mRNA_Ecto-sp6_S_contig10.571.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.571.1
Unique NamemRNA_Ecto-sp6_S_contig10.571.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.571.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.880e-49
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 CDGATAQWLESEVRAITKAKAALITAVEDGGDSVRVTCRSDRLQLAASGQRGSGSVGQAAEMDRRALMQDVTTLRDILAKTQPEEARRLTNGLAF 285
            CDG TAQWLESEVRAITKAKAALITAVEDGGDSVRVTCRSDRLQ+AAS QRGSGSVGQAAEMDRRALMQDV TLRDILAKTQPEEARRLT+GL F
Sbjct:  346 CDGVTAQWLESEVRAITKAKAALITAVEDGGDSVRVTCRSDRLQVAASAQRGSGSVGQAAEMDRRALMQDVATLRDILAKTQPEEARRLTDGLDF 440
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BLAST of mRNA_Ecto-sp6_S_contig10.571.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.820e-48
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 CDGATAQWLESEVRAITKAKAALITAVEDGGDSVRVTCRSDRLQLAASGQRGSGSVGQAAEMDRRALMQDVTTLRDILAKTQPEEARRLTNGLAF 285
            CDG TAQWLESEVRAITKAKAALI A+EDGGDSVRVTCRSDRLQ+AAS QRGSGSVGQAAEMDRRAL+QDV TLRDILAKTQPEEARRLT+GL F
Sbjct:  345 CDGVTAQWLESEVRAITKAKAALIAAIEDGGDSVRVTCRSDRLQVAASAQRGSGSVGQAAEMDRRALIQDVATLRDILAKTQPEEARRLTDGLVF 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN94_ECTSI1.880e-4993.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE2.820e-4890.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1575996..1576730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348709.4615078-CDS-Ecto-sp6_S_contig10:1575995..15761141682348709.4615078-CDS-Ecto-sp6_S_contig10:1575995..1576114Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1575996..1576114 +
1682348709.4775152-CDS-Ecto-sp6_S_contig10:1576558..15767301682348709.4775152-CDS-Ecto-sp6_S_contig10:1576558..1576730Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1576559..1576730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.571.1prot_Ecto-sp6_S_contig10.571.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1575996..1576730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.571.1

>prot_Ecto-sp6_S_contig10.571.1 ID=prot_Ecto-sp6_S_contig10.571.1|Name=mRNA_Ecto-sp6_S_contig10.571.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=97bp
CDGATAQWLESEVRAITKAKAALITAVEDGGDSVRVTCRSDRLQLAASGQ
RGSGSVGQAAEMDRRALMQDVTTLRDILAKTQPEEARRLTNGLAFT*
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mRNA from alignment at Ecto-sp6_S_contig10:1575996..1576730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.571.1 ID=mRNA_Ecto-sp6_S_contig10.571.1|Name=mRNA_Ecto-sp6_S_contig10.571.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1575996..1576730+ (Ectocarpus species6 EcLAC_371)
TGTGATGGGGCGACAGCTCAGTGGCTCGAGAGTGAGGTCCGAGCCATCAC
GAAGGCAAAGGCGGCGTTAATCACGGCTGTCGAAGACGGGGGGGACAGCG
TGAGAGTCACATGCCGCAGGTGTGTCTGTTGGGGGGTCGACGGGAAGTGA
AGAGCATGTTTCTGACGGGGTGTTCGTGTTCGTGGCCATCACGAGGTACG
CGGAACGTCGGCGTAAGGAGACTTTGGCTCTGCATGCTTACGCTTGGTCG
ACATTAGCTCAGAGAGAAAATGGTGATGGTCAAGCGCTGTGTCGCCAGTT
GGGCTACGCGTTTGAACGTGAACTTTGGTTGTCTGAACGGGTTCTCTCTC
ACGGAGATAACCCCCGCCGTCTGCACCTTTCATGCAACATGGTCAGCGAC
CATGAGTCCCTCCATCCTCCTCGTATACCTCCTTCAGCATGCCTGCGCTT
ACAGTAGAGCGTATCGCCTGGTCCTGAGTACGAATCCTCTTTTCGCCCGC
ATCTCGGGTACTGTCGTGACGTACCGCCAAATATTTTCGCACCTTTGCCG
CGTGCCCGGGCAGCGATCGGCTCCAATTGGCTGCCTCCGGGCAGCGAGGG
AGCGGCTCCGTGGGACAGGCGGCCGAGATGGACCGCAGAGCTCTGATGCA
AGACGTGACGACCCTGCGGGACATCCTGGCGAAGACCCAGCCGGAAGAAG
CCAGGAGGCTGACCAACGGACTGGCTTTTACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1575996..1576730+

>mRNA_Ecto-sp6_S_contig10.571.1 ID=mRNA_Ecto-sp6_S_contig10.571.1|Name=mRNA_Ecto-sp6_S_contig10.571.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1575996..1576730+ (Ectocarpus species6 EcLAC_371)
TGTGATGGGGCGACAGCTCAGTGGCTCGAGAGTGAGGTCCGAGCCATCAC
GAAGGCAAAGGCGGCGTTAATCACGGCTGTCGAAGACGGGGGGGACAGCG
TGAGAGTCACATGCCGCAGCGATCGGCTCCAATTGGCTGCCTCCGGGCAG
CGAGGGAGCGGCTCCGTGGGACAGGCGGCCGAGATGGACCGCAGAGCTCT
GATGCAAGACGTGACGACCCTGCGGGACATCCTGGCGAAGACCCAGCCGG
AAGAAGCCAGGAGGCTGACCAACGGACTGGCTTTTACCTGA
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