAGAAACGCGGGAGGACACAAACACACGCCGAGCGAAT
TATCATGGAAGGAGCCAGTAGTGCACAATTGGCCCGGCTAGTCATCCTAC
GCCATTAGCCATCGATGTCGGCCCTGCTTTTAGCACTCCCCGCAAGTCCT
ATCGTCAGGGTGCAGAAGGCAACTCATTTAGCCTCCGGTCCTCCAGCACA
ATTCCGTGTGTTGCAGCGTTGCAGCGCGTTCAGTCTCTGTTTTTGTAGGG
GGTAGTACGCTCACCCCCATCCCAATTCCGTGTGTTGCAGCGTTGCAGCG
CGTTCAGTCTCTGTTTTTGTAGGGGGTAGTACGCTCACCCCCATCCGCGA
CGAATCGCTCGTGTGTGTGTATTTCTTGTTAGCATCGACCGCGCTAACCA
GCTGACCAATGAAAATGTATGTTGTGTCCTTTCGCCCGCCACTACGGGCT
CGCTGCCACACACCGGCGCATGCATCCTTTAAGGTCGTGACCAATGAAAA
TGTATATGTGTGTCCTTTCGCCTCTCCGCCACTACGGGCTCGCTGCCACA
CACCGGTGCATACATCCTTATAAGTCGACGTTACAACCCATATATTCCAT
ATACCCGTGCTGGGTCGGCCGCGTCCTGAGCGTAACTCGTAGCTCGCGTT
ACCCGCATCTGTACATATTTATCGGCTGCTGTGCTGATCGCGCTGTGTAC
CGCTGATTGTTTGTTTCGATGGGGAAGAGTTCATGGTTGGTGTCCTACGG
TAGGAGCAGAAATGCATTCCTGCGGAGGAAATGGCCGATGGAAGGGGTTT
ACTTCCCGTCAAATCAGGGCACGTTTCCGAAACCGGCGTACATTTCGGGA
GAAACGTAGCTGTGGCTGGGTGTACATCGGGCAGTTTTGGACACGGCAAG
GTGAAAGTGGACGTTGGCCAATCCGCATGGCTCCTTTGACTCAGCCAAGT
AAGTGTGTACCCGGCTGAATCGTTTTTTGACCAGGATACCCTGCGGTGTA
GATTGCTCTCCCCCCAATTGAGATCCGGATAAGCCCAGTTGGGTCGCGAT
CTCGTGCTCTTCGCATACGTATCGAGTTGCCATCGAAAGTAGAGGGGAGT
CTCAATCAAAAAATTTCTTCCGCAAAGCGGTGTCGATGTGTGTATGTGCG
TGCTTGTCCCATCTATTCTGGCGCCAGCGTCAACACTTTTTTAGAGTACA
TGTTTGATGTGTGACACACAAGAGGACGGTCACACAGGAGGTTTTGTACC
AGTAGGGCGGGGTAAAGAGCCGTGGGGTGCGAGTCAATGCCTGCAGTCCA
CCGGCGATGCTGTTCGAGACGCGCTGCTTCTAGGCCACCACACGCGCTCG
GAGACTTCCGCAGTTCATGCATACGTATCTGGAATATCCAAGCAGGTGTT
CAAGGTTGTGCATCCGCTCCCCCCTGGGTCAAGTGCTACACCAGAGGCGG
AGGAGCAAACACACACACCGTGACACACTTGCCCCTGCTACAGCAGCACC
GCCAGACCATCGGCACCTAACAGCACTGCCGCCGGCATAAATTAACGACG
GTGGCGGACACGAAAGTACATGATAGAGCCCATCGGGCAGCGTGGTGTGG
AAAGTAGCAGGAGCGGTTCAAATAGAGCACGCTCTCACCCTTTTTTGTGG
TGGAATTTTTCTAATCAACTGACTCGTGTCCTCAATGTTTGGGTTGCTGG
AGGCGGCGTTATTTAATTGCTTGCCTACTTGCCCGACCTATGGCTGTCCG
ACGAAGACATCATATCAATCGTTCTGAGTCTCGTTTGGCGACTCCTTCAA
CAACACCAACGCCCCAACTGCGCTCTGTTGCAGCTGCTGCTCTCCCAAAG
