mRNA_Ecto-sp6_S_contig100.719.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.719.1
Unique NamemRNA_Ecto-sp6_S_contig100.719.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A6H5KTH9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH9_9PHAE)

HSP 1 Score: 685 bits (1767), Expect = 7.810e-242
Identity = 363/389 (93.32%), Postives = 372/389 (95.63%), Query Frame = 1 
Query:    1 MARWYVLLIFVLEGICRSTASDSAFVISKLSSRRQQWAWTAGRTQRERRDSACSMGAGSGEGGGGEVVNKAIVAGLLGLQLLSLPLGVVSRQPRGAALPRLNVLSAAAEVTTPQATEEEKFVEIELEKFERKTQVEGNLKKQSTAKRVPLPDELQTPKKGKQSPRVKLVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQLPDDPKMTAGGSPPAKK 1167
            M R YVLLIFVLEGIC STAS SAFV SKLSSRRQQWAW AG TQR RR+S CSMGAGSGEGG GEV+NKA+VAGLLGLQLLSLPLGVVSRQPRGAALPRL+V+SAAAEVT PQATEEEKFVEIELEKFERKTQVEGNLKKQS AKRVPLP+ELQTPKKGKQSPRVKLVPVS++KLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCE DFVALIDGMYPT+KPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFF DIPDEMLRYERDSKVPL VRDAVLILKGPDKGRTAIVVGVIKSRNQAVVR DGTLTREMRILELSDIARQLPDDPKMTAGGSPP KK
Sbjct:    1 MERRYVLLIFVLEGICSSTASGSAFVFSKLSSRRQQWAWAAGSTQRGRRNSGCSMGAGSGEGGRGEVMNKAVVAGLLGLQLLSLPLGVVSRQPRGAALPRLDVVSAAAEVTAPQATEEEKFVEIELEKFERKTQVEGNLKKQSKAKRVPLPEELQTPKKGKQSPRVKLVPVSNDKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEEDFVALIDGMYPTDKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFTDIPDEMLRYERDSKVPLTVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRMDGTLTREMRILELSDIARQLPDDPKMTAGGSPPTKK 389
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A836C8F8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F8_9STRA)

HSP 1 Score: 237 bits (604), Expect = 6.360e-70
Identity = 122/214 (57.01%), Postives = 158/214 (73.83%), Query Frame = 1 
Query:  502 LVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQLPDDPKMTA 1143
            +VPV D +L  +V  IQ L PYL+EVEYLITS++W YL+GFLGVF+  E +FV LIDG+YPT  P D SSR++MQ EAQNVFLA+DDL  AS  K+ K +EK++VKLAL+YDRFLKAG +V  YDP+++TE F+  IPD  L Y  D+  P  ++D +LILKGPDKGRT  ++GVIKSR +A+VR D    +E+++L L DIA+QL   P   A
Sbjct:    1 MVPVRDNQLETAVAKIQALNPYLEEVEYLITSKNWGYLQGFLGVFSEQEENFVDLIDGLYPTESPADKSSREAMQYEAQNVFLALDDLNTASRYKRAKAAEKSFVKLALAYDRFLKAGGLVQTYDPITSTEPFYSSIPDSALVY--DTTKPPELKDNILILKGPDKGRTGRLIGVIKSRQEAIVRMDHN--KEVKLLSLGDIAKQLDTPPPAPA 210
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S2UZ25_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ25_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.010e-32
Identity = 90/214 (42.06%), Postives = 125/214 (58.41%), Query Frame = 1 
Query:  499 KLVPVSDEKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVS-NTEKFFVDIPDEML---RYERDSKVPLA---VRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTDGTLTREMRILELSDIARQL 1119
