mRNA_Ecto-sp6_S_contig100.751.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.751.1
Unique NamemRNA_Ecto-sp6_S_contig100.751.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.751.1 vs. uniprot
Match: D7FRM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRM1_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 1.250e-146
Identity = 296/481 (61.54%), Postives = 302/481 (62.79%), Query Frame = 1 
Query:  346 MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAVDIGKGSTATAAPMAKTKPLLRKTLPVPVLEVSIVREKRISGGPFKQDGVASAAVDAETTSVAATAREPAAGGGGADRIGFRQLLSTKKPEQQLLRSGSAPDPPTTTLRIASKMTTGVPTYQLAEVRPHLLPGRGKVECAPSELKVDFAGTTRGCWGESRDSIVPVGAVSRSQDGIAPTSGNTAAKPTAAKVLPLLSPEQDLTDKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQAPSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHRKQVEAETEAARXXXXXXXXXXXRRILAERNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKDFKAYSLEQEKRVTQAAAPDVPDLQPAVDNVTPPRQ 1788
            MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAV+IGKGSTATAAPMAKTKPLLRK LPVPVLE                                                                                                        ++ C                                                    VLPLLSPEQ+LT KGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQ PSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEH            XXXXXX     RRILAE NNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEK+FKAYSLEQE RVTQA+APDVPDLQPAVDNVTPPRQ
Sbjct:    1 MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAVEIGKGSTATAAPMAKTKPLLRKPLPVPVLE--------------------------------------------------------------------------------------------------------RLNCP------------------------------------------------RRSVLPLLSPEQELTGKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQEPSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHXXXXXXXXXXXXXXXXXXAEEAERRILAEHNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKEFKAYSLEQENRVTQASAPDVPDLQPAVDNVTPPRQ 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM1_ECTSI1.250e-14661.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:494345..498503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2429
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002530.1
Cds size1617
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.751.1prot_Ecto-sp6_S_contig100.751.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 494519..497865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348726.2011752-UTR-Ecto-sp6_S_contig100:494344..4945181682348726.2011752-UTR-Ecto-sp6_S_contig100:494344..494518Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 494345..494518 +