ACTCCCAGCAATCGTACCGTCGGCCACCATTGTGAGATTTCCCAACGGCA
GGACTGCTTGTTGTGTAGCCAGAGAGCGGGCACCAGGTCTGCTGTTACTG
CTGTGCTTTCCCACGTACGGAAGGGATTGGTCCTCATAGGACGGGTGTGT
TTCTGTGGATGTGCGCAACGTATCTGTGTTACCTCTGTTTCTCCGTTTGT
TGAAATAGCGTGGGCGAATTTTCCGCTTCTGTGTTCATCCTTTCAACTCC
CGGGGTTAATTGTGAGGTATCTCCTACGGATTGCCGGGACAAATGCTGGT
GTAGCACGGCCACATCTTGTCAGAGTACCACCAAACCGGTGTGACGAAGT
GTGCCCTATTTTCTTCCTCTTCGGAAGCCAACAGGTCGTCAATCGGCGTT
CTATCGGTCTTTTAGGCTTCGCGGAATTCTCGCGGAAATCACACGAGACC
CCCTTCATCGCTTTGGATCAGGCCGATATTTCGAGCCGTTTTTTTTATTT
TTTCCTCCTGGGATGAAGGGACAAATGGTGGCGGCTTCGCCGTTCCACGG
CAATTAATCATGTTTTGTTGGTTTCTTTCCCTCCCTCCCCACCGCAGTTC
TTGCCTTAGTTTAAATCGCGAGACGGGTTCCTTCCCTCGTTGACCGTCAT
GTGAATCACAACAGCCAGTGCAATAGATCGCCAGCAGGAAGTCGATGTTT
CGCATTCAAAGAGTGATCTGGTCCACTCTGAGAAGGAAAATGAATGTCTT
GATGCTCGCCGATGTTTGCAGAGTTCGCCAGTGGAGCGAGAGTTGCTGTT
GGCCAAAGCACGGTATGCATACTCCTCGCCCAACAGCCTCCCAGGTTGCA
TGTGTGCCTGTTTTTCGTTAGCCACATTGGACCAATATGCACTTGAACGT
ATGCCATGGGGTGCAGCACCTTTGCTCGAGAAAGTAGCAGGCGACCAGGA
CCGAATTATGACATTTGTTAGCTTAAACAATCACTGTGTCTGAGGCGCAT
TGCGTGTGTTGTGTTGTGCATTTCAGGCTCCTCTACATCCTGCCACCCCC
ACCCCATCGCGGCCGACCGCGGGACAACGTAAACCTCGCCGGTAGAGACT
TCCAAGAATGGCGATCACGATCTCCCGCCGCGCCCTTCAGGGGGCAGAGA
AGCAGATATTCGACTTCATGGCAGAGACCTGCACACCCGAGCAATGGGCG
GCCTGGCTCAGCGCTGCTGTGGTGAACGCCGCTGACAAAGGAAAGGCAGG
TCTCGTACAGAAGCTAGCGAAGGCAGGAGCAGAGATCGGGGTTGCAATGC
ACGCGGCGGCGTTGCGCGGCGATCAGGAGGTCGCCAACAGTCTGCTGCAG
AACGGAGCATCAATCAAC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig102:490290..494507+ >mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371) ATGGCGATCACGATCTCCCGCCGCGCCCTTCAGGGGGCAGAGAAGCAGAT ATTCGACTTCATGGCAGAGACCTGCACACCCGAGCAATGGGCGGCCTGGC TCAGCGCTGCTGTGGTGAACGCCGCTGACAAAGGAAAGGCAGGTCTCGTA CAGAAGCTAGCGAAGGCAGGAGCAGAGATCGGGGTTGCAATGCACGCGGC GGCGTTGCGCGGCGATCAGGAGGTCGCCAACAGTCTGCTGCAGAACGGAG CATCAATCAAC back to top
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