            K+  V    LA++   IQ L PY+DEVE  I    W  + GFLGVF+  E  FV LIDG++P+N P+D  SR+SMQ EAQ +FLA+D+L +A+  K+V+ S  AY KLA SY RFL+A  +VP  D     T     D   EM    +YE   +  L     RD VL++ GPDKGR   +V  I+   +AVV+ D  +T+E+  + L  + +Q+
Sbjct:  172 KVTGVGKSDLAEAKIKIQALQPYVDEVENYIYEERWPLMGGFLGVFSEQEDQFVNLIDGLFPSNSPLDTISRESMQYEAQRMFLALDELREAAKLKQVRISRDAYSKLAKSYFRFLEAAALVPKVDLAQLATSTNLNDSEMEMEAEEKYEERKQSTLERPEPRDEVLLVSGPDKGRLGKLVA-IEINGKAVVKLD--ITKEVIEVPLESVVKQV 382
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S2RHK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHK3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.170e-31
Identity = 74/205 (36.10%), Postives = 131/205 (63.90%), Query Frame = 1 
Query:  541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAVVRTD---GTLTR----EMRILELSDIARQLPDDPK 1134
            E I+ L  YL+E+E  I +R WD L  ++GVF   E  F  +ID +  +    D  ++ +M+ EA+ +FL +D + +A+  + ++ +EK+YV+LA++YDRFLKA ++   YD  ++T K +  IP+++L Y+R+   P  V+D VLI+ GPDKGRT  ++GV  + ++ VVR +    T ++    E+++++L ++A+ +PD P+
Sbjct:  168 ERIKVLYAYLEEMERDIFARKWDTLSSYIGVFEKQELAFENIIDSLRTSQAAADRDAKRAMEYEARQMFLTLDAMAEATRFRDIRQAEKSYVQLAIAYDRFLKAADLYDVYDD-TDTSKLYESIPEDLLVYDRED--PPRVQDDVLIIAGPDKGRTGKLIGVSDASSKGVVRVEYRKRTASKDASFEVKVVDLQNVAKTIPDKPQ 369
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7R9U506_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U506_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.940e-31
Identity = 66/168 (39.29%), Postives = 110/168 (65.48%), Query Frame = 1 
Query:  526 LAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVI 1029
            +A +   I  L PY+DE+E  I +  ++ L+ FL VF+  E  FV  IDG+        +++ ++M+ EA+ +FLA+D++ +A+  +K  G +K Y+KLAL+YDR+LKA + +P YD + +TEK+F +IPDE L ++ + K     +D V+ ++GPDKGRT +++G I
Sbjct:  114 IATARRKIAALKPYMDEIERYIFTNDYEPLRAFLNVFSQQEDSFVKTIDGVASRGTADAIAAAEAMEHEAKQLFLALDEIRKAATLEKPSGLKKGYIKLALAYDRYLKASDNLPGYDKIVSTEKYFANIPDEWLVFDTEKKPE--PQDPVIFIEGPDKGRTGVLLGYI 279
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A6U4CV34_9STRA (Hypothetical protein n=10 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CV34_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.830e-28
Identity = 78/200 (39.00%), Postives = 123/200 (61.50%), Query Frame = 1 
Query:  487 SPRVKLVPVSD--------------EKLAKSVETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNK-PVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVP-AYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSR 1038