1682348726.263696-UTR-Ecto-sp6_S_contig100:497865..4985031682348726.263696-UTR-Ecto-sp6_S_contig100:497865..498503Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 497866..498503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348726.212581-CDS-Ecto-sp6_S_contig100:494518..4945851682348726.212581-CDS-Ecto-sp6_S_contig100:494518..494585Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 494519..494585 +
1682348726.2215579-CDS-Ecto-sp6_S_contig100:494890..4957001682348726.2215579-CDS-Ecto-sp6_S_contig100:494890..495700Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 494891..495700 +
1682348726.2311282-CDS-Ecto-sp6_S_contig100:496350..4966761682348726.2311282-CDS-Ecto-sp6_S_contig100:496350..496676Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 496351..496676 +
1682348726.2397459-CDS-Ecto-sp6_S_contig100:497010..4972971682348726.2397459-CDS-Ecto-sp6_S_contig100:497010..497297Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 497011..497297 +
1682348726.248554-CDS-Ecto-sp6_S_contig100:497738..4978651682348726.248554-CDS-Ecto-sp6_S_contig100:497738..497865Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 497739..497865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.751.1

>prot_Ecto-sp6_S_contig100.751.1 ID=prot_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=539bp
MTLISLRWSSASNRVPTRGAGRARAASQRSLSNSNVPARRQEKPRDISTS
RWRLSRSMSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEP
AVDIGKGSTATAAPMAKTKPLLRKTLPVPVLEVSIVREKRISGGPFKQDG
VASAAVDAETTSVAATAREPAAGGGGADRIGFRQLLSTKKPEQQLLRSGS
APDPPTTTLRIASKMTTGVPTYQLAEVRPHLLPGRGKVECAPSELKVDFA
GTTRGCWGESRDSIVPVGAVSRSQDGIAPTSGNTAAKPTAAKVLPLLSPE
QDLTDKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQAP
SLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQL
KARLRVMEWKRRRAEELESQQEEQATQEHRKQVEAETEAARKLAAARAEE
AERRILAERNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAF
EKDFKAYSLEQEKRVTQAAAPDVPDLQPAVDNVTPPRQ*
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mRNA from alignment at Ecto-sp6_S_contig100:494345..498503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.751.1 ID=mRNA_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4159bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:494345..498503+ (Ectocarpus species6 EcLAC_371)
TCTCCCATCTATCTCCAAAATGCGGCATAATGAATGCTGAATCGTAACAT
ATCCCGCCGCAACTTCGCTGCCCGTGTCTTCGTGTCTTCGCGTTTTCGCC
TTTCGCCTTGCAGCCTTGCAGCAGATGGGGCGCTGTGATTTGCTCAGCGG
GTCGCGAGTTGCCCGCTGGCAGCGATGACGTTGATCAGTCTCAGGTGGTC
ATCTGCTTCAAACCGAGTCCCAACAAGGGGCGCTGGTCGAGGTGCGCACT
TTTGTGTCTGCAATGTCAGAGTTTCGCGAGTGAATGAAAACAACCAACAC
TCGATCCCACTCGTGACCCGCACAGCTTGAGGTACTGATAACTTCGAGCG
GATTATGCGTCATTCGCACGCGTCTCTTTGATGCTCAGGGTCACAGGCCG
CAAGCGTCTTGGGCCTGGGGTTTTAGTTGATCCGCTGTGCGTGCATCTTG
GCCATCATCATCATCGTTATTTAATTCGGCCGCCATCCTTCGTCGGAAGT
CCACAATAACATCTTTTCTCCCTCGCATTTTCCACCGCAACACCAGCAAG
AGCCGCTAGCCAGCGATCTCTGTCCAATAGCAACGTCCCAGCAAGACGGC
AGGAGAAGCCGCGAGATATATCTACGAGCAGGTGGAGGTTGTCCAGGAGT
