mRNA_Ecto-sp6_S_contig10.624.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.624.1 vs. uniprot
Match: D7FPB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB3_ECTSI) HSP 1 Score: 1064 bits (2751), Expect = 0.000e+0 Identity = 676/721 (93.76%), Postives = 684/721 (94.87%), Query Frame = 1
Query: 1 MPAQKVTEAATKRKSPGGHPPSPRSKAKKRLVQGDSNHAAAAPDGASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELMQDEAATMKTLAAEVASIRSKQQQSQNGGEVATGKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGAATDNKPLRALALSPRAPLDLLANAMGSTSKLDGDAAPVSTTLDAAVIGLRDLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVAGRGDSRGGDSVTGDKAALEVEALGLMLRILQVAGLALSAAGGGNTASGLLRATDDAGSGGCRPADPAKWLLLPCAPETPSAWNGEVSATSSDSSLGAPPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSNKSNNIALSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDVGDVSLAAPLAPACGRALARLRRPAASPAPTAAQFLRRAYAFRVTETLNRSARAASLSSSKPPSRKEAIAPTAIAGRGSSGCARSGSXXXXXXXXXXXXXXAWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAIERLQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESVVLARLGNGAGVVADMDEEEVASVASSAVSDSDGNE 2163
MPA+KVTEAATKRKSPGGHPPSPRSKAKKRL+QGDSNHAAAAPD ASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAEL+QDEAATMKTLAAEVASIRSKQQQSQNGGEVATGKDAGVAAACALVPCTAQLYRQARA AEKQSRGIDGAATDNKPLRALALSPRAPLDLLANAMGSTSKLDG AAPVSTTLDAAVI LRDLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVAGRGD+RGGDSVTGDKAALEVEALGLMLRILQVAGLALSAA GGNTASGLLRATDDAGSGGCRPADPA WLLLPCAPETPSAWNGEVSATS DSSLG PRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQ XXXXXXXXXXXXXXXXXXXXXXX PDSNKSNNIALSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDVG+VSLAAPLAPACGRALARLRRPAA+PAPTAAQFLRRAYAFRVTETLNRSARAASLSSSKPPSRKEAIAPTAIAGRGSSGCARSGSXXXXXXXXXX AWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSA+ERLQG XXXXXXXXXXXXX A SVVLARLGNGAG+VADMDEEEVASVASSAVSDSDGNE
Sbjct: 1 MPARKVTEAATKRKSPGGHPPSPRSKAKKRLIQGDSNHAAAAPDCASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELVQDEAATMKTLAAEVASIRSKQQQSQNGGEVATGKDAGVAAACALVPCTAQLYRQARAIAEKQSRGIDGAATDNKPLRALALSPRAPLDLLANAMGSTSKLDGAAAPVSTTLDAAVISLRDLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVAGRGDTRGGDSVTGDKAALEVEALGLMLRILQVAGLALSAAAGGNTASGLLRATDDAGSGGCRPADPASWLLLPCAPETPSAWNGEVSATSLDSSLGTLPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQAXXXXXXXXXXXXXXXXXXXXXXXTGDGPDSNKSNNIALSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDVGNVSLAAPLAPACGRALARLRRPAATPAPTAAQFLRRAYAFRVTETLNRSARAASLSSSKPPSRKEAIAPTAIAGRGSSGCARSGSXXXXXXXXXX----AWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAMERLQG-VGEGGXXXXXXXXXXXXXGFFVDTGGAAGGARSVVLARLGNGAGIVADMDEEEVASVASSAVSDSDGNE 716
BLAST of mRNA_Ecto-sp6_S_contig10.624.1 vs. uniprot
Match: A0A6H5K5B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B0_9PHAE) HSP 1 Score: 979 bits (2532), Expect = 0.000e+0 Identity = 606/724 (83.70%), Postives = 620/724 (85.64%), Query Frame = 1