            +PR K +P SD               ++ K+ E I  L PYLDE++  I +  +  L+ FL VF+  E  F+  I+ +   ++ P    + ++M+ EA+ +FLA+DD+ +A+  +K    +K Y+KLAL+YDR+LKA + +P  YD V +TEKFF D+PDE L Y+ ++ +P+++ D VL + GPDKGRT I++G  KSR
Sbjct:   92 APRPKKLPFSDVENRKPTAASAQWNSEVRKAREKIAALKPYLDEIQRYIYTEDYAPLRAFLNVFSAQEEAFLTTIESVGSASRGPAASVTAEAMEHEAKEIFLALDDIRKAATLQKPVALKKGYIKLALAYDRYLKASDNLPLGYDNVVSTEKFFADVPDEWLVYDTET-LPVSL-DPVLFIAGPDKGRTGILLGY-KSR 288
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.140e-26
Identity = 62/197 (31.47%), Postives = 116/197 (58.88%), Query Frame = 1 
Query:  541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGV---IKSRNQAVVRTDGTLT---REMRILELSDIAR 1113
            + ++  A  LDE++  I++  WD +  +   F T    F    D  +PT+ PVD +SR +++ E    + AV+ L +A+  +  + ++ A+  ++++YDR+LKAGN+   YD V++TE F+ D+ +  L+Y   SK P  ++D VL++ GPDKG+T  ++GV     S  +A+V+ + +     RE++++ L  +A+
Sbjct:  132 DKLRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLSATKAIVKLETSSALGMREIKVVPLDYVAK 328
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC)

HSP 1 Score: 118 bits (296), Expect = 2.300e-25
Identity = 66/197 (33.50%), Postives = 113/197 (57.36%), Query Frame = 1 
Query:  547 IQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGV-----IKSRNQAVVRTDGTL--TREMRILELSDIARQ 1116
            I+ +A  LDE++  I    WD L  +          F    D  +P   PVD ++R +++ E   +F +V+ L +A   K V+ +E+A+  +++S+DR+LKAG++   YDP+ +TEKFF  + D  L Y    + P  +RD VL+L+GPDKG+T I++GV      K + + VV+ D  +   RE++++  + IA++
Sbjct:  112 IRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKVKRKGVVKLDTKVGSIRELKVVPYAFIAKR 308
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK)

HSP 1 Score: 115 bits (289), Expect = 9.050e-25
Identity = 59/193 (30.57%), Postives = 109/193 (56.48%), Query Frame = 1 
Query:  541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKS-------RNQAVVRTDGTLTREMRILEL 1098
            + ++ +A  LDE++  I +  W+++  +   F      F    D  +      D  SR +++ E   +F AV+ L +A+  K  + ++ A+ +++++YDR+LKAG +  AYDPV++TEKFF D+PD  LR+   +  P  ++D VL+  GPDKG+T  ++G+ ++       +   +V+ D T+ R  +I E+
Sbjct:   89 DRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREI 281
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK)

HSP 1 Score: 115 bits (289), Expect = 5.760e-23
Identity = 59/193 (30.57%), Postives = 109/193 (56.48%), Query Frame = 1 
Query:  541 ETIQGLAPYLDEVEYLITSRSWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFLAVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKFFVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKS-------RNQAVVRTDGTLTREMRILEL 1098
            + ++ +A  LDE++  I +  W+++  +   F      F    D  +      D  SR +++ E   +F AV+ L +A+  K  + ++ A+ +++++YDR+LKAG +  AYDPV++TEKFF D+PD  LR+   +  P  ++D VL+  GPDKG+T  ++G+ ++       +   +V+ D T+ R  +I E+
