mRNA_Ecto-sp6_S_contig101.774.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.774.1
Unique NamemRNA_Ecto-sp6_S_contig101.774.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.390e-72
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:    1 EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 366
            EQLSLWGVQPPPGLARQYATRHGERGGGM NMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL
Sbjct:  133 EQLSLWGVQPPPGLARQYATRHGERGGGM-NMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 253
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BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 5.880e-71
Identity = 117/122 (95.90%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:    1 EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 366
            EQLS+WGVQPPPGLARQYATRHGERGGGM NMMTMNDFMESD+ALNQMLRS+TPQGAGGAGAPPLVRVVRGTGG DTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL
Sbjct: 2182 EQLSMWGVQPPPGLARQYATRHGERGGGM-NMMTMNDFMESDSALNQMLRSLTPQGAGGAGAPPLVRVVRGTGGGDTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLL 2302
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3W3_ECTSI1.390e-7299.18HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L6M1_9PHAE5.880e-7195.90UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:14637..16727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score243.4
Seed ortholog evalue5.4e-62
Seed eggNOG ortholog2880.D7G3W3
Preferred nameUPL1
Model size368
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionDomain of unknown function DUF4414
Ec32 orthologEc-00_007160.3
EC2.3.2.26
Cds size366
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.4008002-CDS-Ecto-sp6_S_contig101:14636..147031682348728.4008002-CDS-Ecto-sp6_S_contig101:14636..14703Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 14637..14703 -
1682348728.4093847-CDS-Ecto-sp6_S_contig101:15175..152311682348728.4093847-CDS-Ecto-sp6_S_contig101:15175..15231Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 15176..15231 -
1682348728.416562-CDS-Ecto-sp6_S_contig101:15972..161281682348728.416562-CDS-Ecto-sp6_S_contig101:15972..16128Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 15973..16128 -
1682348728.42407-CDS-Ecto-sp6_S_contig101:16640..167271682348728.42407-CDS-Ecto-sp6_S_contig101:16640..16727Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 16641..16727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.774.1prot_Ecto-sp6_S_contig101.774.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 14637..16727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.774.1

>prot_Ecto-sp6_S_contig101.774.1 ID=prot_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=122bp
EQLSLWGVQPPPGLARQYATRHGERGGGMQNMMTMNDFMESDAALNQMLR
SVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTR
LFPDGPSAATQAHAAPVVHPLL
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mRNA from alignment at Ecto-sp6_S_contig101:14637..16727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.774.1 ID=mRNA_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2091bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:14637..16727- (Ectocarpus species6 EcLAC_371)
