mRNA_Ecto-sp6_S_contig102.867.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.867.1
Unique NamemRNA_Ecto-sp6_S_contig102.867.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: A0A6H5JBC2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.800e-39
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
            MAITI+RR L+GAEKQIFDFMA+TC PEQWAAWLSAAVVNAAD GKAGLVQKLA +GAEIGVAMHAAALRGDQEVANSLLQNGA I
Sbjct:    1 MAITITRRTLRGAEKQIFDFMADTCIPEQWAAWLSAAVVNAADTGKAGLVQKLATSGAEIGVAMHAAALRGDQEVANSLLQNGALI 86          
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.030e-31
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  171 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASIN 371
            MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKL KAGAEIGVAMHAAALRGDQ+VANSLLQNGASIN
Sbjct:    1 MAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLVKAGAEIGVAMHAAALRGDQDVANSLLQNGASIN 67          
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.670e-9
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  126 SRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIG-VAMHAAALRGDQEVANSLLQNGASI 368
            ++  L+G E+++ D M +T  P + + WL+A + +A  +G  GL QKL +AGA+IG VA+H A  RG   +A  LL+NGAS+
Sbjct:   15 AKETLKGEEERVLDLMLDTRCPHEMSEWLAAPLESAVARGDEGLAQKLVQAGAKIGGVALHEAVRRGHIAIAELLLENGASV 96          
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.500e-9
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  111 MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLVQKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASI 368
            +A    RRAL+GAE + FD  +E  T   WA  L   +  AA +G   L QKL +AGA++G A+HAA   G  EV  +LL++GA +
Sbjct:   17 LANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACV 102          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBC2_9PHAE9.800e-3989.53Reverse transcriptase domain-containing protein n=... [more]
D7G981_ECTSI3.030e-3197.01Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G137_ECTSI2.670e-942.68Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LL12_ECTSI3.500e-943.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:490290..494507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score124.4
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D7G981
Model size372
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size261
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..4903181682348738.6944554-UTR-Ecto-sp6_S_contig102:490289..490318Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 490290..490318 +