Sbjct:  598 DRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREI 790
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTH9_9PHAE7.810e-24293.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8F8_9STRA6.360e-7057.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZ25_9STRA9.010e-3242.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RHK3_9STRA1.170e-3136.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U506_9STRA2.940e-3139.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4CV34_9STRA1.830e-2839.00Hypothetical protein n=10 Tax=Phaeomonas parva Tax... [more]
D7FKJ3_ECTSI7.140e-2631.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4GSY0_VITBC2.300e-2533.50Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3Y3I2_HETAK9.050e-2530.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3T3_HETAK5.760e-2330.57Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:264394..271779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.6
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FKJ3
Model size2191
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG OGs2BGND@1,2S19T@2759
Ec32 ortholog descriptionTranslation protein SH3-like domain
Ec32 orthologEc-12_002220.1
Cds size1170
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.719.1prot_Ecto-sp6_S_contig100.719.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 264394..270758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348723.1409833-CDS-Ecto-sp6_S_contig100:264393..2644681682348723.1409833-CDS-Ecto-sp6_S_contig100:264393..264468Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 264394..264468 +
1682348723.1495254-CDS-Ecto-sp6_S_contig100:264712..2650011682348723.1495254-CDS-Ecto-sp6_S_contig100:264712..265001Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 264713..265001 +
1682348723.156762-CDS-Ecto-sp6_S_contig100:266331..2664091682348723.156762-CDS-Ecto-sp6_S_contig100:266331..266409Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 266332..266409 +
1682348723.1638923-CDS-Ecto-sp6_S_contig100:267198..2673271682348723.1638923-CDS-Ecto-sp6_S_contig100:267198..267327Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 267199..267327 +
1682348723.1743722-CDS-Ecto-sp6_S_contig100:268064..2682641682348723.1743722-CDS-Ecto-sp6_S_contig100:268064..268264Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 268065..268264 +
1682348723.1818438-CDS-Ecto-sp6_S_contig100:269385..2694831682348723.1818438-CDS-Ecto-sp6_S_contig100:269385..269483Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 269386..269483 +
