mRNA_Ecto-sp6_S_contig100.745.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.745.1
Unique NamemRNA_Ecto-sp6_S_contig100.745.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.745.1 vs. uniprot
Match: D7FRM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM7_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 7.590e-126
Identity = 190/203 (93.60%), Postives = 191/203 (94.09%), Query Frame = 1 
Query:  370 MVTADGDRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPPPGAEXXXXXXXXXSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKIYVMQNAEMYARLKKRHTGMAEEGYFPPTMC 978
            MVTAD DRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPP GAE         SQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAK+YVMQNAEMY RLKKRHTGMAEEGYFPPTMC
Sbjct:    1 MVTADSDRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVLLNRVLSDKSTLPSACFVPP-GAEAAARRASSSSQRPKEPRPLPEDGETAVVQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVGGGYLLPTACFGLLKPPDEEQAKMYVMQNAEMYVRLKKRHTGMAEEGYFPPTMC 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM7_ECTSI7.590e-12693.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:459350..462859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2270
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002470.1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348725.5705564-UTR-Ecto-sp6_S_contig100:459349..4606381682348725.5705564-UTR-Ecto-sp6_S_contig100:459349..460638Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 459350..460638 -
1682348725.6069021-UTR-Ecto-sp6_S_contig100:462490..4628591682348725.6069021-UTR-Ecto-sp6_S_contig100:462490..462859Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 462491..462859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348725.580468-CDS-Ecto-sp6_S_contig100:460638..4608681682348725.580468-CDS-Ecto-sp6_S_contig100:460638..460868Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 460639..460868 -
1682348725.5891914-CDS-Ecto-sp6_S_contig100:461471..4617321682348725.5891914-CDS-Ecto-sp6_S_contig100:461471..461732Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 461472..461732 -
1682348725.5976758-CDS-Ecto-sp6_S_contig100:462369..4624901682348725.5976758-CDS-Ecto-sp6_S_contig100:462369..462490Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 462370..462490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.745.1prot_Ecto-sp6_S_contig100.745.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 460639..462490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.745.1

>prot_Ecto-sp6_S_contig100.745.1 ID=prot_Ecto-sp6_S_contig100.745.1|Name=mRNA_Ecto-sp6_S_contig100.745.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=204bp