1682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..4942461682348738.7101202-UTR-Ecto-sp6_S_contig102:494165..494246Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 494166..494246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.722896-CDS-Ecto-sp6_S_contig102:494246..4945071682348738.722896-CDS-Ecto-sp6_S_contig102:494246..494507Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 494247..494507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.867.1prot_Ecto-sp6_S_contig102.867.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 494247..494507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.867.1

>prot_Ecto-sp6_S_contig102.867.1 ID=prot_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=87bp
MAITISRRALQGAEKQIFDFMAETCTPEQWAAWLSAAVVNAADKGKAGLV
QKLAKAGAEIGVAMHAAALRGDQEVANSLLQNGASIN
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mRNA from alignment at Ecto-sp6_S_contig102:490290..494507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4218bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371)
CGCTTGGAACGTACTGGAAATACAGATAGGTGAGGTGGTGCTTTGTGGCC GCGCCGTTTCTGGTCTCGCTCTCTTCCTCCAGCTAGCTGCAATCGACCCA ATTCGCGCCAACCCCCCCAAACTCGAAGCTGCGTTTACAGCAGCAGGTCT GCGGCGCCTGTCTTCACGCCGCTGTCGCGCTGTGGAAATCAACCTCAACC GACCCAGTTCTCTGCGACAGTACACACCGCAACGCTCAGTCTAGTGCCTG TAATATTGTGGATTCGGTGCTTGGATCCCCTTGATAGCGCAGAAGAAGCC GTTGGTGGCCGCGTAGTCGGCAATGACCGCGAAGAGCGTTAACGCTCCGC ATTTCGCGTCGCGTAGCCCCCGTGCCTAAAGTTGATGAAATTCAGTTGTT CGCGTTCGTTCGAGGGCACTGCCGTGAGGGGTCATGTACGATAGATCGAC ATGCATTCCGCAAAGAACCTTTTCAAAAGTATTGCCAAACCCTGTCAAAA CTCATGAACATGCACGTGATCATGACCATGGATGGTTTCAGCGGCAACAA TCGACACAACAGGGCGTATACTTGCACGCTGGTCAAAAAGCGACCCAGCC ATGGGTACACATAGTTTGGCAGCGTCAAAAGAGCCTTGCTTGTTGGTCAA CGTTCACATTAGCCCCGTATGACCCGGGTAAATACCTCTGCCATAGCTTC TTTTCTCCAGAATTATTCCCGAGTTTCGGAAACACACCTTGATCTGACGG GAAATGGAACCCCTTTCAGGCGAAATCCTCCGCTGCGTCTATTTCCGCAC CTGCCATACTGTACCCACCACAGGAACTCTTCCTGCTCGCAACAAACACA GTGCATGACACAGAACATAATTCCGTTGGGCAAGGAAAGCTGCATGTTGC GGTGTATACACGATACGAGTCACCCTCAGAATGCGACCGATCCAGCGTAG TTGATAGCAGTGGGGTTTCAAAGAAATGTATGTGTGGGTGTGTGGCGGCG AGCTCATGGTTGCAGAAACGCGGGAGGACACAAACACACGCCGAGCGAAT TATCATGGAAGGAGCCAGTAGTGCACAATTGGCCCGGCTAGTCATCCTAC GCCATTAGCCATCGATGTCGGCCCTGCTTTTAGCACTCCCCGCAAGTCCT ATCGTCAGGGTGCAGAAGGCAACTCATTTAGCCTCCGGTCCTCCAGCACA ATTCCGTGTGTTGCAGCGTTGCAGCGCGTTCAGTCTCTGTTTTTGTAGGG GGTAGTACGCTCACCCCCATCCCAATTCCGTGTGTTGCAGCGTTGCAGCG CGTTCAGTCTCTGTTTTTGTAGGGGGTAGTACGCTCACCCCCATCCGCGA CGAATCGCTCGTGTGTGTGTATTTCTTGTTAGCATCGACCGCGCTAACCA GCTGACCAATGAAAATGTATGTTGTGTCCTTTCGCCCGCCACTACGGGCT CGCTGCCACACACCGGCGCATGCATCCTTTAAGGTCGTGACCAATGAAAA TGTATATGTGTGTCCTTTCGCCTCTCCGCCACTACGGGCTCGCTGCCACA CACCGGTGCATACATCCTTATAAGTCGACGTTACAACCCATATATTCCAT ATACCCGTGCTGGGTCGGCCGCGTCCTGAGCGTAACTCGTAGCTCGCGTT ACCCGCATCTGTACATATTTATCGGCTGCTGTGCTGATCGCGCTGTGTAC CGCTGATTGTTTGTTTCGATGGGGAAGAGTTCATGGTTGGTGTCCTACGG TAGGAGCAGAAATGCATTCCTGCGGAGGAAATGGCCGATGGAAGGGGTTT ACTTCCCGTCAAATCAGGGCACGTTTCCGAAACCGGCGTACATTTCGGGA GAAACGTAGCTGTGGCTGGGTGTACATCGGGCAGTTTTGGACACGGCAAG GTGAAAGTGGACGTTGGCCAATCCGCATGGCTCCTTTGACTCAGCCAAGT AAGTGTGTACCCGGCTGAATCGTTTTTTGACCAGGATACCCTGCGGTGTA GATTGCTCTCCCCCCAATTGAGATCCGGATAAGCCCAGTTGGGTCGCGAT