1682348723.189191-CDS-Ecto-sp6_S_contig100:270002..2701051682348723.189191-CDS-Ecto-sp6_S_contig100:270002..270105Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 270003..270105 +
1682348723.196343-CDS-Ecto-sp6_S_contig100:270560..2707581682348723.196343-CDS-Ecto-sp6_S_contig100:270560..270758Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 270561..270758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348723.2037194-UTR-Ecto-sp6_S_contig100:270758..2717791682348723.2037194-UTR-Ecto-sp6_S_contig100:270758..271779Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 270759..271779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.719.1

>prot_Ecto-sp6_S_contig100.719.1 ID=prot_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=390bp
MARWYVLLIFVLEGICRSTASDSAFVISKLSSRRQQWAWTAGRTQRERRD
SACSMGAGSGEGGGGEVVNKAIVAGLLGLQLLSLPLGVVSRQPRGAALPR
LNVLSAAAEVTTPQATEEEKFVEIELEKFERKTQVEGNLKKQSTAKRVPL
PDELQTPKKGKQSPRVKLVPVSDEKLAKSVETIQGLAPYLDEVEYLITSR
SWDYLKGFLGVFATCEGDFVALIDGMYPTNKPVDVSSRDSMQLEAQNVFL
AVDDLYQASMAKKVKGSEKAYVKLALSYDRFLKAGNIVPAYDPVSNTEKF
FVDIPDEMLRYERDSKVPLAVRDAVLILKGPDKGRTAIVVGVIKSRNQAV
VRTDGTLTREMRILELSDIARQLPDDPKMTAGGSPPAKK*
back to top

mRNA from alignment at Ecto-sp6_S_contig100:264394..271779+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.719.1 ID=mRNA_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7386bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:264394..271779+ (Ectocarpus species6 EcLAC_371)
ATGGCAAGGTGGTATGTCCTGCTCATTTTCGTGCTGGAGGGTATCTGCAG
AAGTACAGCATCAGACAGCGCATTTGTGAGTTACGAAATCCTCACTTAGA
CTCCGGTAACGTAGAATGTCGAAGGTAGATCTATCTATCCACGGTGTACA
AGTAGCCGTGCTGCAACTTGTTTTCATGTGCCGAGATGCCTCTCCCTGAT
AAGCGCCCCAGCACTCATCCAGCATTATCATCATGCCGACTATATTCGCG
TGTATCAGGCCCCGCTGCTTGTTGATGCGTCAAGTTGAAACACATGCACA
ACACTCCCCTTTTGCACAGGTAATCTCCAAGCTTTCAAGCAGACGACAGC
AGTGGGCATGGACAGCAGGGAGGACACAGCGGGAGCGGAGAGACTCCGCG
TGCAGCATGGGTGCCGGCAGCGGTGAAGGAGGAGGGGGCGAGGTCGTGAA
CAAGGCGATTGTGGCGGGGTTGTTGGGCTTGCAGTTGCTGTCGCTGCCAC
TTGGCGTTGTCTCCAGACAACCTCGAGGCGCGGCCCTGCCGCGGCTGAAC
GTTCTCTCGGCTGCTGCGGAGGTGACGACGCCGCAAGCGACGGAGGAAGA
GAAGTTCGGTAAGCTCTCTATACAGTAGTGTGCAAGCACTGCGCAGCCAC
TGCCCAAGCACCTGTAATAATCTGGCCCAAAAAATCGTTCTTCCGGTCGT
GAAGAGATTTTACGAAACCTAAAAGAGCTGTGGGTGCGCATGTTTCGTGA
ATCGGCGCGTGCCTTGGGCCGTTTTCGGCCGCTATTGTAAGAACTGCGTC
CAATCAGCTGTGCTTGCGTAGCCACGGACAGGACATGAGATTCGTCTGCT
GCAGAGCATTCAAAGTTGTGGAGGTAGGTGCTACCAAGGTGGTGAACAAG
TTATTCTGATGGACGCGCTATAGAGTAGATCACTCTTGCCCTCCTAATTG
TCGTGTACTACTGCTTCTGTACTGCTGTATAGCCAGCTACAGGGGCTCGG
GAACATGAAAAAAGCGAAATTTTCGGGTCGAGATTCAATTTTTTCGCATA
CAGTACTTCGTCGCCACCGTCGAGTACAGATTATAAATAGCGTCTAGTGT
GTAATTCCTCCGAGTGGCGTTTCTTAAGGCAACCCCCGTTTCCTCGCAAC