MVTADGDRFKGIRRDTLHNEVDGCFDDLEEFEDRNETSPQYRVTHQECVL
LNRVLSDKSTLPSACFVPPPGAEAAARRASSSSQRPKEPRPLPEDGETAV
VQLVRRITGAVQPVLSSLTTPLHARKKEMGGTITEEQCQALADYLSPSVG
GGYLLPTACFGLLKPPDEEQAKIYVMQNAEMYARLKKRHTGMAEEGYFPP
TMC*
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mRNA from alignment at Ecto-sp6_S_contig100:459350..462859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.745.1 ID=mRNA_Ecto-sp6_S_contig100.745.1|Name=mRNA_Ecto-sp6_S_contig100.745.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3510bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:459350..462859- (Ectocarpus species6 EcLAC_371)
TGAAGACATTGAGCTGACGAGCAAAGAAACATGGTACATTTCGTGGGGAC
CTCGCGTGCTATGTGGCAGCTCTGATGCACTACATGTACGAAGGATGTTA
AAAATAATTTTTCTTCTAGTACGGTGTTCGGGGCGACACTTCTGACTGCA
ATTTGTCTCATCTGAGCAAGCAGTAGACACCCCCTAGCAGATACATCATC
AGCGAAAAATATCCCGCAATTCGAAACGGTCAGCGAGCTGCCCCAAATAC
ATTCTGAAGTCCCCTCCTCCTCTCTGTCACCCTCTGTTCGTGCTGACTGT
ATTGAACTATGATCCGCCGCACACGGGCTTAATTGTTGTTTAGCAGAACG
GACGGAAACACAGTCAATCATGGTCACCGCCGATGGCGACCGTTTCAAGG
GCATTCGGCGTGATACCCTGCACAACGAGGTGGACGGATGCTTCGACGAC
CTTGAGGAGTTCGAAGACCGCAACGAAACATCTCCTCAATGTGAGTCAGT
CTGTCGCATGCTTGGGTCAAGCTAGAGAGCGGACCAACTCGATAGAGGCA
TGCGCCTTTTCTTCATGTCAAATGACGATGAACAGGCGCTCCAGAAATAG
TGTGGAGCCGTTTGCGCATGTTGATGGCTTCGACTTGATGGTCTTCCCCA
GTGAAGCTTATTGTATCGGGAGTTTCGGGGTGTTGCCGGTGTAAGTCTGG
ATAACGATCCGTGGGCTTGGGTGAAGAACGGAATGGCGTTACTTGGAAAT
CTGTGTAGTTTGATGGTACACGTTGAATCATGCAAAATGTGTTGCGTAGA
ACGGCTTAAAGCCTAGGCTTAAGGCCTTTTAAGGGCCGCAACCGGAGCCC
CGGAAGATCTCGCGCGAGAGGTAACAACGAAGTACTCCCCAAAGGCAAAA
CCGCACTACAGAACGCCGCTCCACGCACACCGCAATAAAGCAACATCTGT
GCTTACCACCGCGCACCGCAATAACGGCAATATGTACATATTTGCCACCT
TCGTTCGTATTGTTGCTCTTCGAACCGAATCATTTGAACCCCGATTTGAC
GCATGGACACAATTTCCACCTTTGTTTCGTTTTGCGGCGCTCTTCGACCC
GAATCATTTGAACCCACACACCCACAGACCGGGTTACCCACCAGGAGTGT
GTGTTGCTTAACCGTGTCCTCTCGGACAAGTCCACGCTCCCATCGGCCTG
CTTCGTGCCGCCGCCGGGTGCTGAAGCAGCGGCACGGAGAGCCTCCTCCT
CCTCGCAGAGGCCCAAAGAACCCAGGCCGCTGCCGGAGGACGGCGAGACC
GCCGTGGTGCAGCTCGTGCGGCGAATTACGGGGGCCGTTCAACCGGTACT
AAGCAGCCTCACCACCCCTTTGCACGCGCGCAAGAAAGGTGTGGAAATTC
TGTAAGCAGTAAGGACGCTGCGTCGTGGCAGAGCATGGGTGTCTGTCGTC
TTTTGTAGACGGACTGGCACAGCAACGAAACAGCCCCTCCCCAACACCTA
CTCGTGCTTGTTGCTGTCATGCTGATACGCAGTTCTCAAGTTGCGTCTGT
GCTTCGTTGTTTTTACATTAAGTCGTGGGGCGCCAATGCAGTACATGCAG
CGGTATACCCTGCAACACGAGTTCCTCCTCTGTAGTACTGTAGAGGGTGC
AGTGTTCCTTCACCGAAACGAACGATAGCATATGAACAGCTGCACAAGGC
TTGCGTGACGTGACTCCACCATGCACGAAGCATGCGGAAATATCCATCTG
ACGTTCCAGCGAGTTCGTCCTGCTACTGCAATACGGGCACCACACACAAA
AATGCATTCCAAATGTTCACGACCCCCTCCTTCCACTTGCTACCGCCTCA
CTCGCCGTATTCTTGTGCCCCTTTGCTGCTTGATTCCGTTCCTTGCTCGT
