mRNA_Ecto-sp6_S_contig100.706.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.706.1
Unique NamemRNA_Ecto-sp6_S_contig100.706.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:180538..182398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size273
Hectar predicted targeting categorysignal anchor
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348722.087675-CDS-Ecto-sp6_S_contig100:180537..1807131682348722.087675-CDS-Ecto-sp6_S_contig100:180537..180713Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 180538..180713 -
1682348722.0969462-CDS-Ecto-sp6_S_contig100:182301..1823981682348722.0969462-CDS-Ecto-sp6_S_contig100:182301..182398Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 182302..182398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.706.1prot_Ecto-sp6_S_contig100.706.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 180538..182398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.706.1

>prot_Ecto-sp6_S_contig100.706.1 ID=prot_Ecto-sp6_S_contig100.706.1|Name=mRNA_Ecto-sp6_S_contig100.706.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp
YSKTVARGLTERWKAELGDRERLARTPRLRGAAERWSPRRDPGRAFLTGC
SRVWLFYWYKLPRIVSALYACTFTQTMCGVCGVCVSLLLG*
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mRNA from alignment at Ecto-sp6_S_contig100:180538..182398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.706.1 ID=mRNA_Ecto-sp6_S_contig100.706.1|Name=mRNA_Ecto-sp6_S_contig100.706.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1861bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:180538..182398- (Ectocarpus species6 EcLAC_371)
TACAGTAAGACCGTGGCCAGAGGGTTGACGGAGAGGTGGAAAGCTGAGCT
AGGGGACCGAGAACGACTGGCAAGAACGCCAAGGCTGCGTGGAGCAGGTA
TGTGGCTACTGATATTTCCCATTGTCTTTGCGTGCAAGGGTGTTGGGCAC
TAACTCTGGGGCATCGCCGAAGTGGCCTTGGATGCTTGGATGGCCTTGGA
AATCACGCCGCAGCGCGAGTCTCGCCGCGCACCATGCGGTGTTCATGGAC
AGCGCTCCTTGTCTCTGCCTCTCTACGAGAAGGAGAGTTCCGCAGGATAC
GCATACGTTCACGCTTGATTGTGATAGTTGGCACTGATAATTGTGGGTGG
GTTCGCATATTCGGGAGCACACCACCTGCTTGTTCGTGTGTTGTGCGCTG
CTGCCGTGTATCATGTGTCGTGGTACGCGCGACAAGTTGGCCCAGAGAGC
ACACCACTCAAAGTTTACGCACATCAGCAACACTTACAGCTTAGGGAAAG
GCCTCCCGGTCAAGTGTTTTGTGTGCACGTAGAAAAGAAGGATCCCTCTC
GCCGGTTTCGCAGAGTTGTCTGCGTTCTACGTAGGCCTTGTTGCACATGT
ACGCCATGTCATGTGATGTTGCAGGTTGGAAACACTCCGCAAGCCGCTGC
TGTCTTGCCGGTTACCGTAGGTGACACAGATACCACACCCCTGAATCTGT
TTTCAGAGCTCGATTTCTCCACGATAAAACGACGGCAAGGCCGAAAACGG
CGGCGTTGAAGCCGCCTGGCCAAGAGATTTTTGAGAACGTGTGTTTGATT
TCTGCGTCCTCTTCGTCGTGGAGTGATTGAGCTTTGACAATCGGTCCAGG
GGGTGTGGTATCTTGTGTCACCTACGGTAGGATTAGGCCCGAAGAGTGCC
GCCGTGCGCCCGTACCCTGTAGTGTACGGTACATATTACTTTCGCCTGTT
GGGCGTGCTGTGTGTGCGTAACTGCTTCGTGCTCTGAATATGGCCGCAGG
CTCAAATATGTAACATGTGCGGGAGGATCCCGTTAACCGCTGTGGTAAAA
GTAGAAAATAGCACGCGTTGCAGCTGTAGCGCAAGACACCACACCCCCTT
GAACGAATAATTGTAGCAGCCAACCGAACATCTTGCACGTGCGATGCCGA
TGGTAGCAGTAAAGGGTGAATCGAAACCCTTCGCAAAGAAACGTCCTTGC
TTTCTACTTGTAGGTTCAAGTTGTACTCCTTCCCCTACGGCCTAGACACA
AACAACGTGCGTTGGGTAGAGGACGATGACCATGGTAGTTAAGTAAACAC
CAACAGTACTTGGATCGGAATAGTCATGAGGGGATCCATGAGTCTCTTAT
CCCAGCGCAAAGCTCGTTCCGTGATATCGCCCCTCCCGAACCCAACAGAC
AAATTGGTTCATTGCATAAACACGTTGAGGACGCAGTTTATCTTTGATGC
CCTTGTACCTTTTGTCCGTCCCGGAGCTTCATTTTCCCCTGCAAAGTTCG
TTCACCCCCCGGGGCATTCGCAAAGGCAAACTGAGGTTTTCATTGGGTCT
CTCTCTGGTGACATTCAACCGGCGAACTTCAACTTTGTTTTATCTGTTGT
TTTTTCCCCCATAAAAACAGCTAACTCGAAGACTTCGTTCTCTCCCCGAC
GCAATATGTATCTCGTTCCAATGTCCTTGTCACAGCTGAACGGTGGAGTC
CACGTCGTGACCCAGGGAGGGCTTTCTTAACGGGGTGCAGCCGCGTTTGG
CTGTTCTACTGGTACAAGTTACCACGAATTGTTTCGGCCTTGTACGCCTG
CACCTTCACACAAACCATGTGCGGCGTGTGTGGTGTGTGTGTTTCATTGT
TGTTGGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:180538..182398-

>mRNA_Ecto-sp6_S_contig100.706.1 ID=mRNA_Ecto-sp6_S_contig100.706.1|Name=mRNA_Ecto-sp6_S_contig100.706.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:180538..182398- (Ectocarpus species6 EcLAC_371)
TACAGTAAGACCGTGGCCAGAGGGTTGACGGAGAGGTGGAAAGCTGAGCT
AGGGGACCGAGAACGACTGGCAAGAACGCCAAGGCTGCGTGGAGCAGCTG
AACGGTGGAGTCCACGTCGTGACCCAGGGAGGGCTTTCTTAACGGGGTGC
AGCCGCGTTTGGCTGTTCTACTGGTACAAGTTACCACGAATTGTTTCGGC
CTTGTACGCCTGCACCTTCACACAAACCATGTGCGGCGTGTGTGGTGTGT
GTGTTTCATTGTTGTTGGGTTGA
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