ATGAGCGTCTCTGGTTCCAAGCCGGCCTTTTCACCCAAACCACCACCACA
GCCATCACCCCAAGGGGGGTTAGCAAAGCAGGGTGTCAGCGCTCAGGATG
CATTGGTGGGTTCAAATAGAATAGAACCTGCTGTAGACATCGGCAAAGGG
TCAACAGCAACAGCAGCACCTATGGCCAAGACCAAACCTCTTCTTCGAAA
AACCCTCCCAGTCCCGGTGCTGGAGGTGAGTATTGTGCGCGAAAAGCGAA
TCTCGGGCGGTCCCTTCAAGCAAGACGGTGTGGCTTCTGCTGCGGTGGAT
GCGGAAACAACATCTGTGGCAGCCACTGCGCGAGAACCTGCTGCTGGGGG
CGGTGGCGCCGATAGGATTGGTTTTCGGCAATTGCTGTCGACAAAAAAAC
CAGAACAACAACTTTTACGGTCGGGGTCAGCACCTGACCCGCCGACGACG
ACACTCAGAATCGCTTCGAAAATGACCACTGGTGTACCTACATATCAGCT
AGCAGAGGTAAGGCCACACCTGCTTCCCGGACGGGGCAAGGTTGAGTGTG
CACCCTCTGAGCTCAAGGTGGATTTTGCTGGAACAACTCGGGGTTGTTGG
GGCGAGAGCAGAGACTCAATTGTCCCTGTCGGAGCGGTGAGTCGTTCCCA
GGATGGGATAGCACCTACTAGCGGAAACACAGCGGCCAAGCCAACTGCAG
CGAAAGGCAAGTAAAAGCAGTCCAGGCTATGTAAACATATCCATATTTCT
CGCGGTTTTAGTTTGGGTGGCAGCCGAAACGGCCGTCAATTGTGAAACCT
CCCTCCGATTCCTCTTTGACAGAGGCAACATGCCCCAAGTTCAGATCACT
TTTTTGGCGAGTGCGTGCTTGGTTTTGCTTGGTTTACGGTGTGAATGTGA
ATGTGAACCAGACACCGTTGTCTCCTACCAAAGAAGACAGAATCCCCCAA
AAGTTGGAACTTCAAGTCTCAGCGTTAATAGTCCTGTTGTGTCCTGGGGT
CATACTGCGGGAGGGAGTCATAGGAAAGGAAGTGTTCATAAGATTGATTA
GTTTCACTGAGGTGTTCTACTCCACACGAAACAATCGAGGTAACACATGA
GAGATATGTCGATCCTTAAAGTGCGTCACACAACAACAGAGGAGAGGACC
TTCTGAACCCTTCTCACTTTAAAATTGAAGGCACACAACGCAGGAGGAAA
CGCCAAAGAAATAAAATTTCCTGAGGGACGATTCCCTGTGTGACCCCGGC
TGGTGCGTCAAACACGTACACCGTAAGGTGTAGACTTACCCCCGGATATG
TGGGGCGAAAACACACGATTCCTAACCGTTCGCACGCCTCGTTCGTACTC
TGCCAGTGCTACCGCTGCTCTCACCAGAGCAAGACCTTACGGACAAAGGT
GTAGGCAAGTTGAAACAGCGGCTCGCGCCATTGCATCGAAGGAAATCCGA
CGTGGACGGTCGCTTTCGTAGAAGATCCCGTAACCTCAGCAGTGCCCAGA
GAAAGCCTGCCTCGTCGGGCCAAGCGCCCAGCTTGGCGAGACGAAGGAGC
ACTACCCCTGATGCATCCCGACCGAGCACTACCAGCAACACAAATACGGC
ACGTGAAGGAGTGCCAAGCAGCCGGACGTCCTTCAGCAGCGAGACCGCGA
CGGACCCGGGGGCTGATCAGGCCCAACTGAAGGTATCCTTTTGAAAAATT
GTCCCTTGTTCCTGAACATACAGACAGACTTGCATTCATTGCAGTCCTGG
GTGTACGCGAGGAAGTTTGCGTATGAAGCGACTGGTGCCCCAAGCATAGC
GCACCTCCGGGGCTAGCAGCCGCCAAATTTCTGAGCCGCCAAAAGGGGGC
TTAGTCTCTTGGTGATCAGTACGTTACTCACCCCCTCTACGGCAGAACCA
AGTACCACGTGCATACACCTGACGATGGTGGAGGTTTGGTAGCGCTGGCG
CCGGATTCGTGTGTGTCAGGCGTCGAAACTGCAAGGTTGTTTCCAACTTC
GTCCGCTTTCGAACAGGCACGGTTACGGGTGATGGAGTGGAAACGGCGAA
GAGCAGAAGAGTTGGAAAGCCAACAAGAAGAGCAGGCTACTCAGGAGCAC
AGGAAGCAGGTAGAAGCGGAGACGGAGGCCGCCAGAAAACTAGCAGCGGC
CCGAGCCGAAGAGGCGGAGCGACGAATTCTCGCTGAGCGTAACAATTCGG
CGGATGCCGTCCGAGCGTCAGAAGCCGCCGAGAGGTGGGCTAAGGCTTCG
CGGGAGAGAGAACGTAGAAGGGCGGAGATATACGCTATCAACGCGGTCAT
GAGGTAGGGGCACGTTTTTTTCGTTTTTTCCAATCTCGAACTGACTGAGG
AAAACTGTAGGCAAGTGCATTCATGATGGTCATACGGACGTGCAATTACT
TCATAGTCTCTAATCTTTATGCTGTTGTGACAAGCAAGGGACCTATCGTT
GGCTGCGGCGGCAGCACGTCTGTGAACGGGGTGTTATTGTCATGGGCAGC
TTGATTCGTACGAAGGGAGTCATGCCAAACGTTGACCTGCTCATTTTACG
AAAGTCCGCCAGCTTCAACTCACTCCAGTCATGCCAAAGCTCAAATCCTT
AGTTTCTGCGAATAGTCTAGCCAGCTAGGAACCGTTTACTTAGCTTGGAA
CTGCTTTATTTTATGCCCGAGCGCCTGACCAGTTTGCTCAGTACATCTGA
