mRNA_Ecto-sp6_S_contig101.815.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.815.1
Unique NamemRNA_Ecto-sp6_S_contig101.815.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 3.740e-71
Identity = 168/177 (94.92%), Postives = 171/177 (96.61%), Query Frame = 1
Query:  247 MVIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLSSSDRVVEALQHRPKTTVVLGDAGDYSRRRQEDPLTSSVDR 777
            MVIARSLKDAARLGSATTSLLLR+SEDLVCQNLMCAKIGEACVCRLAVHLSRLGKL+ELDVAENDLGVLPEPVFELPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGL SSDRVVEALQHRP+TTVV GDAGDYSRRRQED  TSS DR
Sbjct:    1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGDAGDYSRRRQEDASTSSADR 177          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.030e-19
Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483
            +IA+SL+DAA   S+   L+LRKS+DLVC+NLMC ++GEACVC+L++ L RL +L ELDV+EN L +LP  +F+L  L
Sbjct:    1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKL 78          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-17
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +IA+SL+DAA   SA   L+LRKSEDL+C NLMC ++GEACVC+L+V L RL +L  LDV+ N+L  LP  +F L
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSL 75          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A1V9Z9Y8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9Y8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.650e-17
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +IA+SL++AA   +A   LLLRKSEDLVC+NLMC ++GEACVC+L++ L RL +L  LDV+ N LG LP  V  L
Sbjct:    1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAAL 75          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC)

HSP 1 Score: 87.8 bits (216), Expect = 1.240e-15
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +IA+SL+DAA   SA   L+LRKSEDL+C NLMC ++GEACVC+L+V L RL +L  LDV+ N+L  LP  +F L
Sbjct:  382 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSL 456          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.220e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +A S + AA+ G+AT  L+L KS+DLVC+NLMC +IG AC CRLA  L+ + KL  LD++ N+L  +P+ VF L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSL 78          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.640e-15
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483
            +I RS++DAA    A   LLLR+SEDL+C+NLMC ++GEAC+CR ++ L +L +L +LDV+ N+L  LP  +F+LP L
Sbjct:  332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLPRL 409          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A484E5V5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5V5_BRELC)

HSP 1 Score: 80.5 bits (197), Expect = 9.670e-15
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483
            IA  L+D AR GS  T L L KS DLVC+ LMC  +G+AC CRLA+ L R+  LR LD++ N L +LP+ V+ L +L
Sbjct:    6 IATCLRDVARHGSCITELQLSKSSDLVCRQLMCEHVGDACSCRLALALERVPHLRHLDLSRNQLRMLPDAVYALQSL 82          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A662YEN8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.570e-14
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +ARS +D AR+G+A +SL L +S DLVC+NLMC  +G+AC CRL++ L R+ +L++LD++ N L  LP   F L
Sbjct:   36 VARSFRDVARVGAAVSSLQLPQSPDLVCRNLMCEHVGDACACRLSLVLERVPQLQQLDLSSNALRALPASTFSL 109          
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.750e-14
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474
            +A S +D A+ G+    L+L+KS+DLVC+NLMC KIG AC CRLA  L+ + KL  LD++ N L  +PE VF L
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGL 78          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMZ4_ECTSI3.740e-7194.92Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A1V9ZV51_9STRA5.030e-1956.41Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
T0QH27_SAPDV1.100e-1757.33Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z9Y8_9STRA6.650e-1757.33Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CF62_SAPPC1.240e-1557.33Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024GQG6_9STRA3.220e-1551.35Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A485L6B7_9STRA3.640e-1551.28Aste57867_16664 protein n=1 Tax=Aphanomyces stella... [more]
A0A484E5V5_BRELC9.670e-1551.95Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A662YEN8_9STRA1.570e-1450.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
F0WI42_9STRA1.750e-1451.35Uncharacterized protein AlNc14C107G6249 n=1 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:501127..502543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score227.6
Seed ortholog evalue4.5e-57
Seed eggNOG ortholog2880.D8LMZ4
Model size939
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_001180.1
Cds size534
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.2207751-UTR-Ecto-sp6_S_contig101:501126..5012851682348734.2207751-UTR-Ecto-sp6_S_contig101:501126..501285Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 501127..501285 -
1682348734.2440798-UTR-Ecto-sp6_S_contig101:502297..5025431682348734.2440798-UTR-Ecto-sp6_S_contig101:502297..502543Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 502298..502543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.229512-CDS-Ecto-sp6_S_contig101:501285..5015631682348734.229512-CDS-Ecto-sp6_S_contig101:501285..501563Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 501286..501563 -
1682348734.2369423-CDS-Ecto-sp6_S_contig101:502041..5022971682348734.2369423-CDS-Ecto-sp6_S_contig101:502041..502297Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 502042..502297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.815.1prot_Ecto-sp6_S_contig101.815.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 501286..502297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.815.1