GAGCAGCTGTCTCTGTGGGGGGTGCAGCCGCCGCCGGGCCTGGCGAGACA
GTACGCGACGCGGCACGGGGAGCGTGGGGGAGGAATGGTGGGTCTCTACT
TTTTTTTTTTTTTTTTTTTTTTTGGCGAACGTTGCCGGTTTCGTGTTTTT
GTTCCGAGGGGAGCGCGGGGAGGGGATGGTCGGTTTGGTTTGGTTATGTT
GAATTATGTTTGTCGATTTTTGAGAGGTTTCGTGTGTTGTGTGTGTTGTT
TGCAACGCGACCGCGCTAACCGGCTGACCAATGAAAATGTTGTCAGTCTC
AGGGCGTGTGCGTGGCCTGTGCGTGCTTTGTTTGTGTGGCTGAGCGTGGG
TTTTGGATTCCGAGATCTCAGTGTCCCTACCCATTACATGTCCCTGGTCG
TGGTTTGATGTCTCTGCGCTGGGTTGTGTAGGATATTCCACACACCCACA
ACACACACACCAGTTCATGGCATTTAGTAGAAGTGTTTTGTGTTTTCAAC
CGCACTGAGACTGACGTCTTTTCATTGGTCAGCCGGTCAGCGCGGTCGAT
GCTAATATTAAAAACACACACACGCACACCTGTTCTTTGCTTGTACCAGC
AGAACATGATGACCATGAACGACTTCATGGAGAGCGACGCCGCTCTGAAC
CAGATGCTTCGCTCCGTCACTCCCCAAGGCGCGGGCGGCGCCGGCGCCCC
TCCCCTCGTCCGCGTTGTTCGCGGGACCGGTGGGGCAGACACGGGTTGGA
CTGAGGTAGGACGAGTAAACAATTTTAAATAGTAGTTGTTGGTTGTTGCT
ATTGTTGTTTTGTCTTCACGCCAAAAGCCGCCCCGATCTCTCTACCCAGT
ACCTTCATATTTGTTCAGTAGTGGTACCGGTATGTCGGGGTCCCGAGTTG
TTGTTGTCTTCACATTAAGATCCGCCCCGATCTCTCTACCGTACCTTCGT
CTATGTTCAGTAGTGGTACCGATATGTCGGGGTCCCGAATAGCGTGGTTC
CCGATAAAATCGCGGTAAGAAAATCCTTGACGCAGCAACTTACGTATGCA
TAGTCTTCTACTAAATTCGTGTTCAGAGACCTGAGCGCGGGTTCGTATAA
AACACGGTAATTCTCGTCGATCACTTGTATGCATATCGGGACCTCCACTG
TATGGGTGGACAGGAGGCGTGTTTCTCGCGTCTGGTTCTCTGGTAGGTAC
GGGCAACCGGCCCACGACGTGATGGAGCGCGCTCGGATGTATGTTTTGGG
AGGAGGCCGTGGTGGTTGGGAAGAAAGGGGCATGCTGATGTCGCCGCAAG
GGGTTTGGAGGAGGCCGTAGGGGTTGGGAAGAGAAGGGCAGGCTGATGTT
GTCGTCGCAAGGGGGGTTGGTTTGTGCTACGGCGGGGATGTCGATCCACT
TCACCCTTCTCACGTGTTCGTCGTGCATGCCCGGCCGCCTTTTTCACCTC
TGCTCATCTCTCCTTCTCGGTGTCTCTCGGCTTCGGTCCAAAGCAGATGA
TCGCACATGACCTCCATGCGGCAGCGCCAGGGCCTTCGCACAACACCACC
AGGTGGGAAAGCCAGTGTCAATAGCGGGCCTGGCTCTGGGTGAACGGCTG
GGGGGATGTTTAACCGGTGGCGTGCCTTGACCGCCGGCCTTCGTGCCCTC
TCTGCCCTCGTTCGTTCGTTCATTCACGAATGGAGACAATTCTGGAAGTA
GCCTCCACCCTCCAACCGTCCCGCACACGCAAGACTGGTATGTATTCCGT
AACTAGCCGGCTAGGTGGCGCTGTGGATACCATTCAAGAAAAGGCTTAGA
GTGAGAGGCAGCGAGAGAGAAGAGAGATTAACTCGATGGCATTTCATTGG
TCGTCCGGTTAGCACGGTCCGACGCTATCTAAGGAGCGGGTAGTACAAGT
ATAGTCTTTCCGTGATCGTATTCCAGTGTATATTTCTATCGCGGCCAACC
CCCACGTTGCCCTTACCCTCAACCCCGCCGCCGCCCCTGCCCCTCCCCCT
ACACATCGTTGTTGTTATCGGCAGACTCTTCCCGGACGGCCCGTCGGCGG
CCACCCAGGCGCACGCCGCCCCCGTCGTGCACCCGCTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:14637..16727-

>mRNA_Ecto-sp6_S_contig101.774.1 ID=mRNA_Ecto-sp6_S_contig101.774.1|Name=mRNA_Ecto-sp6_S_contig101.774.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:14637..16727- (Ectocarpus species6 EcLAC_371)
GAGCAGCTGTCTCTGTGGGGGGTGCAGCCGCCGCCGGGCCTGGCGAGACA
GTACGCGACGCGGCACGGGGAGCGTGGGGGAGGAATGCAGAACATGATGA
CCATGAACGACTTCATGGAGAGCGACGCCGCTCTGAACCAGATGCTTCGC
TCCGTCACTCCCCAAGGCGCGGGCGGCGCCGGCGCCCCTCCCCTCGTCCG
CGTTGTTCGCGGGACCGGTGGGGCAGACACGGGTTGGACTGAGATGATCG
CACATGACCTCCATGCGGCAGCGCCAGGGCCTTCGCACAACACCACCAGA
CTCTTCCCGGACGGCCCGTCGGCGGCCACCCAGGCGCACGCCGCCCCCGT
CGTGCACCCGCTCCTC
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