AACGAAAAAGGGACTAACAGGAATAATAGGAATAACAGGAATGGCATTTG
GAAGAGAAACCAAAAAACTTGATCGTGGACTAGAGCAGCTTTTTGCGGGG
GGAACGTGAACATTGAAAATCAACGAGGAAAGCGTCAATTTTGTTGTAGC
ATTTTGGCCTTTCATCCAAAAAACGAAGTATGTAACTCTGTGCGATCGAT
TAAACCTATGCAAATGCGTGCTTTTGGCCAAGGCAATACCCCGGTAAACC
AGCTTGATTCGCGTTCAATCCGGTTGTTCATCGGGGAAGCACACGTGGAG
AACGGCGGCGACGCCTCAACGAACCCACAAGATCCGGCACTTCGGCGCAA
ATTAGGGCCGCTGCAAATCGCAACAGTTCCTCTATTAATCGAGTTGCATC
CGGCTGTCTTCTATTGCTGTGAAGGCATGTGACGCTACTCACACACCACG
TCAATTCGCCCTGGCAATTTGGAGCAATGGTCGCTTGTTGTGAGCTGTGG
CTATCCGCAAACTGGAGCCTTGTTAACCAAAATCTCAACGCGGAGATGGT
GTTCAGAATCGTAATTTTCACGCACCTCAATATCGCGCTACTGCTGATCA
GGCGCACAGCAGTAATTTGGTTCGACGGGGTTGCTCAAGCTCGTATGACT
CCATGACACAAAGATGCAGAGGCTCGTGTCTCCCAAGGCTCAACAGTAGC
GAGGCAAGGGAGGATTGTTGTCTTATCTGCAAGCCCTTGCTGCTGCTGCT
GCTGTACGTCGGGTGTTTCGTGTCCGGGTGGCCGCCAGTCGAAATCGAGC
TCGAGAAGTTCGAGCGCAAGACTCAGGTGGAGGGAAACCTGAAGAAGCAA
TCTACGGCTAAACGAGGTGAGAGGTGGCATCCAACGGCGTGTGCGCCTAT
ATGAGTATCGCGACTGCTGCGCCGACGAAGCTAAATGTACGCGCTCTACA
ATGTCCCGTCGTCTCATTTGTTCGTTGTGAGCCCAGTGAGATGCGTTCGA
GTGTGCCGTAAAGGATGCGAGAGAACGCACGGGGGTGTTGGCGTTTTTCA
CAAGAGTGGTTTCTCCATAACCACATGTTCATAGAGTGGTTTCTCGATAA
CCAGGAGGGTACCCCTGCCGAAATAGTGATTTTGGAGATATTTTGTCGAG
GGCGTTGCTGAGGGGTACCGGTTGGTGTCGCACCGTCCTGGTTGTGGAGC
AATCAAGCTTTGGATAACGCCAACACGCCATTGCGTTCTCTCGCATCCTT
TCGGTAGGTACACTATATGCATAAACGTAGCATCTTGTTTCGGAACTGAC
GACTACAGTAGGCGGCTAGTCGAGGAGGAAGCACTCCGCCAAGGACGATG
GGAGCTTGCCTGTGGGTTGGGTGGAGAACGAGAGCGGCACCGTCGTTGCA
TGCATCATGGTAGCTGTGGTGGTCTTCTTCGCATCGGTTATCGTCTGTAA
CTATTGGTTGATGCATATATTAGCTCGGCCGTCCTTTCGAAATTTCGAGG
GACAAAGAAGCCGCACACCCCAACTGCCACCAGGACTGCTGCAGAACCGC
TACTGCTGTTGCGCCGTAAAAGCAGCAAGAGGAAACGAACAAGACAAATT
GAATGCCTCACTGTGTAATATCTTGCCGCTTGTGTACGGCGAACGGATGC
TGCAGTCCCCTTGCCGGACGAGCTACAGACGCCCAAGAAAGGGAAACAGT
CTCCTCGAGTTAAGCTGGTGCCGGTGTCCGACGAGAAGCTGGCCAAGTCT
GTGGAGACTATCCAAGGGCTAGCTCCTTACTTGGGTAGGTGTATGCAGGC
TGCTGTACACCGTCGTCGCCCGCCTTTGCTGTGTAGCATTACGTTGGCTG
TACATATCGCCAATGGTGGCGGTGCTGTCGTTATTTGGTTGTTTGGTGTT
GCTGTTGTTTTTCGCCGCATCGGCTTATCGATAGATTGTCTTGACCGCGG
TGGCAAGAGAAGCGCTGGAGGCATGTGAAATAGATGCAGAAACAGAAACT
GCTGTATGCCTCATCTGCACCGGGTATGTATGTGGTGCTTGCCTGCCGCA
CTTCAAGACATGTACCACCATCTGCTGTCTGTGGGGCCGTACCCTGTGTG
GGGGTATTCTAGCGGTGACGTCCCTTCTTACCCGGCGGCAATGCTGCCGT
AGAGCCGAGTTTCTTGTCGGTTCCTGATGTCCGCCACAGAATCGTGTCCC
ATTCATGTAGGGTTGCAACACCTCGACAATCATGCAGATTGTCACATGAG
TTCGCTGCGGCTCGAATAGCAAAGTGAGCAATGCCGTTTTGTAATGCGAA
TCGACTCAGGTACATGTTTTGCCTAACACACCGGCTTTGAGCGATTTCCC
GAGCCGAACCGACTGCAGCAGTTTGTGGGACACGCCTGCTTGTGCGCGCC
GGCCCGTGCCGTGCGTTAGAAACCCCCCCTCACTTCAAACCAACCGATGA
AGACCCTCACTAAAGACGTGCTGCTGCCGCGTACATTCGCTTCGCCCTGT
CGCCGCCGCCCATGTTTTCAGACGAGGTCGAGTATCTCATCACCTCGCGG