CTCGTGCTCTTCGCATACGTATCGAGTTGCCATCGAAAGTAGAGGGGAGT CTCAATCAAAAAATTTCTTCCGCAAAGCGGTGTCGATGTGTGTATGTGCG TGCTTGTCCCATCTATTCTGGCGCCAGCGTCAACACTTTTTTAGAGTACA TGTTTGATGTGTGACACACAAGAGGACGGTCACACAGGAGGTTTTGTACC AGTAGGGCGGGGTAAAGAGCCGTGGGGTGCGAGTCAATGCCTGCAGTCCA CCGGCGATGCTGTTCGAGACGCGCTGCTTCTAGGCCACCACACGCGCTCG GAGACTTCCGCAGTTCATGCATACGTATCTGGAATATCCAAGCAGGTGTT CAAGGTTGTGCATCCGCTCCCCCCTGGGTCAAGTGCTACACCAGAGGCGG AGGAGCAAACACACACACCGTGACACACTTGCCCCTGCTACAGCAGCACC GCCAGACCATCGGCACCTAACAGCACTGCCGCCGGCATAAATTAACGACG GTGGCGGACACGAAAGTACATGATAGAGCCCATCGGGCAGCGTGGTGTGG AAAGTAGCAGGAGCGGTTCAAATAGAGCACGCTCTCACCCTTTTTTGTGG TGGAATTTTTCTAATCAACTGACTCGTGTCCTCAATGTTTGGGTTGCTGG AGGCGGCGTTATTTAATTGCTTGCCTACTTGCCCGACCTATGGCTGTCCG ACGAAGACATCATATCAATCGTTCTGAGTCTCGTTTGGCGACTCCTTCAA CAACACCAACGCCCCAACTGCGCTCTGTTGCAGCTGCTGCTCTCCCAAAG ACTCCCAGCAATCGTACCGTCGGCCACCATTGTGAGATTTCCCAACGGCA GGACTGCTTGTTGTGTAGCCAGAGAGCGGGCACCAGGTCTGCTGTTACTG CTGTGCTTTCCCACGTACGGAAGGGATTGGTCCTCATAGGACGGGTGTGT TTCTGTGGATGTGCGCAACGTATCTGTGTTACCTCTGTTTCTCCGTTTGT TGAAATAGCGTGGGCGAATTTTCCGCTTCTGTGTTCATCCTTTCAACTCC CGGGGTTAATTGTGAGGTATCTCCTACGGATTGCCGGGACAAATGCTGGT GTAGCACGGCCACATCTTGTCAGAGTACCACCAAACCGGTGTGACGAAGT GTGCCCTATTTTCTTCCTCTTCGGAAGCCAACAGGTCGTCAATCGGCGTT CTATCGGTCTTTTAGGCTTCGCGGAATTCTCGCGGAAATCACACGAGACC CCCTTCATCGCTTTGGATCAGGCCGATATTTCGAGCCGTTTTTTTTATTT TTTCCTCCTGGGATGAAGGGACAAATGGTGGCGGCTTCGCCGTTCCACGG CAATTAATCATGTTTTGTTGGTTTCTTTCCCTCCCTCCCCACCGCAGTTC TTGCCTTAGTTTAAATCGCGAGACGGGTTCCTTCCCTCGTTGACCGTCAT GTGAATCACAACAGCCAGTGCAATAGATCGCCAGCAGGAAGTCGATGTTT CGCATTCAAAGAGTGATCTGGTCCACTCTGAGAAGGAAAATGAATGTCTT GATGCTCGCCGATGTTTGCAGAGTTCGCCAGTGGAGCGAGAGTTGCTGTT GGCCAAAGCACGGTATGCATACTCCTCGCCCAACAGCCTCCCAGGTTGCA TGTGTGCCTGTTTTTCGTTAGCCACATTGGACCAATATGCACTTGAACGT ATGCCATGGGGTGCAGCACCTTTGCTCGAGAAAGTAGCAGGCGACCAGGA CCGAATTATGACATTTGTTAGCTTAAACAATCACTGTGTCTGAGGCGCAT TGCGTGTGTTGTGTTGTGCATTTCAGGCTCCTCTACATCCTGCCACCCCC ACCCCATCGCGGCCGACCGCGGGACAACGTAAACCTCGCCGGTAGAGACT TCCAAGAATGGCGATCACGATCTCCCGCCGCGCCCTTCAGGGGGCAGAGA AGCAGATATTCGACTTCATGGCAGAGACCTGCACACCCGAGCAATGGGCG GCCTGGCTCAGCGCTGCTGTGGTGAACGCCGCTGACAAAGGAAAGGCAGG TCTCGTACAGAAGCTAGCGAAGGCAGGAGCAGAGATCGGGGTTGCAATGC ACGCGGCGGCGTTGCGCGGCGATCAGGAGGTCGCCAACAGTCTGCTGCAG AACGGAGCATCAATCAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:490290..494507+

>mRNA_Ecto-sp6_S_contig102.867.1 ID=mRNA_Ecto-sp6_S_contig102.867.1|Name=mRNA_Ecto-sp6_S_contig102.867.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:490290..494507+ (Ectocarpus species6 EcLAC_371)
ATGGCGATCACGATCTCCCGCCGCGCCCTTCAGGGGGCAGAGAAGCAGAT
ATTCGACTTCATGGCAGAGACCTGCACACCCGAGCAATGGGCGGCCTGGC
TCAGCGCTGCTGTGGTGAACGCCGCTGACAAAGGAAAGGCAGGTCTCGTA
CAGAAGCTAGCGAAGGCAGGAGCAGAGATCGGGGTTGCAATGCACGCGGC
GGCGTTGCGCGGCGATCAGGAGGTCGCCAACAGTCTGCTGCAGAACGGAG
CATCAATCAAC
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