CCCAGGGTTCTTTCGTGTTTTTTCCTTTTCGTTCGAAATTTCAGAGCCGC
TTTTGAAAAGGACTTCAAGGCATATAGCTTGGAACAAGAGAAGCGTGTGA
CGCAGGCAGCTGCGCCCGACGTGCCAGATCTACAGCCTGCTGTGGACAAT
GTGACCCCTCCGCGACAGTAGTAGTGCTACCATGGGTTTGTCCTGATGTT
TCTTGGGGCAGCGAGAGGAGACAGCATTACGTTGACGGGGGCATTGGGGG
ACGATAGTGATTGGTCGTTTCTATTTACAGTTAAGTTTACCTAGTTTAAC
GTACATGTGAAATAGAATATTACCTTTTTTTTGTTTTCCTTTCGCGAGTG
GGGACTGCCTGCGTTTAACGGGCCACACGAGCTTTGCTCTACAGGCTTGC
TTGATTGATTGGAGTTGTTTCAATTCTTGTATCGTCGGAGGCCCCTTGTT
GAGTGCTGTAACACAAATTGTACTTAAGTCTTGAGGTTGTGGTACTATTA
AGGGCAAGTGTCTCGTACACTCCTATAGTGCACTACCTGGCGCTGGCTAG
ATTTTTTGGTTTTGTGCAGACGTGCCTCCTCATTCGTGCGTTCTACACAG
CAGGTGGGAGAGAGGGTGTGGAGAGACAACACCACCAGTAGATGAAAACC
TTGTGCTTTTGGGCTCCTTTGAAGCCGACATTCTGTGTGTGAATAGTATG
CGGGTCAATCTGTATTCCGGTTGTATTGGTGTTTTGTTGATTACCATATG
GATGCCTGTGACGTTTTACTCACGCAAGGGAAATCAATCGTGCAAAGCTG
TAGAAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:494345..498503+

>mRNA_Ecto-sp6_S_contig100.751.1 ID=mRNA_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:494345..498503+ (Ectocarpus species6 EcLAC_371)
ATGACGTTGATCAGTCTCAGGTGGTCATCTGCTTCAAACCGAGTCCCAAC
AAGGGGCGCTGGTCGAGCAAGAGCCGCTAGCCAGCGATCTCTGTCCAATA
GCAACGTCCCAGCAAGACGGCAGGAGAAGCCGCGAGATATATCTACGAGC
AGGTGGAGGTTGTCCAGGAGTATGAGCGTCTCTGGTTCCAAGCCGGCCTT
TTCACCCAAACCACCACCACAGCCATCACCCCAAGGGGGGTTAGCAAAGC
AGGGTGTCAGCGCTCAGGATGCATTGGTGGGTTCAAATAGAATAGAACCT
GCTGTAGACATCGGCAAAGGGTCAACAGCAACAGCAGCACCTATGGCCAA
GACCAAACCTCTTCTTCGAAAAACCCTCCCAGTCCCGGTGCTGGAGGTGA
GTATTGTGCGCGAAAAGCGAATCTCGGGCGGTCCCTTCAAGCAAGACGGT
GTGGCTTCTGCTGCGGTGGATGCGGAAACAACATCTGTGGCAGCCACTGC
GCGAGAACCTGCTGCTGGGGGCGGTGGCGCCGATAGGATTGGTTTTCGGC
AATTGCTGTCGACAAAAAAACCAGAACAACAACTTTTACGGTCGGGGTCA
GCACCTGACCCGCCGACGACGACACTCAGAATCGCTTCGAAAATGACCAC
TGGTGTACCTACATATCAGCTAGCAGAGGTAAGGCCACACCTGCTTCCCG
GACGGGGCAAGGTTGAGTGTGCACCCTCTGAGCTCAAGGTGGATTTTGCT
GGAACAACTCGGGGTTGTTGGGGCGAGAGCAGAGACTCAATTGTCCCTGT
CGGAGCGGTGAGTCGTTCCCAGGATGGGATAGCACCTACTAGCGGAAACA
CAGCGGCCAAGCCAACTGCAGCGAAAGTGCTACCGCTGCTCTCACCAGAG
CAAGACCTTACGGACAAAGGTGTAGGCAAGTTGAAACAGCGGCTCGCGCC
ATTGCATCGAAGGAAATCCGACGTGGACGGTCGCTTTCGTAGAAGATCCC
GTAACCTCAGCAGTGCCCAGAGAAAGCCTGCCTCGTCGGGCCAAGCGCCC
AGCTTGGCGAGACGAAGGAGCACTACCCCTGATGCATCCCGACCGAGCAC
TACCAGCAACACAAATACGGCACGTGAAGGAGTGCCAAGCAGCCGGACGT
CCTTCAGCAGCGAGACCGCGACGGACCCGGGGGCTGATCAGGCCCAACTG
AAGGCACGGTTACGGGTGATGGAGTGGAAACGGCGAAGAGCAGAAGAGTT
GGAAAGCCAACAAGAAGAGCAGGCTACTCAGGAGCACAGGAAGCAGGTAG
AAGCGGAGACGGAGGCCGCCAGAAAACTAGCAGCGGCCCGAGCCGAAGAG
GCGGAGCGACGAATTCTCGCTGAGCGTAACAATTCGGCGGATGCCGTCCG
AGCGTCAGAAGCCGCCGAGAGGTGGGCTAAGGCTTCGCGGGAGAGAGAAC
GTAGAAGGGCGGAGATATACGCTATCAACGCGGTCATGAGAGCCGCTTTT
GAAAAGGACTTCAAGGCATATAGCTTGGAACAAGAGAAGCGTGTGACGCA
GGCAGCTGCGCCCGACGTGCCAGATCTACAGCCTGCTGTGGACAATGTGA
CCCCTCCGCGACAGTAG
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