AGCTGGGACTACCTGAAGGGGTTCCTCGGGGTGTTTGCGACGTGCGAAGG
GGATTTCGTGGCCCTCATCGACGGGATGTACCCGACCAACAAGCCGGTGG
ACGTGAGCTCCCGGGACTCGATGCAGCTGGAGGCGCAGAACGTTTTCCTG
GCCGTCGATGACTTGTACCAGGTTTGGCAATGAGTTATGGGGGATGCTCC
AGTTGGTGGCTTGTTTCGAGGGCCGGAAAGCGGAACGTGTGTTGTTTTGT
TTTTGCTGTCGTGGCTTCTTACCGGGCGAGCAGCCGATAATACACCACTG
CTGTAGCGCCATGCTGAGCGTGCCCGTCTACTGCTGTTGGTCTTGCCACG
CTCTACACAACATACGGCGCGCGGAAAACTGTTTGATCCAGGGGGAGGTG
TTCGGTCTCGCTGTGGCACGTATGTTCCCATCGTTCTAGGACCCTCACGT
AACGGGGGGGGGGGGCTCGCGTGCGGATCAAAGCTATTGGTGTCCGGGTC
CTGTTTTTTATGTTTTTGTGTCACGCGCCAGATTGTACCACGGACTGGCA
CCTTCTCGCTTTGCCTCACTTTGCCAAGTAGGGAGTGTTAGTGTTCGGAA
CAACATCTCGCAACACGAAAATGGCACCACACCTCTTGTACGTCTGTTGA
AATCTCGGTAGTGGTTACGATATAGGAGAGTGCGTGACAGCCGAAATTTA
GTTACATGGCTTTCTTTACAACCCTTGCTATGAGGTACCCCGCTTTTCTC
TTGATAGGGACACACACGCCACTATTTACTCTCTTGTATCCGCACGAACT
CATGTGTAGAGTGTCTTACGTCGTAGCCGCCACTGTAAAGGGCACGCTAC
TAGGGTGCCCCTCCGCAATACTTGGAAGGATTGCTGATCTGTATAGTCAC
CGAGTGGGTTTGTTTCCCGAGATCCGACCGATAAGTGATGACGGAACGAG
TCTTACTCTGGTATTTGACACTCGTCGTTAAGTTGAGTTTCTCCAGGTTG
TCGCGTTGAGTGGTGCTTCCTCGACACCGGGGTTCAACGAGAAAGAGACA
GACAAGTAGGCAGGGGCAAAGAAAGAGAGGGCGAGAGAGACTGAGATAGA
AACGAAACGCGGAACATTGCGAGCAGACGGTTACAGTTTCGGAGAGAGGC
AGGCACAGCAAGACAATATGTGTGAGTCAACCAATGCAAGTTCTGCAGCT
TACTTTGGGGGTATCTAACAAGCATCAGCTTGGTGCTGGAGAGCGTGCTC
TGACGTCCCCCGACACTTGTGCTGGCATTCGCCGCGCACCAGGCATCGAT
GGCGAAGAAGGTCAAGGGCTCGGAAAAGGCGTACGTCAAGCTGGCCTTGA
GCTATGACAGGTTCTTGAAGGCCGGAAACATTGTTCCAGCGTGAGTCGCG
AAATAATTCGCCGCACCTTTGTAAGCATACAATCAGCGCCGGCACTCAAG
AACCTCTTGTTCTGAGGTCCTTAGTTTCTAGCGTTACGCTACAAATGGCC
GCTATATAGGTTGCGGTGTAGGAGTTCTTAACAAAGTTCGCTAATGGTGC
TCAAGTTACTTAGATTTGAGCTTTTCGAGGCTATACATACCAATTTCTTT
ACGGCCAAGTTCTCAAGTGCGGAGGCCTGCTGTATGCGTACAGCAGGAGC
GCGTTTTGGCGGCCCAGGCCTTGAAAAACGTCATGGGTTCCGACGTTGGC
GTGTTCATGTGTTCATGCCTCCGAACAGGAAACTCAACGGGAGAGGTCAT
TTGTTTTGCGAACCTGCCGCTTCCTTCGCAAACACGGGTAGGTACAGCCC
CTTTTCCTGAGCCTTGGAGAACCATGGCCGCGAACCTCCTATTGCTCCGT
TGACCCACGGCGGTCCCTTGTTGTGCCTCTTCGCGGTCGGTGTTTCCGCC
GCATCGCAGGTACGACCCGGTGTCTAACACGGAGAAGTTCTTCGTGGACA
TCCCCGACGAAATGCTCCGCTACGAACGAGACTCGAAGGTCCCGCTGGCG
GTCCGAGATGCGGTGAGATTTGGTGTCACGAATCGGGCAACCACGCATCG
TGTCGACGATTGATTACTTCTCTTTCGTGTTCTATTCATATCAAACGAGT
GGAATCTCTTTGTTTTCGGCCCTTCGGTGAGGACAACCACGTACCTCGTC
TCAATGACATTTTTTGATGTTCATGTCCACCAAGAAAATCGTGGAATCTC
TGTTGTTTTTGGCAGGTCCGATGTCGCGGCCGATGCGTAAGAAGCCAACA
CGCCCGAATCGCGAAGTGTACAACAGTTGGTAGGGGGACTCAATCCCTGG
ACGTGACTAACATGTACAGCAGGGTCTTGCCGCGGAGGATAGATTCGGGG
TGAAAATATGACAACACTCTCTTGACGCAAGTGTTGTTTCTTTTCTGGTG
CAAGTCGTTACACTGCTGCGTGTAACGTGATGATTTCTTTCCGTCTTCAC
CTTGTGACCGGAAACAGGTGCTTATCCTCAAGGGGCCGGATAAGGGAAGA
ACGGCGATAGTCGTTGGCGTCATCAAGAGCCGGAATCAAGCGGTGGTGAG