Query: 1 MPAQKVTEAATKRKSPGGHPPSPRSKAKKRLVQGDSNHAAAAPDGASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALGALPAGKLKAELMQDEAATMKTLAAEVASIRSKQQQS----QNGGEVATGKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGAATDNKPLRALALSPRAPLDLLANAMGSTSKLDGDAAPVSTTLDAAVIGLRDLVGALAADPLAAMSPSGLAFFADRAAVLASSAARSLVAGRGDSRGGDSVTGDKAALEVEALGLMLRILQVAGLALSAAGGGNTASGLLRATDDAGSGGCRPADPAKWLLLPCAPETPSAWNGEVSATSSDSSLGAPPRNEVDSTPPARISVARLLAHYAASVAACSVGRKAVVKAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSNKSNNIALSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDVGDVSLAAPLAPACGRALARLRRPAASPAPTAAQFLRRAYAFRVTETLNRSARAASLSSSKPPSRKEAIAPTAIAGRGSSGCARSGSXXXXXXXXXXXXXXAWDFVGDSSAPPALLEFLGRPEAPAAVGQGDAAXXXXXXXXXXXXXXXXXXELLRSSPACAPAALGPLLSAIERLQGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESVVLARLGNGAGVVADMDEEEVASVASSAVSDSDGN 2160
MPA+KV A TKRKSPG HPPSPRSKAKKRL+QGDSNHAAAA DGASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAAL ALPAGKLKAELMQ+EAA MKTLAAEV+SIRSKQ Q GGEVATGKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDG ATDNKPLRALALSPRAPLDLL NAMGSTSKLDG AAPVSTTLDAAVI LR+LVGALAADPLAAMSPSGLAFFADRAAVLASSA+RSLVA RGDSRGGDS+TGDKA LEVEALGLMLRILQVAGLALSAAGGG TASGLLRATDD G G CRPADPA WLLLPC+PET SAWNGEV+AT SDSS GAPPRNEVDSTPPA+ISVARLLAHYAASVAACSVGRKAVVKAAQ XXXXXXXXX PD+ KSNNI++SRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDD GDVSLAAPLAPACGRALARLRRPAASPAPTAAQFLRRAYAFRV E LNRSARAASLS SKPPSRKEAIAPTAIAGRGSSGCA S XXXXXX WDFVGDSSAPPALLEFLGR EAPAAVGQG A XXXXXXXXXXXXXXXXXX LLRSSPACAPAALGPLLSA+ERLQGG AESVVLARLGNG VV DMDEEEVASVASS VS SDGN
Sbjct: 1 MPARKVAVATTKRKSPGDHPPSPRSKAKKRLIQGDSNHAAAAVDGASSKPAVSRAHKFIVGLAVQLTSTCDDEEVDVDVQVEGLFRAALSALPAGKLKAELMQNEAAAMKTLAAEVSSIRSKQXXXXXXPQKGGEVATGKDAGVAAACALVPCTAQLYRQARATAEKQSRGIDGTATDNKPLRALALSPRAPLDLLVNAMGSTSKLDGAAAPVSTTLDAAVICLRNLVGALAADPLAAMSPSGLAFFADRAAVLASSASRSLVARRGDSRGGDSITGDKAGLEVEALGLMLRILQVAGLALSAAGGGTTASGLLRATDDGGCGSCRPADPASWLLLPCSPETSSAWNGEVAATPSDSSPGAPPRNEVDSTPPAQISVARLLAHYAASVAACSVGRKAVVKAAQVAATGEGREGSDDESXXXXXXXXXTGDGPDNKKSNNISVSRHLSALCAANLAGSEPGTLEFLRCVGDAVFATDDGGDVSLAAPLAPACGRALARLRRPAASPAPTAAQFLRRAYAFRVAEALNRSARAASLSLSKPPSRKEAIAPTAIAGRGSSGCASS--------XXXXXXAAEWDFVGDSSAPPALLEFLGRSEAPAAVGQGSAXXXXXXXXXXXXXXXXXXXXLLRSSPACAPAALGPLLSAMERLQGGEEGGGKTAAAATAVGVGGFFVDTGEMAEG-AESVVLARLGNGTDVVPDMDEEEVASVASSTVSGSDGN 715 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.624.1 >prot_Ecto-sp6_S_contig10.624.1 ID=prot_Ecto-sp6_S_contig10.624.1|Name=mRNA_Ecto-sp6_S_contig10.624.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=722bp MPAQKVTEAATKRKSPGGHPPSPRSKAKKRLVQGDSNHAAAAPDGASSKPback to top mRNA from alignment at Ecto-sp6_S_contig10:2097712..2101663+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.624.1 ID=mRNA_Ecto-sp6_S_contig10.624.1|Name=mRNA_Ecto-sp6_S_contig10.624.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3952bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2097712..2101663+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2097712..2101663+ >mRNA_Ecto-sp6_S_contig10.624.1 ID=mRNA_Ecto-sp6_S_contig10.624.1|Name=mRNA_Ecto-sp6_S_contig10.624.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2166bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2097712..2101663+ (Ectocarpus species6 EcLAC_371)back to top |