>prot_Ecto-sp6_S_contig101.815.1 ID=prot_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=178bp
MVIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHL
SRLGKLRELDVAENDLGVLPEPVFELPALEHLDVSGNGLKDLPASVAALS
SLRTLRLSDNALTALPKELALLPLLTEVHVDGNSGLSSSDRVVEALQHRP
KTTVVLGDAGDYSRRRQEDPLTSSVDR*
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mRNA from alignment at Ecto-sp6_S_contig101:501127..502543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.815.1 ID=mRNA_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:501127..502543- (Ectocarpus species6 EcLAC_371)
CCCTATTACTCTTTTTTAGAAAGTAAACATTTTTTACTCTATTGTACAAA TGCCCCCCTCTGTCTGTGCTCACGTTCTCACCAATCGGGTGTGTGGCGTT CAACATTACCCCCGCTGCTGCGAAAAATGGCTATAGTCACGGGACCAGGG GTCAATGGGGCTGACGGATCAGGTCTGTCTGTCTCCCGCACTTCTCTGTC GCTGTCTACACGCAGGAGTTGCAAGTATCTCTCTCCCTAGTGGGCAATGG TTATCGCGCGGAGTCTCAAGGACGCGGCGCGGCTAGGGAGCGCGACGACC TCTCTGTTGCTGAGGAAGAGCGAGGACCTGGTATGCCAGAACCTCATGTG CGCCAAGATAGGCGAGGCTTGCGTCTGTCGGCTGGCCGTCCACTTGTCCC GGCTGGGCAAGCTGAGGGAGCTCGACGTTGCTGAGAACGACCTCGGCGTC CTGCCCGAACCAGTGTTCGAGTTGCCGGCCTTGGAGCATCTGGACGTCAG TGGTGAGTGCTGATTTTTGCCTTGAGTGTTGGCGATGTTGATGGTGCATG GGCTTGTGTTGTTGGCGTATATCTCCCAGACCTGCAATGTGCTTTCTCTG ATGTTTTCTGCTGCTGTCGCAACAGCGAACCCCACACGAGAGTGCAGTTG AAGGAGTGTGTCCGCCCCTCTGCGGAAAGCAACCATCCGTCATGAGACTT TCCGGCGGACTAATGCAAACCGGCTGGGTGTTTCCATCCACTGGATTATC CGCTGACGGGGGCAAATCATGTCGGCAGCCCGAGAGAGAAGGGAAGGGTG GGGGTTTCCCCACGGTAATCAAATCGAGGTGTACTCTGCACGCCCGTACA AATAGGTCTGCTTTAGCCAACCCCGTTGCCGCTGCTCTTGGGGTTGTCCG CTCCTTTTCACAATCACCGTCGACCTTAACCCCTCCCGCCTCGAACCTTT CCGGGGCTCTCCTGCTATCGCGGTTAACAGGGAACGGTCTCAAAGACCTG CCGGCGAGCGTAGCCGCTCTCTCCAGCCTTCGTACTCTCCGGCTGTCGGA CAACGCCCTCACGGCCCTGCCGAAAGAGCTGGCCTTGCTCCCGTTGCTGA CAGAGGTGCACGTAGACGGCAACAGCGGGCTTAGCAGCAGCGACAGAGTG GTCGAGGCGTTGCAGCACAGACCAAAAACGACCGTCGTTCTCGGCGACGC AGGAGATTACTCTCGAAGACGTCAAGAGGACCCTTTGACCTCCTCGGTGG ATAGATAGCGGCGGCCCCGGACACGAGAAATCTCGTTGTCCCTCGAAGGG AAATGGTTTCTGGTTTTGGTTATGGGCTGATCCGAGGAAGCCTTTCCATC GCTTTAGATGCCCTGGTACAAGTCTACGGTGATTCGTTGTTCCCGATTTT CATAAGTTTTGAAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:501127..502543-

>mRNA_Ecto-sp6_S_contig101.815.1 ID=mRNA_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:501127..502543- (Ectocarpus species6 EcLAC_371)
ATGGTTATCGCGCGGAGTCTCAAGGACGCGGCGCGGCTAGGGAGCGCGAC
GACCTCTCTGTTGCTGAGGAAGAGCGAGGACCTGGTATGCCAGAACCTCA
TGTGCGCCAAGATAGGCGAGGCTTGCGTCTGTCGGCTGGCCGTCCACTTG
TCCCGGCTGGGCAAGCTGAGGGAGCTCGACGTTGCTGAGAACGACCTCGG
CGTCCTGCCCGAACCAGTGTTCGAGTTGCCGGCCTTGGAGCATCTGGACG
TCAGTGGGAACGGTCTCAAAGACCTGCCGGCGAGCGTAGCCGCTCTCTCC
AGCCTTCGTACTCTCCGGCTGTCGGACAACGCCCTCACGGCCCTGCCGAA
AGAGCTGGCCTTGCTCCCGTTGCTGACAGAGGTGCACGTAGACGGCAACA
GCGGGCTTAGCAGCAGCGACAGAGTGGTCGAGGCGTTGCAGCACAGACCA
AAAACGACCGTCGTTCTCGGCGACGCAGGAGATTACTCTCGAAGACGTCA
AGAGGACCCTTTGACCTCCTCGGTGGATAGATAG
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