GACGGACGGGACTCTGACAAGAGAGATGCGGATCTTGGAGCTGTCGGATA
TCGCTCGACAGCTGCCTGACGACCCCAAGATGACGGCGGGAGGCTCGCCG
CCCGCGAAGAAATAGGCGACCACGCCCACCCTTCACGCCGCGGACGCGAA
GGTTTAAGGCCTTGCAACCACCGAGAGATTGGACCGCTTGTTTGATGGCG
AGCGACCCAAGACTCACGCCAGCGAAGGGAAAGAGAAGCGAGGCGAGCGA
GCTCGGGTGACCCGAGAAATTAAGGGGTCTAACCCCGAACTTGAAGGCTA
ATATCATTTTCGTGCTCAAGTACACACCGACACGTGAACGGGACCTAAGT
AGCCATGGCTGCCTCCGCGCTGCCGCCGCGGGGTGTCATGTCGCCGTAAA
GTTAGAACATCTGCTTCATGATACGTGACGGAAGAAGAGTGCGTCCTCCC
CGAAGAAGGCAGTGAGCGCTGCAGCCACGGGGGTGCGCTAGAGGTGGACC
ATCGCGAACAAGCAGTCTCGTCGTTGGGGATGAGGGGATGCGTTGGCCCA
CAGCATCTTAACACAAAGGCTCAAGGTTGATTGGTGGTCCCACCCACCCG
GGACCTCTCTCTCTCTCTCTCTCTCTCGTTGTTTGGTTTCGTTTGTTTCT
CGCGCGTTCGTTTGTGAAAAGCGCTGTCCGCGACGCGCCCTACTTCAGTA
TTGTTCCTCGCTCGCGCCTGCGTGTCGCAGTAGTGTTAAGTTGGAAACAC
GCGACGACCCAGCTGCTTTTGTACGATCGCCCACCCTTGGGAACACGTCG
TTTTAGGCCCCCCGTAGCACCGTGACAAACTAAATAGCGATGGGGAGATA
GACTATGTACCCCTTCCGGTCAAGTTTGATGCTGATTGCCCACGGGGGGG
GGGGGATCAGGCAGCCGACTAGTAGAAGCGCGGGGAATGGATGGCGTGCG
TTGTGTTGGGGGGTTGTATTTTTGTACCGTGCTTGGAAGGACCTTCACTC
TGCTCGAGTTGTATGTATTGTTTTCAACCTGCTTGGTGAGAACGGTTGTG
GCACTTTGTGTGCTTTGTTTGGGGGGCGCTAGAGCCAGCCCTTAACTCTG
TTGTGTGGCTGATGTTGTGGCGGTTTCGAAACTTGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:264394..271779+

>mRNA_Ecto-sp6_S_contig100.719.1 ID=mRNA_Ecto-sp6_S_contig100.719.1|Name=mRNA_Ecto-sp6_S_contig100.719.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:264394..271779+ (Ectocarpus species6 EcLAC_371)
ATGGCAAGGTGGTATGTCCTGCTCATTTTCGTGCTGGAGGGTATCTGCAG
AAGTACAGCATCAGACAGCGCATTTGTAATCTCCAAGCTTTCAAGCAGAC
GACAGCAGTGGGCATGGACAGCAGGGAGGACACAGCGGGAGCGGAGAGAC
TCCGCGTGCAGCATGGGTGCCGGCAGCGGTGAAGGAGGAGGGGGCGAGGT
CGTGAACAAGGCGATTGTGGCGGGGTTGTTGGGCTTGCAGTTGCTGTCGC
TGCCACTTGGCGTTGTCTCCAGACAACCTCGAGGCGCGGCCCTGCCGCGG
CTGAACGTTCTCTCGGCTGCTGCGGAGGTGACGACGCCGCAAGCGACGGA
GGAAGAGAAGTTCGTCGAAATCGAGCTCGAGAAGTTCGAGCGCAAGACTC
AGGTGGAGGGAAACCTGAAGAAGCAATCTACGGCTAAACGAGTCCCCTTG
CCGGACGAGCTACAGACGCCCAAGAAAGGGAAACAGTCTCCTCGAGTTAA
GCTGGTGCCGGTGTCCGACGAGAAGCTGGCCAAGTCTGTGGAGACTATCC
AAGGGCTAGCTCCTTACTTGGACGAGGTCGAGTATCTCATCACCTCGCGG
AGCTGGGACTACCTGAAGGGGTTCCTCGGGGTGTTTGCGACGTGCGAAGG
GGATTTCGTGGCCCTCATCGACGGGATGTACCCGACCAACAAGCCGGTGG
ACGTGAGCTCCCGGGACTCGATGCAGCTGGAGGCGCAGAACGTTTTCCTG
GCCGTCGATGACTTGTACCAGGCATCGATGGCGAAGAAGGTCAAGGGCTC
GGAAAAGGCGTACGTCAAGCTGGCCTTGAGCTATGACAGGTTCTTGAAGG
CCGGAAACATTGTTCCAGCGTACGACCCGGTGTCTAACACGGAGAAGTTC
TTCGTGGACATCCCCGACGAAATGCTCCGCTACGAACGAGACTCGAAGGT
CCCGCTGGCGGTCCGAGATGCGGTGCTTATCCTCAAGGGGCCGGATAAGG
GAAGAACGGCGATAGTCGTTGGCGTCATCAAGAGCCGGAATCAAGCGGTG
GTGAGGACGGACGGGACTCTGACAAGAGAGATGCGGATCTTGGAGCTGTC
GGATATCGCTCGACAGCTGCCTGACGACCCCAAGATGACGGCGGGAGGCT
CGCCGCCCGCGAAGAAATAG
back to top