TGCATCTCTGTCGCGCTTGCTTTGGCCGTGTGCTTCTCTGCCCCCCGCCG
CTCTCCTCCACCCACCCTCCCCTCTCGCGGTCTCTGGGCAGAGATGGGTG
GAACGATAACAGAGGAGCAATGCCAGGCCCTGGCCGACTACCTCTCCCCT
AGCGTCGGCGGGGGTTACCTGTTGCCGACGGCGTGCTTCGGCCTCCTCAA
GCCTCCTGACGAGGAGCAGGCCAAGATATACGTCATGCAAAACGCCGAGA
TGTATGCACGCCTCAAGAAGCGACACACCGGAATGGCAGAGGAGGGCTAT
TTCCCCCCCACGATGTGCTGAGGACACTCCCGGTGTGGCAGCGCCCACGA
GGCCGGGTGTCGAAGCGACCCTCCGCCCCCACCTTCATGCACGCCAAAAG
TGAGGGTGTGTTTTGGTTCTTTCGTTGTGGGTGGCTAGCTACAGCTCGTT
CGCGAATTTAAAGACGTAGGGTCGGTGGTCGAGGACTCGGCCAGTGCCTC
TTTCATGATTTTGTGTCATCGCGGTCGTTTCAACTGCGGAAGCTGTTTCC
GTGCGTCTTCTCAGGTAGTGCAAGCAGCAATATGTTGATGGTGTCATGTT
GAATGGTGGGGTGTATATTAACAATCGCGCACGAAGATGGAGGTTGAGGT
GCTTCTCCACAGCAGTGTTGTGGCCATCATCTTTCCATTTGTTGGAACAG
CAGATTGTACAACTTTTATCGTGTCATGTTTACAAGTGTTACTTTCCGGT
TGTGGTTGGTCGAGGCGCGCGTTGTGTGTAGCCTATTTGTATATCACGTA
CACTACTGAGGGAGAAAATGACGAAAAGAGGTGCGGCGCAGGTCGATGTT
TTTGTCGTGTTTTTGCTTGCTTGCTCTGCATGAAACAGACTTGTAAGGGG
TCGGGCAGGAACGGGGGGGCGAGGGGGGTTGGCATCACGGTTCGCGTAAC
GCAGAATAAGTACGATGTTGCTCTGCAGTAGAAACGTCCAACATCTGATC
TAGCGACGACGTTGGTCCTTCGATTTTCTTGCCTTGTTGTGAAGAGTCCA
AAAAGTGCGCGGGTGGAAAGGAATCTATGGTGGCAATTCAAGTTCGGGAC
CCTGTGTGTGCGGTAGGTATATGCGCCGCATGGTGCGTGCATCGCGAGCG
CAAGTTTCTCGTGTAGGGGAGTGTCAGGAAGGAAGGTGTTCGTGCCATCG
TTCATGGTTGTAGACCGTAGCGACTTTTAGCTTTACTTCCCACGGGAAAT
ATCGTACGCCCACGTTCTTGCGCGAACGTTCACCCACCTCCCTGGTGTGT
CTATGTATGCGTACCCTGATTTGACGAAAACGGTAACCTGAGGTCTTTCA
TCGCAATAGCTGGGTCCTGCCCCACAACGCTACGAGGACGTCGGCCGGCG
CTATTAGTGCTGTTCCTACTAGCCTCTTCCCGCACGCCTCGCGCACGCAC
GACCGAGCGTTTTTCGTTCGTGCAAAGATGGGTCCGATCCTCCTATTGCT
GGATGTTCGGCGGATGGGTCGGTCCATCACGAGCGTTCGTGACGCCGTCG
TAGAACGTACCGAGACGGCGACAACAATTACCAATTAAAAAGTGGAGGAT
TCGAAGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:459350..462859-

>mRNA_Ecto-sp6_S_contig100.745.1 ID=mRNA_Ecto-sp6_S_contig100.745.1|Name=mRNA_Ecto-sp6_S_contig100.745.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:459350..462859- (Ectocarpus species6 EcLAC_371)
ATGGTCACCGCCGATGGCGACCGTTTCAAGGGCATTCGGCGTGATACCCT
GCACAACGAGGTGGACGGATGCTTCGACGACCTTGAGGAGTTCGAAGACC
GCAACGAAACATCTCCTCAATACCGGGTTACCCACCAGGAGTGTGTGTTG
CTTAACCGTGTCCTCTCGGACAAGTCCACGCTCCCATCGGCCTGCTTCGT
GCCGCCGCCGGGTGCTGAAGCAGCGGCACGGAGAGCCTCCTCCTCCTCGC
AGAGGCCCAAAGAACCCAGGCCGCTGCCGGAGGACGGCGAGACCGCCGTG
GTGCAGCTCGTGCGGCGAATTACGGGGGCCGTTCAACCGGTACTAAGCAG
CCTCACCACCCCTTTGCACGCGCGCAAGAAAGAGATGGGTGGAACGATAA
CAGAGGAGCAATGCCAGGCCCTGGCCGACTACCTCTCCCCTAGCGTCGGC
GGGGGTTACCTGTTGCCGACGGCGTGCTTCGGCCTCCTCAAGCCTCCTGA
CGAGGAGCAGGCCAAGATATACGTCATGCAAAACGCCGAGATGTATGCAC
GCCTCAAGAAGCGACACACCGGAATGGCAGAGGAGGGCTATTTCCCCCCC
ACGATGTGCTGA
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