mRNA_Ecto-sp6_S_contig101.822.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.822.1
Unique NamemRNA_Ecto-sp6_S_contig101.822.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match: A0A6H5JJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF2_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.520e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2 
Query:    3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
            VGRS G VAIE KVRI RVPS+LD E  TRRVD+ FH
Sbjct:   67 VGRSSGAVAIEEKVRIPRVPSTLDPERVTRRVDSPFH 103
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BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match: D8LMZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ0_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.470e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2 
Query:    3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
            VGRS G VAIE KVRI RVPS+LD EG TRRVD+  H
Sbjct:   66 VGRSNGAVAIEEKVRIPRVPSALDPEGITRRVDSPLH 102
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BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match: D8LMZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.620e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2 
Query:    3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
            VGRS G VAIE KVRI RVPS+LD EG TRRVD+  H
Sbjct:   66 VGRSSGAVAIEEKVRIPRVPSALDPEGITRRVDSPLH 102
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match: A0A6H5JPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = -2 
Query:    3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
            VGRS G VAIE K+RI RVPS+LD EG TRRVD+  H
Sbjct:   68 VGRSSGAVAIEEKLRIPRVPSALDPEGITRRVDSPLH 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JJF2_9PHAE3.520e-772.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMZ0_ECTSI8.470e-772.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMZ8_ECTSI8.620e-772.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPB1_9PHAE1.320e-670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:591970..592146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001120.1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.7367904-CDS-Ecto-sp6_S_contig101:591969..5921461682348734.7367904-CDS-Ecto-sp6_S_contig101:591969..592146Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 591970..592146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.822.1prot_Ecto-sp6_S_contig101.822.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 591970..592146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.822.1

>prot_Ecto-sp6_S_contig101.822.1 ID=prot_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=59bp
MWKKASTLRVNPSESSEEGTRRMRTFPSMATLPPLRPTNASHGILPGNIR
VEAHIFEP*
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mRNA from alignment at Ecto-sp6_S_contig101:591970..592146-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.822.1 ID=mRNA_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:591970..592146- (Ectocarpus species6 EcLAC_371)
ATGTGGAAAAAAGCGTCCACCCTGCGGGTAAACCCCTCGGAATCCAGCGA
AGAAGGAACCCGCCGGATGCGCACCTTCCCCTCGATGGCGACATTGCCAC
CACTGCGCCCAACCAATGCCAGCCATGGGATTCTCCCAGGAAACATACGC
GTGGAAGCGCATATTTTTGAGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:591970..592146-

>mRNA_Ecto-sp6_S_contig101.822.1 ID=mRNA_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:591970..592146- (Ectocarpus species6 EcLAC_371)
ATGTGGAAAAAAGCGTCCACCCTGCGGGTAAACCCCTCGGAATCCAGCGA
AGAAGGAACCCGCCGGATGCGCACCTTCCCCTCGATGGCGACATTGCCAC
CACTGCGCCCAACCAATGCCAGCCATGGGATTCTCCCAGGAAACATACGC
GTGGAAGCGCATATTTTTGAGCCTTGA
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